RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 COL15A1P39059 1388 aa23.81■■□□□ 1.4
UPF3A-203ENST00000474056 N4BP2Q86UW6 1770 aaPredicted RBP23.81■■□□□ 1.4
UPF3A-203ENST00000474056 HTATSF1O43719 755 aaKnown RBP23.81■■□□□ 1.4
UPF3A-203ENST00000474056 KDM3BQ7LBC6 1761 aa23.8■■□□□ 1.4
UPF3A-203ENST00000474056 FMNL2Q96PY5 1086 aa23.8■■□□□ 1.4
UPF3A-203ENST00000474056 AFDNP55196 1824 aaKnown RBP23.78■■□□□ 1.4
UPF3A-203ENST00000474056 YBX3P16989 372 aaKnown RBP eCLIP23.78■■□□□ 1.4
UPF3A-203ENST00000474056 CANXP27824 592 aaKnown RBP23.78■■□□□ 1.4
UPF3A-203ENST00000474056 FKBP8Q14318 412 aa23.78■■□□□ 1.4
UPF3A-203ENST00000474056 NFE2L2Q16236 605 aa23.78■■□□□ 1.4
UPF3A-203ENST00000474056 MAPK8IP3Q9UPT6 1336 aa23.78■■□□□ 1.4
UPF3A-203ENST00000474056 STARD3NLO95772 234 aa23.77■■□□□ 1.4
UPF3A-203ENST00000474056 PNNQ9H307 717 aaKnown RBP23.77■■□□□ 1.4
UPF3A-203ENST00000474056 PRKRIP1Q9H875 184 aaPredicted RBP23.77■■□□□ 1.4
UPF3A-203ENST00000474056 C10orf71Q711Q0 1435 aa23.76■■□□□ 1.39
UPF3A-203ENST00000474056 USPL1Q5W0Q7 1092 aa23.76■■□□□ 1.39
UPF3A-203ENST00000474056 SCN7AQ01118 1682 aa23.76■■□□□ 1.39
UPF3A-203ENST00000474056 BRCA1P38398 1863 aaKnown RBP23.75■■□□□ 1.39
UPF3A-203ENST00000474056 ZPR1O75312 459 aa23.75■■□□□ 1.39
UPF3A-203ENST00000474056 TEX13AQ9BXU3 409 aaPredicted RBP23.75■■□□□ 1.39
UPF3A-203ENST00000474056 PARP3Q9Y6F1 533 aa23.75■■□□□ 1.39
UPF3A-203ENST00000474056 LAMB4A4D0S4 1761 aa23.75■■□□□ 1.39
UPF3A-203ENST00000474056 NARFQ9UHQ1 456 aa23.74■■□□□ 1.39
UPF3A-203ENST00000474056 PRAMEF22A3QJZ6 481 aa23.73■■□□□ 1.39
UPF3A-203ENST00000474056 EIF5P55010 431 aaKnown RBP23.73■■□□□ 1.39
UPF3A-203ENST00000474056 DDR1Q08345 913 aa23.73■■□□□ 1.39
UPF3A-203ENST00000474056 TAF7Q15545 349 aaPredicted RBP23.73■■□□□ 1.39
UPF3A-203ENST00000474056 THUMPD2Q9BTF0 503 aaKnown RBP23.73■■□□□ 1.39
UPF3A-203ENST00000474056 WWC3Q9ULE0 1092 aa23.73■■□□□ 1.39
UPF3A-203ENST00000474056 PXDNLA1KZ92 1463 aa23.73■■□□□ 1.39
UPF3A-203ENST00000474056 A1BGP04217 495 aa23.72■■□□□ 1.39
UPF3A-203ENST00000474056 MIS18AQ9NYP9 233 aa23.72■■□□□ 1.39
UPF3A-203ENST00000474056 USP16Q9Y5T5 823 aa23.72■■□□□ 1.39
UPF3A-203ENST00000474056 NRXN2Q9P2S2 1712 aa23.72■■□□□ 1.39
UPF3A-203ENST00000474056 BCORQ6W2J9 1755 aa23.72■■□□□ 1.39
UPF3A-203ENST00000474056 BCL2L12Q9HB09 334 aa23.71■■□□□ 1.39
UPF3A-203ENST00000474056 POLRMTO00411 1230 aaKnown RBP23.7■■□□□ 1.38
UPF3A-203ENST00000474056 TM4SF1P30408 202 aa23.7■■□□□ 1.38
UPF3A-203ENST00000474056 ZNF330Q9Y3S2 320 aaPredicted RBP23.7■■□□□ 1.38
UPF3A-203ENST00000474056 SNRPA1P09661 255 aaKnown RBP23.69■■□□□ 1.38
UPF3A-203ENST00000474056 CCDC146Q8IYE0 955 aa23.69■■□□□ 1.38
UPF3A-203ENST00000474056 GRIN3BO60391 1043 aa23.68■■□□□ 1.38
UPF3A-203ENST00000474056 IL6STP40189 918 aaPredicted RBP23.68■■□□□ 1.38
UPF3A-203ENST00000474056 PIP4K2AP48426 406 aaPredicted RBP23.68■■□□□ 1.38
UPF3A-203ENST00000474056 A0A087WZG4 1122 aa23.67■■□□□ 1.38
UPF3A-203ENST00000474056 RIPK4P57078 832 aa23.67■■□□□ 1.38
UPF3A-203ENST00000474056 TGFB2P61812 414 aa23.67■■□□□ 1.38
UPF3A-203ENST00000474056 NFIXQ14938 502 aa23.67■■□□□ 1.38
UPF3A-203ENST00000474056 WDR43Q15061 677 aaKnown RBP eCLIP23.67■■□□□ 1.38
UPF3A-203ENST00000474056 TMPOP42166 694 aaKnown RBP23.66■■□□□ 1.38
UPF3A-203ENST00000474056 PNISRQ8TF01 805 aaKnown RBP23.66■■□□□ 1.38
UPF3A-203ENST00000474056 A0A0G2JLW4 131 aa23.65■■□□□ 1.38
UPF3A-203ENST00000474056 ADAMTS8Q9UP79 889 aa23.65■■□□□ 1.38
UPF3A-203ENST00000474056 TBC1D2BQ9UPU7 963 aa23.65■■□□□ 1.38
UPF3A-203ENST00000474056 ARFGEF1Q9Y6D6 1849 aa23.65■■□□□ 1.38
UPF3A-203ENST00000474056 DPEP1P16444 411 aa23.64■■□□□ 1.37
UPF3A-203ENST00000474056 RRP7AQ9Y3A4 280 aaKnown RBP23.64■■□□□ 1.37
UPF3A-203ENST00000474056 ZNF316A6NFI3 1004 aaPredicted RBP23.63■■□□□ 1.37
UPF3A-203ENST00000474056 EIF4A1P60842 406 aaKnown RBP23.62■■□□□ 1.37
UPF3A-203ENST00000474056 ZNF784Q8NCA9 323 aaPredicted RBP23.62■■□□□ 1.37
UPF3A-203ENST00000474056 RUNDC1Q96C34 613 aa23.62■■□□□ 1.37
UPF3A-203ENST00000474056 DLEC1Q9Y238 1755 aa23.62■■□□□ 1.37
UPF3A-203ENST00000474056 ANKRD31Q8N7Z5 1873 aa23.62■■□□□ 1.37
UPF3A-203ENST00000474056 CAMTA2O94983 1202 aa23.61■■□□□ 1.37
UPF3A-203ENST00000474056 NEUROD2Q15784 382 aa23.61■■□□□ 1.37
UPF3A-203ENST00000474056 TBC1D9BQ66K14 1250 aa23.61■■□□□ 1.37
UPF3A-203ENST00000474056 BICDL1Q6ZP65 573 aa23.61■■□□□ 1.37
UPF3A-203ENST00000474056 NPM2Q86SE8 214 aaKnown RBP23.61■■□□□ 1.37
UPF3A-203ENST00000474056 NBPF26B4DH59 902 aa23.6■■□□□ 1.37
UPF3A-203ENST00000474056 SERPINB2P05120 415 aa23.6■■□□□ 1.37
UPF3A-203ENST00000474056 LMOD3Q0VAK6 560 aa23.6■■□□□ 1.37
UPF3A-203ENST00000474056 NBPF10Q6P3W6 841 aaKnown RBP23.6■■□□□ 1.37
UPF3A-203ENST00000474056 DZIP3Q86Y13 1208 aaKnown RBP23.6■■□□□ 1.37
UPF3A-203ENST00000474056 NBPF15Q8N660 670 aa23.6■■□□□ 1.37
UPF3A-203ENST00000474056 GIGYF1O75420 1035 aaPredicted RBP23.59■■□□□ 1.37
UPF3A-203ENST00000474056 KCNA3P22001 575 aa23.59■■□□□ 1.37
UPF3A-203ENST00000474056 TSPYL4Q9UJ04 414 aa23.59■■□□□ 1.37
UPF3A-203ENST00000474056 CARMIL3Q8ND23 1372 aa23.58■■□□□ 1.37
UPF3A-203ENST00000474056 BCS1LQ9Y276 419 aa23.58■■□□□ 1.37
UPF3A-203ENST00000474056 CHRNA5P30532 468 aa23.57■■□□□ 1.36
UPF3A-203ENST00000474056 NUP98P52948 1817 aa23.56■■□□□ 1.36
UPF3A-203ENST00000474056 TRIM35Q9UPQ4 493 aa23.56■■□□□ 1.36
UPF3A-203ENST00000474056 CCDC184Q52MB2 194 aa23.55■■□□□ 1.36
UPF3A-203ENST00000474056 COL11A2P13942 1736 aaPredicted RBP23.54■■□□□ 1.36
UPF3A-203ENST00000474056 PIM2Q9P1W9 311 aa23.54■■□□□ 1.36
UPF3A-203ENST00000474056 BABAM1Q9NWV8 329 aa23.53■■□□□ 1.36
UPF3A-203ENST00000474056 CACNA1SQ13698 1873 aa23.52■■□□□ 1.36
UPF3A-203ENST00000474056 PRR5LQ6MZQ0 368 aa23.5■■□□□ 1.35
UPF3A-203ENST00000474056 CLEC4GQ6UXB4 293 aa23.5■■□□□ 1.35
UPF3A-203ENST00000474056 CCDC24Q8N4L8 307 aa23.5■■□□□ 1.35
UPF3A-203ENST00000474056 SETDB2Q96T68 719 aa23.5■■□□□ 1.35
UPF3A-203ENST00000474056 ADCY9O60503 1353 aa23.5■■□□□ 1.35
UPF3A-203ENST00000474056 SBF1O95248 1867 aa23.49■■□□□ 1.35
UPF3A-203ENST00000474056 APAF1O14727 1248 aa23.49■■□□□ 1.35
UPF3A-203ENST00000474056 DALRD3Q5D0E6 543 aaKnown RBP23.49■■□□□ 1.35
UPF3A-203ENST00000474056 NGEFQ8N5V2 710 aa23.49■■□□□ 1.35
UPF3A-203ENST00000474056 ZNF652Q9Y2D9 606 aa23.49■■□□□ 1.35
UPF3A-203ENST00000474056 LAS1LQ9Y4W2 734 aaKnown RBP23.49■■□□□ 1.35
UPF3A-203ENST00000474056 CHL1O00533 1208 aa23.48■■□□□ 1.35
UPF3A-203ENST00000474056 MYL6BP14649 208 aa23.48■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms