RNA–Protein interactions for RNA: ENST00000478934.5

VPS52-217, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 2,602 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-217ENST00000478934 RHPN1Q8TCX5 695 aa13.2□□□□□ -0.3
VPS52-217ENST00000478934 DNAAF4Q8WXU2 420 aa13.2□□□□□ -0.3
VPS52-217ENST00000478934 RBM27Q9P2N5 1060 aaKnown RBP13.2□□□□□ -0.3
VPS52-217ENST00000478934 PRPF40AO75400 957 aaKnown RBP13.2□□□□□ -0.3
VPS52-217ENST00000478934 CWF19L2Q2TBE0 894 aaKnown RBP13.2□□□□□ -0.3
VPS52-217ENST00000478934 STAP2Q9UGK3 403 aa13.2□□□□□ -0.3
VPS52-217ENST00000478934 PA2G4Q9UQ80 394 aaKnown RBP13.2□□□□□ -0.3
VPS52-217ENST00000478934 PXDNQ92626 1479 aa13.2□□□□□ -0.3
VPS52-217ENST00000478934 RGPD2P0DJD1 1756 aa13.2□□□□□ -0.3
VPS52-217ENST00000478934 ZC3H6P61129 1189 aaKnown RBP13.19□□□□□ -0.3
VPS52-217ENST00000478934 TPRNQ4KMQ1 711 aa13.19□□□□□ -0.3
VPS52-217ENST00000478934 LMBRD1Q9NUN5 540 aa13.19□□□□□ -0.3
VPS52-217ENST00000478934 LTN1O94822 1766 aa13.19□□□□□ -0.3
VPS52-217ENST00000478934 ADCY9O60503 1353 aa13.19□□□□□ -0.3
VPS52-217ENST00000478934 GOLGA6L22H0YM25 854 aa13.19□□□□□ -0.3
VPS52-217ENST00000478934 POLA2Q14181 598 aa13.19□□□□□ -0.3
VPS52-217ENST00000478934 ANKRD24Q8TF21 1146 aa13.19□□□□□ -0.3
VPS52-217ENST00000478934 NSFL1CQ9UNZ2 370 aaKnown RBP13.19□□□□□ -0.3
VPS52-217ENST00000478934 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.19□□□□□ -0.3
VPS52-217ENST00000478934 NFAT5O94916 1531 aa13.19□□□□□ -0.3
VPS52-217ENST00000478934 RNMTO43148 476 aaKnown RBP13.18□□□□□ -0.3
VPS52-217ENST00000478934 AIMP1Q12904 312 aaKnown RBP13.18□□□□□ -0.3
VPS52-217ENST00000478934 PI4K2BQ8TCG2 481 aa13.18□□□□□ -0.3
VPS52-217ENST00000478934 MAP3K2Q9Y2U5 619 aa13.18□□□□□ -0.3
VPS52-217ENST00000478934 SLC39A6Q13433 755 aa13.18□□□□□ -0.3
VPS52-217ENST00000478934 SKOR2Q2VWA4 1001 aaPredicted RBP13.18□□□□□ -0.3
VPS52-217ENST00000478934 AKAP4Q5JQC9 854 aa13.18□□□□□ -0.3
VPS52-217ENST00000478934 CLEC17AQ6ZS10 378 aa13.18□□□□□ -0.3
VPS52-217ENST00000478934 ARHGEF25Q86VW2 580 aa13.18□□□□□ -0.3
VPS52-217ENST00000478934 NUCB2P80303 420 aa13.17□□□□□ -0.3
VPS52-217ENST00000478934 PLEKHO1Q53GL0 409 aaPredicted RBP13.17□□□□□ -0.3
VPS52-217ENST00000478934 TRIM44Q96DX7 344 aaPredicted RBP13.17□□□□□ -0.3
VPS52-217ENST00000478934 BABAM1Q9NWV8 329 aa13.17□□□□□ -0.3
VPS52-217ENST00000478934 SPG7Q9UQ90 795 aa13.17□□□□□ -0.3
VPS52-217ENST00000478934 ESPNB1AK53 854 aa13.16□□□□□ -0.3
VPS52-217ENST00000478934 CPA1P15085 419 aa13.16□□□□□ -0.3
VPS52-217ENST00000478934 PIP4K2AP48426 406 aaPredicted RBP13.16□□□□□ -0.3
VPS52-217ENST00000478934 KCNH5Q8NCM2 988 aa13.16□□□□□ -0.3
VPS52-217ENST00000478934 GPT2Q8TD30 523 aa13.16□□□□□ -0.3
VPS52-217ENST00000478934 GIGYF1O75420 1035 aaPredicted RBP13.16□□□□□ -0.3
VPS52-217ENST00000478934 NASPP49321 788 aaPredicted RBP13.16□□□□□ -0.3
VPS52-217ENST00000478934 KLHL40Q2TBA0 621 aa13.16□□□□□ -0.3
VPS52-217ENST00000478934 C1orf141Q5JVX7 400 aa13.16□□□□□ -0.3
VPS52-217ENST00000478934 CWC27Q6UX04 472 aaKnown RBP13.16□□□□□ -0.3
VPS52-217ENST00000478934 OS9Q13438 667 aaPredicted RBP13.15□□□□□ -0.3
VPS52-217ENST00000478934 DDX54Q8TDD1 881 aaKnown RBP13.15□□□□□ -0.3
VPS52-217ENST00000478934 JARID2Q92833 1246 aaPredicted RBP13.15□□□□□ -0.3
VPS52-217ENST00000478934 CLCN1P35523 988 aa13.15□□□□□ -0.3
VPS52-217ENST00000478934 RASEFQ8IZ41 740 aa13.15□□□□□ -0.3
VPS52-217ENST00000478934 ZSCAN23Q3MJ62 389 aa13.14□□□□□ -0.31
VPS52-217ENST00000478934 CWC22Q9HCG8 908 aaKnown RBP13.14□□□□□ -0.31
VPS52-217ENST00000478934 C9orf78Q9NZ63 289 aaPredicted RBP13.14□□□□□ -0.31
VPS52-217ENST00000478934 KRT28Q7Z3Y7 464 aa13.14□□□□□ -0.31
VPS52-217ENST00000478934 CABLES1Q8TDN4 633 aa13.14□□□□□ -0.31
VPS52-217ENST00000478934 KIF1BPQ96EK5 621 aa13.14□□□□□ -0.31
VPS52-217ENST00000478934 GDPD2Q9HCC8 539 aa13.14□□□□□ -0.31
VPS52-217ENST00000478934 ADGRL3Q9HAR2 1447 aa13.14□□□□□ -0.31
VPS52-217ENST00000478934 CHD2O14647 1828 aaKnown RBP13.14□□□□□ -0.31
VPS52-217ENST00000478934 KLHDC4Q8TBB5 520 aa13.13□□□□□ -0.31
VPS52-217ENST00000478934 DBF4Q9UBU7 674 aaPredicted RBP13.13□□□□□ -0.31
VPS52-217ENST00000478934 RAB11FIP3O75154 756 aa13.13□□□□□ -0.31
VPS52-217ENST00000478934 MYL6BP14649 208 aa13.13□□□□□ -0.31
VPS52-217ENST00000478934 MCCP23508 829 aa13.12□□□□□ -0.31
VPS52-217ENST00000478934 PRIM1P49642 420 aaKnown RBP13.12□□□□□ -0.31
VPS52-217ENST00000478934 KAZALD1Q96I82 304 aa13.12□□□□□ -0.31
VPS52-217ENST00000478934 RBSNQ9H1K0 784 aa13.12□□□□□ -0.31
VPS52-217ENST00000478934 PXDNLA1KZ92 1463 aa13.12□□□□□ -0.31
VPS52-217ENST00000478934 SGSM2O43147 1006 aa13.12□□□□□ -0.31
VPS52-217ENST00000478934 COL9A3Q14050 684 aaPredicted RBP13.12□□□□□ -0.31
VPS52-217ENST00000478934 PROSER2Q86WR7 435 aaPredicted RBP13.12□□□□□ -0.31
VPS52-217ENST00000478934 SUCLG2Q96I99 432 aa13.12□□□□□ -0.31
VPS52-217ENST00000478934 SIL1Q9H173 461 aa13.12□□□□□ -0.31
VPS52-217ENST00000478934 TUBGCP6Q96RT7 1819 aa13.12□□□□□ -0.31
VPS52-217ENST00000478934 PRKCSHP14314 528 aaPredicted RBP13.11□□□□□ -0.31
VPS52-217ENST00000478934 HSPA4P34932 840 aa13.11□□□□□ -0.31
VPS52-217ENST00000478934 MED1Q15648 1581 aaPredicted RBP13.11□□□□□ -0.31
VPS52-217ENST00000478934 PTH1RQ03431 593 aa13.11□□□□□ -0.31
VPS52-217ENST00000478934 CUL4AQ13619 759 aa13.11□□□□□ -0.31
VPS52-217ENST00000478934 AMOTQ4VCS5 1084 aa13.11□□□□□ -0.31
VPS52-217ENST00000478934 KSR2Q6VAB6 950 aa13.11□□□□□ -0.31
VPS52-217ENST00000478934 LSG1Q9H089 658 aaKnown RBP13.11□□□□□ -0.31
VPS52-217ENST00000478934 NLRP2Q9NX02 1062 aa13.11□□□□□ -0.31
VPS52-217ENST00000478934 TMEM63CQ9P1W3 806 aa13.11□□□□□ -0.31
VPS52-217ENST00000478934 SNX14Q9Y5W7 946 aa13.11□□□□□ -0.31
VPS52-217ENST00000478934 TCHHQ07283 1943 aa13.11□□□□□ -0.31
VPS52-217ENST00000478934 SYCE3A1L190 88 aa13.1□□□□□ -0.31
VPS52-217ENST00000478934 HOXB7P09629 217 aa13.1□□□□□ -0.31
VPS52-217ENST00000478934 PDIA6Q15084 440 aa13.1□□□□□ -0.31
VPS52-217ENST00000478934 NFATC2IPQ8NCF5 419 aa13.1□□□□□ -0.31
VPS52-217ENST00000478934 CCDC8Q9H0W5 538 aaPredicted RBP13.1□□□□□ -0.31
VPS52-217ENST00000478934 BICC1Q9H694 974 aaKnown RBP13.1□□□□□ -0.31
VPS52-217ENST00000478934 TLR7Q9NYK1 1049 aaKnown RBP13.1□□□□□ -0.31
VPS52-217ENST00000478934 CHRNA2Q15822 529 aa13.1□□□□□ -0.31
VPS52-217ENST00000478934 USP54Q70EL1 1684 aa13.1□□□□□ -0.31
VPS52-217ENST00000478934 BRD1O95696 1058 aa13.09□□□□□ -0.31
VPS52-217ENST00000478934 PTMSP20962 102 aa13.09□□□□□ -0.31
VPS52-217ENST00000478934 RNF214Q8ND24 703 aa13.09□□□□□ -0.31
VPS52-217ENST00000478934 ISY1Q9ULR0 285 aaKnown RBP13.09□□□□□ -0.31
VPS52-217ENST00000478934 IGKV5-2P06315 115 aa13.09□□□□□ -0.31
VPS52-217ENST00000478934 ANAPC15P60006 121 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms