RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 MORC1Q86VD1 984 aa23.51■■□□□ 1.35
VIM-204ENST00000478746 NARFQ9UHQ1 456 aa23.51■■□□□ 1.35
VIM-204ENST00000478746 SOS1Q07889 1333 aaPredicted RBP23.51■■□□□ 1.35
VIM-204ENST00000478746 CYP19A1P11511 503 aaPredicted RBP23.5■■□□□ 1.35
VIM-204ENST00000478746 TTLL6Q8N841 843 aa23.5■■□□□ 1.35
VIM-204ENST00000478746 SERPINB2P05120 415 aa23.49■■□□□ 1.35
VIM-204ENST00000478746 AKAP4Q5JQC9 854 aa23.49■■□□□ 1.35
VIM-204ENST00000478746 SLC52A2Q9HAB3 445 aa23.49■■□□□ 1.35
VIM-204ENST00000478746 ADAMTS7Q9UKP4 1686 aa23.48■■□□□ 1.35
VIM-204ENST00000478746 LGR6Q9HBX8 967 aa23.48■■□□□ 1.35
VIM-204ENST00000478746 TIMELESSQ9UNS1 1208 aa23.48■■□□□ 1.35
VIM-204ENST00000478746 H0YIN7 160 aa23.47■■□□□ 1.35
VIM-204ENST00000478746 HSPA1AP0DMV8 641 aaKnown RBP23.47■■□□□ 1.35
VIM-204ENST00000478746 HSPA1BP0DMV9 641 aaKnown RBP23.47■■□□□ 1.35
VIM-204ENST00000478746 C2CD5Q86YS7 1000 aa23.47■■□□□ 1.35
VIM-204ENST00000478746 IL13P35225 146 aa23.46■■□□□ 1.35
VIM-204ENST00000478746 AFDNP55196 1824 aaKnown RBP23.46■■□□□ 1.35
VIM-204ENST00000478746 SLC39A6Q13433 755 aa23.46■■□□□ 1.35
VIM-204ENST00000478746 SCN11AQ9UI33 1791 aa23.46■■□□□ 1.35
VIM-204ENST00000478746 DPY19L2Q6NUT2 758 aa23.45■■□□□ 1.34
VIM-204ENST00000478746 BCL2L12Q9HB09 334 aa23.45■■□□□ 1.34
VIM-204ENST00000478746 COL15A1P39059 1388 aa23.44■■□□□ 1.34
VIM-204ENST00000478746 ZBTB1Q9Y2K1 713 aa23.44■■□□□ 1.34
VIM-204ENST00000478746 CCDC88AQ3V6T2 1871 aa23.44■■□□□ 1.34
VIM-204ENST00000478746 RNMTO43148 476 aaKnown RBP23.43■■□□□ 1.34
VIM-204ENST00000478746 POTECB2RU33 542 aa23.42■■□□□ 1.34
VIM-204ENST00000478746 NFKBIEO00221 500 aa23.42■■□□□ 1.34
VIM-204ENST00000478746 BICDL1Q6ZP65 573 aa23.41■■□□□ 1.34
VIM-204ENST00000478746 NRXN2Q9P2S2 1712 aa23.41■■□□□ 1.34
VIM-204ENST00000478746 CANXP27824 592 aaKnown RBP23.4■■□□□ 1.34
VIM-204ENST00000478746 VSIG10Q8N0Z9 540 aa23.4■■□□□ 1.34
VIM-204ENST00000478746 ZNF622Q969S3 477 aaKnown RBP eCLIP23.4■■□□□ 1.34
VIM-204ENST00000478746 DLEC1Q9Y238 1755 aa23.39■■□□□ 1.33
VIM-204ENST00000478746 EIF4G2P78344 907 aaKnown RBP eCLIP23.38■■□□□ 1.33
VIM-204ENST00000478746 KNSTRNQ9Y448 316 aa23.38■■□□□ 1.33
VIM-204ENST00000478746 STARD3NLO95772 234 aa23.37■■□□□ 1.33
VIM-204ENST00000478746 ERFEQ4G0M1 354 aa23.37■■□□□ 1.33
VIM-204ENST00000478746 ZNF219Q9P2Y4 722 aaPredicted RBP23.37■■□□□ 1.33
VIM-204ENST00000478746 PDZRN3Q9UPQ7 1066 aa23.37■■□□□ 1.33
VIM-204ENST00000478746 CARMIL3Q8ND23 1372 aa23.37■■□□□ 1.33
VIM-204ENST00000478746 TIAM2Q8IVF5 1701 aa23.36■■□□□ 1.33
VIM-204ENST00000478746 A0A087WZG4 1122 aa23.36■■□□□ 1.33
VIM-204ENST00000478746 C21orf2O43822 256 aa23.36■■□□□ 1.33
VIM-204ENST00000478746 HMOX1P09601 288 aa23.36■■□□□ 1.33
VIM-204ENST00000478746 HSPA5P11021 654 aaKnown RBP23.36■■□□□ 1.33
VIM-204ENST00000478746 PDE6BP35913 854 aa23.36■■□□□ 1.33
VIM-204ENST00000478746 EIF5P55010 431 aaKnown RBP23.35■■□□□ 1.33
VIM-204ENST00000478746 BRIP1Q9BX63 1249 aa23.35■■□□□ 1.33
VIM-204ENST00000478746 MTHFSDQ2M296 383 aaKnown RBP23.34■■□□□ 1.33
VIM-204ENST00000478746 TBC1D9BQ66K14 1250 aa23.34■■□□□ 1.33
VIM-204ENST00000478746 CHADLQ6NUI6 762 aa23.34■■□□□ 1.33
VIM-204ENST00000478746 MRC1P22897 1456 aa23.34■■□□□ 1.33
VIM-204ENST00000478746 TTC5Q8N0Z6 440 aa23.33■■□□□ 1.33
VIM-204ENST00000478746 CREBZFQ9NS37 354 aa23.33■■□□□ 1.33
VIM-204ENST00000478746 TRIM26Q12899 539 aaPredicted RBP23.32■■□□□ 1.32
VIM-204ENST00000478746 MKRN1Q9UHC7 482 aaKnown RBP23.32■■□□□ 1.32
VIM-204ENST00000478746 CCDC24Q8N4L8 307 aa23.31■■□□□ 1.32
VIM-204ENST00000478746 VIRMAQ69YN4 1812 aaKnown RBP23.31■■□□□ 1.32
VIM-204ENST00000478746 DICER1Q9UPY3 1922 aaKnown RBP23.3■■□□□ 1.32
VIM-204ENST00000478746 DDNO94850 711 aaPredicted RBP23.3■■□□□ 1.32
VIM-204ENST00000478746 PRR5LQ6MZQ0 368 aa23.3■■□□□ 1.32
VIM-204ENST00000478746 TBC1D2BQ9UPU7 963 aa23.3■■□□□ 1.32
VIM-204ENST00000478746 TEX13AQ9BXU3 409 aaPredicted RBP23.29■■□□□ 1.32
VIM-204ENST00000478746 TAOK3Q9H2K8 898 aa23.29■■□□□ 1.32
VIM-204ENST00000478746 ZNF330Q9Y3S2 320 aaPredicted RBP23.29■■□□□ 1.32
VIM-204ENST00000478746 LTBP3Q9NS15 1303 aa23.29■■□□□ 1.32
VIM-204ENST00000478746 CNKSR1Q969H4 720 aa23.28■■□□□ 1.32
VIM-204ENST00000478746 FER1L6Q2WGJ9 1857 aa23.28■■□□□ 1.32
VIM-204ENST00000478746 ANKRD31Q8N7Z5 1873 aa23.28■■□□□ 1.32
VIM-204ENST00000478746 NPHP1O15259 732 aa23.27■■□□□ 1.32
VIM-204ENST00000478746 POTEIP0CG38 1075 aa23.27■■□□□ 1.32
VIM-204ENST00000478746 POTEJP0CG39 1038 aa23.27■■□□□ 1.32
VIM-204ENST00000478746 ZNF496Q96IT1 587 aaPredicted RBP23.27■■□□□ 1.32
VIM-204ENST00000478746 SETDB2Q96T68 719 aa23.27■■□□□ 1.32
VIM-204ENST00000478746 DIAPH1O60610 1272 aaKnown RBP23.26■■□□□ 1.31
VIM-204ENST00000478746 AMER1Q5JTC6 1135 aaPredicted RBP23.26■■□□□ 1.31
VIM-204ENST00000478746 NPM2Q86SE8 214 aaKnown RBP23.26■■□□□ 1.31
VIM-204ENST00000478746 IL6STP40189 918 aaPredicted RBP23.25■■□□□ 1.31
VIM-204ENST00000478746 SOGA3Q5TF21 947 aa23.25■■□□□ 1.31
VIM-204ENST00000478746 STYK1Q6J9G0 422 aa23.25■■□□□ 1.31
VIM-204ENST00000478746 CNBD1Q8NA66 436 aa23.25■■□□□ 1.31
VIM-204ENST00000478746 TEFQ10587 303 aa23.24■■□□□ 1.31
VIM-204ENST00000478746 ZNF790Q6PG37 636 aa23.24■■□□□ 1.31
VIM-204ENST00000478746 HEG1Q9ULI3 1381 aa23.24■■□□□ 1.31
VIM-204ENST00000478746 UBR2Q8IWV8 1755 aa23.24■■□□□ 1.31
VIM-204ENST00000478746 IQCA1LA6NCM1 817 aa23.23■■□□□ 1.31
VIM-204ENST00000478746 FOXN1O15353 648 aa23.23■■□□□ 1.31
VIM-204ENST00000478746 SRGNP10124 158 aa23.23■■□□□ 1.31
VIM-204ENST00000478746 ST5P78524 1137 aa23.23■■□□□ 1.31
VIM-204ENST00000478746 PRPF40BQ6NWY9 871 aaKnown RBP23.23■■□□□ 1.31
VIM-204ENST00000478746 MASTLQ96GX5 879 aa23.23■■□□□ 1.31
VIM-204ENST00000478746 CLSPNQ9HAW4 1339 aa23.23■■□□□ 1.31
VIM-204ENST00000478746 A1BGP04217 495 aa23.22■■□□□ 1.31
VIM-204ENST00000478746 LDHDQ86WU2 507 aa23.22■■□□□ 1.31
VIM-204ENST00000478746 IL17REQ8NFR9 667 aa23.22■■□□□ 1.31
VIM-204ENST00000478746 CNTNAP1P78357 1384 aa23.22■■□□□ 1.31
VIM-204ENST00000478746 SLX4Q8IY92 1834 aa23.22■■□□□ 1.31
VIM-204ENST00000478746 PRDM10Q9NQV6 1147 aa23.21■■□□□ 1.31
VIM-204ENST00000478746 COL11A2P13942 1736 aaPredicted RBP23.2■■□□□ 1.3
VIM-204ENST00000478746 PASKQ96RG2 1323 aa23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms