RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 TEAD4Q15561 434 aa8.35□□□□□ -1.07
UPF3B-203ENST00000478840 NBPF15Q8N660 670 aa8.35□□□□□ -1.07
UPF3B-203ENST00000478840 KDF1Q8NAX2 398 aaPredicted RBP8.35□□□□□ -1.07
UPF3B-203ENST00000478840 CNKSR1Q969H4 720 aa8.35□□□□□ -1.07
UPF3B-203ENST00000478840 BRPF3Q9ULD4 1205 aa8.35□□□□□ -1.07
UPF3B-203ENST00000478840 P4HBP07237 508 aaKnown RBP8.34□□□□□ -1.07
UPF3B-203ENST00000478840 TBCELQ5QJ74 424 aa8.34□□□□□ -1.07
UPF3B-203ENST00000478840 Q6ZVU0 165 aa8.34□□□□□ -1.07
UPF3B-203ENST00000478840 ABTB2Q8N961 1025 aa8.34□□□□□ -1.07
UPF3B-203ENST00000478840 DMRTB1Q96MA1 342 aa8.34□□□□□ -1.07
UPF3B-203ENST00000478840 FAM129BQ96TA1 746 aa8.34□□□□□ -1.07
UPF3B-203ENST00000478840 FHDC1Q9C0D6 1143 aaPredicted RBP8.34□□□□□ -1.07
UPF3B-203ENST00000478840 BCL11AQ9H165 835 aa8.34□□□□□ -1.07
UPF3B-203ENST00000478840 RAB6BQ9NRW1 208 aa8.34□□□□□ -1.07
UPF3B-203ENST00000478840 LRFN2Q9ULH4 789 aa8.34□□□□□ -1.07
UPF3B-203ENST00000478840 CHMP3Q9Y3E7 222 aa8.34□□□□□ -1.07
UPF3B-203ENST00000478840 USP3Q9Y6I4 520 aa8.34□□□□□ -1.07
UPF3B-203ENST00000478840 EML1O00423 815 aa8.33□□□□□ -1.08
UPF3B-203ENST00000478840 SLC19A1P41440 591 aa8.33□□□□□ -1.08
UPF3B-203ENST00000478840 TLR1Q15399 786 aa8.33□□□□□ -1.08
UPF3B-203ENST00000478840 RECKO95980 971 aa8.32□□□□□ -1.08
UPF3B-203ENST00000478840 FGD1P98174 961 aa8.32□□□□□ -1.08
UPF3B-203ENST00000478840 MRPL58Q14197 206 aaKnown RBP8.32□□□□□ -1.08
UPF3B-203ENST00000478840 ALKBH8Q96BT7 664 aaKnown RBP8.32□□□□□ -1.08
UPF3B-203ENST00000478840 KLF16Q9BXK1 252 aaPredicted RBP8.32□□□□□ -1.08
UPF3B-203ENST00000478840 CCDC87Q9NVE4 849 aa8.32□□□□□ -1.08
UPF3B-203ENST00000478840 SERTM1A2A2V5 107 aa8.31□□□□□ -1.08
UPF3B-203ENST00000478840 BRD2P25440 801 aaKnown RBP8.31□□□□□ -1.08
UPF3B-203ENST00000478840 NOS2P35228 1153 aa8.31□□□□□ -1.08
UPF3B-203ENST00000478840 PTGIRP43119 386 aa8.31□□□□□ -1.08
UPF3B-203ENST00000478840 PDE3BQ13370 1112 aa8.31□□□□□ -1.08
UPF3B-203ENST00000478840 NNTQ13423 1086 aa8.31□□□□□ -1.08
UPF3B-203ENST00000478840 SPRYD7Q5W111 196 aa8.31□□□□□ -1.08
UPF3B-203ENST00000478840 ZDHHC1Q8WTX9 485 aa8.31□□□□□ -1.08
UPF3B-203ENST00000478840 CENPCQ03188 943 aa8.3□□□□□ -1.08
UPF3B-203ENST00000478840 RTN1Q16799 776 aa8.3□□□□□ -1.08
UPF3B-203ENST00000478840 PPARGC1BQ86YN6 1023 aaKnown RBP8.3□□□□□ -1.08
UPF3B-203ENST00000478840 ZBTB39O15060 712 aa8.29□□□□□ -1.08
UPF3B-203ENST00000478840 ALDH1A1P00352 501 aa8.29□□□□□ -1.08
UPF3B-203ENST00000478840 PLCB3Q01970 1234 aa8.29□□□□□ -1.08
UPF3B-203ENST00000478840 C11orf91Q3C1V1 193 aa8.29□□□□□ -1.08
UPF3B-203ENST00000478840 FAM26DQ5JW98 314 aa8.29□□□□□ -1.08
UPF3B-203ENST00000478840 C8orf37Q96NL8 207 aa8.29□□□□□ -1.08
UPF3B-203ENST00000478840 IRX2Q9BZI1 471 aaPredicted RBP8.29□□□□□ -1.08
UPF3B-203ENST00000478840 LOC105371045A0A1W2PR82 267 aa8.28□□□□□ -1.08
UPF3B-203ENST00000478840 GPR182O15218 404 aa8.28□□□□□ -1.08
UPF3B-203ENST00000478840 PRPF40AO75400 957 aaKnown RBP8.28□□□□□ -1.08
UPF3B-203ENST00000478840 EHHADHQ08426 723 aa8.28□□□□□ -1.08
UPF3B-203ENST00000478840 CBLBQ13191 982 aa8.28□□□□□ -1.08
UPF3B-203ENST00000478840 C1orf53Q5VUE5 145 aa8.28□□□□□ -1.08
UPF3B-203ENST00000478840 ALDH16A1Q8IZ83 802 aa8.28□□□□□ -1.08
UPF3B-203ENST00000478840 GJD3Q8N144 294 aa8.28□□□□□ -1.08
UPF3B-203ENST00000478840 L3MBTL2Q969R5 705 aa8.28□□□□□ -1.08
UPF3B-203ENST00000478840 V9GY48 417 aaPredicted RBP8.28□□□□□ -1.08
UPF3B-203ENST00000478840 MZF1P28698 734 aaPredicted RBP8.27□□□□□ -1.09
UPF3B-203ENST00000478840 USP5P45974 858 aa8.27□□□□□ -1.09
UPF3B-203ENST00000478840 SH3PXD2AQ5TCZ1 1133 aa8.27□□□□□ -1.09
UPF3B-203ENST00000478840 ZNF598Q86UK7 904 aaKnown RBP8.27□□□□□ -1.09
UPF3B-203ENST00000478840 SNIP1Q8TAD8 396 aaKnown RBP8.27□□□□□ -1.09
UPF3B-203ENST00000478840 ITPKCQ96DU7 683 aa8.27□□□□□ -1.09
UPF3B-203ENST00000478840 PKD2L1Q9P0L9 805 aa8.27□□□□□ -1.09
UPF3B-203ENST00000478840 WASF2Q9Y6W5 498 aa8.27□□□□□ -1.09
UPF3B-203ENST00000478840 LDHBP07195 334 aaKnown RBP8.26□□□□□ -1.09
UPF3B-203ENST00000478840 AAMPQ13685 434 aa8.26□□□□□ -1.09
UPF3B-203ENST00000478840 ETFBKMTQ8IXQ9 262 aa8.26□□□□□ -1.09
UPF3B-203ENST00000478840 TMC1Q8TDI8 760 aa8.26□□□□□ -1.09
UPF3B-203ENST00000478840 NIFKQ9BYG3 293 aaKnown RBP8.26□□□□□ -1.09
UPF3B-203ENST00000478840 CABP1Q9NZU7 370 aa8.26□□□□□ -1.09
UPF3B-203ENST00000478840 GFRA3O60609 400 aa8.25□□□□□ -1.09
UPF3B-203ENST00000478840 GPC1P35052 558 aa8.25□□□□□ -1.09
UPF3B-203ENST00000478840 ITGAEP38570 1179 aa8.25□□□□□ -1.09
UPF3B-203ENST00000478840 LDLRAD1Q5T700 205 aa8.25□□□□□ -1.09
UPF3B-203ENST00000478840 ZNF697Q5TEC3 545 aa8.25□□□□□ -1.09
UPF3B-203ENST00000478840 RHBDD1Q8TEB9 315 aa8.25□□□□□ -1.09
UPF3B-203ENST00000478840 NGLY1Q96IV0 654 aa8.25□□□□□ -1.09
UPF3B-203ENST00000478840 NLRP3Q96P20 1036 aa8.25□□□□□ -1.09
UPF3B-203ENST00000478840 ZSCAN10Q96SZ4 725 aaPredicted RBP8.25□□□□□ -1.09
UPF3B-203ENST00000478840 BACH2Q9BYV9 841 aa8.25□□□□□ -1.09
UPF3B-203ENST00000478840 ZNF232Q9UNY5 417 aa8.25□□□□□ -1.09
UPF3B-203ENST00000478840 ZIC2O95409 532 aaPredicted RBP8.24□□□□□ -1.09
UPF3B-203ENST00000478840 DGKZQ13574 1117 aa8.24□□□□□ -1.09
UPF3B-203ENST00000478840 ENOX2Q16206 610 aaKnown RBP8.24□□□□□ -1.09
UPF3B-203ENST00000478840 TSNAXIP1Q2TAA8 658 aa8.24□□□□□ -1.09
UPF3B-203ENST00000478840 TRIM67Q6ZTA4 783 aa8.24□□□□□ -1.09
UPF3B-203ENST00000478840 TMC4Q7Z404 712 aa8.24□□□□□ -1.09
UPF3B-203ENST00000478840 ATCAYQ86WG3 371 aa8.24□□□□□ -1.09
UPF3B-203ENST00000478840 IFT43Q96FT9 208 aa8.24□□□□□ -1.09
UPF3B-203ENST00000478840 PHACTR1Q9C0D0 580 aa8.24□□□□□ -1.09
UPF3B-203ENST00000478840 POLIQ9UNA4 740 aa8.24□□□□□ -1.09
UPF3B-203ENST00000478840 HCN4Q9Y3Q4 1203 aa8.24□□□□□ -1.09
UPF3B-203ENST00000478840 SHROOM4Q9ULL8 1493 aa8.24□□□□□ -1.09
UPF3B-203ENST00000478840 MEN1O00255 615 aa8.23□□□□□ -1.09
UPF3B-203ENST00000478840 SCAMP3O14828 347 aaKnown RBP8.23□□□□□ -1.09
UPF3B-203ENST00000478840 PDGFAP04085 211 aa8.23□□□□□ -1.09
UPF3B-203ENST00000478840 TIMP2P16035 220 aa8.23□□□□□ -1.09
UPF3B-203ENST00000478840 ZAP70P43403 619 aa8.23□□□□□ -1.09
UPF3B-203ENST00000478840 DAB2P98082 770 aa8.23□□□□□ -1.09
UPF3B-203ENST00000478840 AGBL1Q96MI9 1066 aa8.23□□□□□ -1.09
UPF3B-203ENST00000478840 GRIP2Q9C0E4 1043 aa8.23□□□□□ -1.09
UPF3B-203ENST00000478840 ZFAND3Q9H8U3 227 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms