RNA–Protein interactions for RNA: ENST00000472119.1

SCN9A-206, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 2

Gene SCN9A, Length 905 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-206ENST00000472119 GATA4P43694 442 aa11.55□□□□□ -0.56
SCN9A-206ENST00000472119 CHSY3Q70JA7 882 aa11.55□□□□□ -0.56
SCN9A-206ENST00000472119 NDFIP2Q9NV92 336 aa11.55□□□□□ -0.56
SCN9A-206ENST00000472119 KDM4CQ9H3R0 1056 aa11.53□□□□□ -0.56
SCN9A-206ENST00000472119 GPBP1L1Q9HC44 474 aaPredicted RBP11.53□□□□□ -0.56
SCN9A-206ENST00000472119 TOPBP1Q92547 1522 aa11.53□□□□□ -0.56
SCN9A-206ENST00000472119 MCCD1P59942 119 aaPredicted RBP11.52□□□□□ -0.57
SCN9A-206ENST00000472119 FHDC1Q9C0D6 1143 aaPredicted RBP11.52□□□□□ -0.57
SCN9A-206ENST00000472119 HRH3Q9Y5N1 445 aa11.52□□□□□ -0.57
SCN9A-206ENST00000472119 MYCP01106 439 aaPredicted RBP11.51□□□□□ -0.57
SCN9A-206ENST00000472119 ABCC8Q09428 1581 aa11.5□□□□□ -0.57
SCN9A-206ENST00000472119 LCE3BQ5TA77 95 aa11.5□□□□□ -0.57
SCN9A-206ENST00000472119 XAGE2Q96GT9 111 aa11.5□□□□□ -0.57
SCN9A-206ENST00000472119 DNMBPQ6XZF7 1577 aa11.5□□□□□ -0.57
SCN9A-206ENST00000472119 NR1H3Q13133 447 aa11.49□□□□□ -0.57
SCN9A-206ENST00000472119 ZNF592Q92610 1267 aa11.49□□□□□ -0.57
SCN9A-206ENST00000472119 CUX1P39880 1505 aa11.49□□□□□ -0.57
SCN9A-206ENST00000472119 FIGNL1Q6PIW4 674 aa11.48□□□□□ -0.57
SCN9A-206ENST00000472119 RHBDD1Q8TEB9 315 aa11.48□□□□□ -0.57
SCN9A-206ENST00000472119 GJD4Q96KN9 370 aaPredicted RBP11.48□□□□□ -0.57
SCN9A-206ENST00000472119 CRISPLD1Q9H336 500 aa11.48□□□□□ -0.57
SCN9A-206ENST00000472119 ZNF330Q9Y3S2 320 aaPredicted RBP11.48□□□□□ -0.57
SCN9A-206ENST00000472119 RSPO4Q2I0M5 234 aaPredicted RBP11.47□□□□□ -0.57
SCN9A-206ENST00000472119 FOXD4L6Q3SYB3 417 aaPredicted RBP11.47□□□□□ -0.57
SCN9A-206ENST00000472119 FOXD4L3Q6VB84 417 aaPredicted RBP11.47□□□□□ -0.57
SCN9A-206ENST00000472119 TRIM11Q96F44 468 aa11.47□□□□□ -0.57
SCN9A-206ENST00000472119 PLVAPQ9BX97 442 aa11.47□□□□□ -0.57
SCN9A-206ENST00000472119 PCDHGC4Q9Y5F7 938 aa11.47□□□□□ -0.57
SCN9A-206ENST00000472119 WRNQ14191 1432 aaPredicted RBP eCLIP11.46□□□□□ -0.57
SCN9A-206ENST00000472119 SPATA31C1P0DKV0 1188 aa11.46□□□□□ -0.57
SCN9A-206ENST00000472119 ADH6P28332 368 aa11.46□□□□□ -0.57
SCN9A-206ENST00000472119 ESCO1Q5FWF5 840 aa11.46□□□□□ -0.57
SCN9A-206ENST00000472119 CDCA7Q9BWT1 371 aaPredicted RBP11.46□□□□□ -0.57
SCN9A-206ENST00000472119 ZCCHC2Q9C0B9 1178 aaKnown RBP11.46□□□□□ -0.57
SCN9A-206ENST00000472119 PLA2G4AP47712 749 aa11.45□□□□□ -0.58
SCN9A-206ENST00000472119 TMEM259Q4ZIN3 620 aa11.45□□□□□ -0.58
SCN9A-206ENST00000472119 TBC1D9Q6ZT07 1266 aa11.44□□□□□ -0.58
SCN9A-206ENST00000472119 FCHSD1Q86WN1 690 aa11.44□□□□□ -0.58
SCN9A-206ENST00000472119 DNAAF2Q9NVR5 837 aaKnown RBP11.44□□□□□ -0.58
SCN9A-206ENST00000472119 POLA1P09884 1462 aaPredicted RBP11.44□□□□□ -0.58
SCN9A-206ENST00000472119 FGD5Q6ZNL6 1462 aa11.44□□□□□ -0.58
SCN9A-206ENST00000472119 DCDC2BA2VCK2 349 aa11.43□□□□□ -0.58
SCN9A-206ENST00000472119 KRTAP4-12Q9BQ66 201 aa11.43□□□□□ -0.58
SCN9A-206ENST00000472119 ZFP64Q9NPA5 681 aa11.43□□□□□ -0.58
SCN9A-206ENST00000472119 KLF15Q9UIH9 416 aa11.43□□□□□ -0.58
SCN9A-206ENST00000472119 RAD54L2Q9Y4B4 1467 aa11.43□□□□□ -0.58
SCN9A-206ENST00000472119 SOGA1O94964 1423 aa11.43□□□□□ -0.58
SCN9A-206ENST00000472119 ATXN7O15265 892 aaPredicted RBP11.42□□□□□ -0.58
SCN9A-206ENST00000472119 CD33P20138 364 aa11.42□□□□□ -0.58
SCN9A-206ENST00000472119 TLR1Q15399 786 aa11.42□□□□□ -0.58
SCN9A-206ENST00000472119 PPARGC1BQ86YN6 1023 aaKnown RBP11.42□□□□□ -0.58
SCN9A-206ENST00000472119 IFT140Q96RY7 1462 aa11.41□□□□□ -0.58
SCN9A-206ENST00000472119 STAU1O95793 577 aaKnown RBP11.41□□□□□ -0.58
SCN9A-206ENST00000472119 NKAPLQ5M9Q1 402 aa11.41□□□□□ -0.58
SCN9A-206ENST00000472119 CCDC85AQ96PX6 553 aaPredicted RBP11.41□□□□□ -0.58
SCN9A-206ENST00000472119 TPSG1Q9NRR2 321 aa11.41□□□□□ -0.58
SCN9A-206ENST00000472119 SYNJ1O43426 1573 aa11.41□□□□□ -0.58
SCN9A-206ENST00000472119 ARTNQ5T4W7 220 aa11.4□□□□□ -0.58
SCN9A-206ENST00000472119 NBPF11Q86T75 865 aa11.4□□□□□ -0.58
SCN9A-206ENST00000472119 ZNF608Q9ULD9 1512 aaPredicted RBP11.4□□□□□ -0.59
SCN9A-206ENST00000472119 MAPTP10636 758 aaKnown RBP11.39□□□□□ -0.59
SCN9A-206ENST00000472119 PCBP4P57723 403 aaKnown RBP11.39□□□□□ -0.59
SCN9A-206ENST00000472119 NLRP8Q86W28 1048 aa11.39□□□□□ -0.59
SCN9A-206ENST00000472119 AIDAQ96BJ3 306 aa11.39□□□□□ -0.59
SCN9A-206ENST00000472119 ETNK1Q9HBU6 452 aa11.39□□□□□ -0.59
SCN9A-206ENST00000472119 KHNYNO15037 678 aaKnown RBP11.38□□□□□ -0.59
SCN9A-206ENST00000472119 DYRK3O43781 588 aa11.38□□□□□ -0.59
SCN9A-206ENST00000472119 AVENQ9NQS1 362 aaPredicted RBP11.38□□□□□ -0.59
SCN9A-206ENST00000472119 TDRD9Q8NDG6 1382 aaKnown RBP11.38□□□□□ -0.59
SCN9A-206ENST00000472119 TOP2BQ02880 1626 aa11.38□□□□□ -0.59
SCN9A-206ENST00000472119 APBA3O96018 575 aa11.37□□□□□ -0.59
SCN9A-206ENST00000472119 ATP4AP20648 1035 aa11.37□□□□□ -0.59
SCN9A-206ENST00000472119 PRRT3Q5FWE3 981 aa11.37□□□□□ -0.59
SCN9A-206ENST00000472119 PCMTD1Q96MG8 357 aaPredicted RBP11.37□□□□□ -0.59
SCN9A-206ENST00000472119 HCN2Q9UL51 889 aa11.37□□□□□ -0.59
SCN9A-206ENST00000472119 AQRO60306 1485 aaKnown RBP eCLIP11.37□□□□□ -0.59
SCN9A-206ENST00000472119 TARBP1Q13395 1621 aaKnown RBP11.36□□□□□ -0.59
SCN9A-206ENST00000472119 SPDYE3A6NKU9 549 aa11.36□□□□□ -0.59
SCN9A-206ENST00000472119 TNP2Q05952 138 aa11.36□□□□□ -0.59
SCN9A-206ENST00000472119 FAM182BQ5T319 152 aa11.36□□□□□ -0.59
SCN9A-206ENST00000472119 C1orf216Q8TAB5 229 aa11.36□□□□□ -0.59
SCN9A-206ENST00000472119 PRR12Q9ULL5 1215 aa11.36□□□□□ -0.59
SCN9A-206ENST00000472119 BIVM-ERCC5R4GMW8 1640 aa11.35□□□□□ -0.59
SCN9A-206ENST00000472119 ARSJQ5FYB0 599 aaPredicted RBP11.35□□□□□ -0.59
SCN9A-206ENST00000472119 CEP126Q9P2H0 1117 aa11.35□□□□□ -0.59
SCN9A-206ENST00000472119 A0A1W2PNR3 127 aa11.34□□□□□ -0.59
SCN9A-206ENST00000472119 PRSS36Q5K4E3 855 aa11.33□□□□□ -0.6
SCN9A-206ENST00000472119 ZNF468Q5VIY5 522 aaPredicted RBP11.33□□□□□ -0.6
SCN9A-206ENST00000472119 FAM229AH3BQW9 127 aa11.31□□□□□ -0.6
SCN9A-206ENST00000472119 USP4Q13107 963 aa11.31□□□□□ -0.6
SCN9A-206ENST00000472119 NIFKQ9BYG3 293 aaKnown RBP11.31□□□□□ -0.6
SCN9A-206ENST00000472119 DOLKQ9UPQ8 538 aa11.31□□□□□ -0.6
SCN9A-206ENST00000472119 ABCA10Q8WWZ4 1543 aa11.3□□□□□ -0.6
SCN9A-206ENST00000472119 ALAS2P22557 587 aa11.3□□□□□ -0.6
SCN9A-206ENST00000472119 GJA3Q9Y6H8 435 aa11.3□□□□□ -0.6
SCN9A-206ENST00000472119 EIF4G3O43432 1585 aaKnown RBP11.29□□□□□ -0.6
SCN9A-206ENST00000472119 ELOA3CA0A087WX78 387 aaPredicted RBP11.29□□□□□ -0.6
SCN9A-206ENST00000472119 ELOA3DA6NLF2 546 aaPredicted RBP11.29□□□□□ -0.6
SCN9A-206ENST00000472119 TSGA10IPQ3SY00 556 aa11.29□□□□□ -0.6
SCN9A-206ENST00000472119 ELOA3BQ3SY89 546 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms