RNA–Protein interactions for RNA: ENST00000471445.5

SREBF1-210, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 936 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-210	ENST00000471445	AFDN	P55196	1824 aa	Known RBP	27.88	■■■□□ 2.05
SREBF1-210	ENST00000471445	HTATSF1	O43719	755 aa	Known RBP	27.88	■■■□□ 2.05
SREBF1-210	ENST00000471445	NRXN2	Q9P2S2	1712 aa		27.88	■■■□□ 2.05
SREBF1-210	ENST00000471445	PARP3	Q9Y6F1	533 aa		27.88	■■■□□ 2.05
SREBF1-210	ENST00000471445	KDM3B	Q7LBC6	1761 aa		27.88	■■■□□ 2.05
SREBF1-210	ENST00000471445	BTBD11	A6QL63	1104 aa		27.87	■■■□□ 2.05
SREBF1-210	ENST00000471445	MCM10	Q7L590	875 aa		27.87	■■■□□ 2.05
SREBF1-210	ENST00000471445	FMNL2	Q96PY5	1086 aa		27.87	■■■□□ 2.05
SREBF1-210	ENST00000471445	PLEKHF1	Q96S99	279 aa		27.87	■■■□□ 2.05
SREBF1-210	ENST00000471445	ZNF784	Q8NCA9	323 aa	Predicted RBP	27.86	■■■□□ 2.05
SREBF1-210	ENST00000471445	GOLGB1	Q14789	3259 aa	Known RBP	27.86	■■■□□ 2.05
SREBF1-210	ENST00000471445	KCNQ3	O43525	872 aa		27.85	■■■□□ 2.05
SREBF1-210	ENST00000471445	STARD3NL	O95772	234 aa		27.85	■■■□□ 2.05
SREBF1-210	ENST00000471445	DDR1	Q08345	913 aa		27.85	■■■□□ 2.05
SREBF1-210	ENST00000471445	NARF	Q9UHQ1	456 aa		27.85	■■■□□ 2.05
SREBF1-210	ENST00000471445	LAMB4	A4D0S4	1761 aa		27.85	■■■□□ 2.05
SREBF1-210	ENST00000471445	BCOR	Q6W2J9	1755 aa		27.84	■■■□□ 2.05
SREBF1-210	ENST00000471445	ZPR1	O75312	459 aa		27.84	■■■□□ 2.05
SREBF1-210	ENST00000471445	DCTN1	Q14203	1278 aa		27.84	■■■□□ 2.05
SREBF1-210	ENST00000471445	USPL1	Q5W0Q7	1092 aa		27.84	■■■□□ 2.05
SREBF1-210	ENST00000471445	TEX13A	Q9BXU3	409 aa	Predicted RBP	27.84	■■■□□ 2.05
SREBF1-210	ENST00000471445	NEFM	P07197	916 aa		27.83	■■■□□ 2.05
SREBF1-210	ENST00000471445	CANX	P27824	592 aa	Known RBP	27.83	■■■□□ 2.05
SREBF1-210	ENST00000471445	TGFB2	P61812	414 aa		27.83	■■■□□ 2.05
SREBF1-210	ENST00000471445	EIF5	P55010	431 aa	Known RBP	27.82	■■■□□ 2.04
SREBF1-210	ENST00000471445	MYBBP1A	Q9BQG0	1328 aa	Known RBP	27.82	■■■□□ 2.04
SREBF1-210	ENST00000471445	ARFGEF1	Q9Y6D6	1849 aa		27.81	■■■□□ 2.04
SREBF1-210	ENST00000471445	POLRMT	O00411	1230 aa	Known RBP	27.81	■■■□□ 2.04
SREBF1-210	ENST00000471445	TM4SF1	P30408	202 aa		27.81	■■■□□ 2.04
SREBF1-210	ENST00000471445	BCL2L12	Q9HB09	334 aa		27.8	■■■□□ 2.04
SREBF1-210	ENST00000471445	WWC3	Q9ULE0	1092 aa		27.8	■■■□□ 2.04
SREBF1-210	ENST00000471445	NFE2L2	Q16236	605 aa		27.78	■■■□□ 2.04
SREBF1-210	ENST00000471445	PNN	Q9H307	717 aa	Known RBP	27.78	■■■□□ 2.04
SREBF1-210	ENST00000471445	DLEC1	Q9Y238	1755 aa		27.78	■■■□□ 2.04
SREBF1-210	ENST00000471445	MAPK8IP3	Q9UPT6	1336 aa		27.77	■■■□□ 2.04
SREBF1-210	ENST00000471445	IL6ST	P40189	918 aa	Predicted RBP	27.77	■■■□□ 2.04
SREBF1-210	ENST00000471445		A0A087WZG4	1122 aa		27.76	■■■□□ 2.03
SREBF1-210	ENST00000471445	NFIX	Q14938	502 aa		27.76	■■■□□ 2.03
SREBF1-210	ENST00000471445		A0A0G2JLW4	131 aa		27.75	■■■□□ 2.03
SREBF1-210	ENST00000471445	DPEP1	P16444	411 aa		27.75	■■■□□ 2.03
SREBF1-210	ENST00000471445	ADCY9	O60503	1353 aa		27.74	■■■□□ 2.03
SREBF1-210	ENST00000471445	A1BG	P04217	495 aa		27.74	■■■□□ 2.03
SREBF1-210	ENST00000471445	TAF7	Q15545	349 aa	Predicted RBP	27.74	■■■□□ 2.03
SREBF1-210	ENST00000471445	PRAMEF22	A3QJZ6	481 aa		27.73	■■■□□ 2.03
SREBF1-210	ENST00000471445	SNRPA1	P09661	255 aa	Known RBP	27.73	■■■□□ 2.03
SREBF1-210	ENST00000471445	USP16	Q9Y5T5	823 aa		27.73	■■■□□ 2.03
SREBF1-210	ENST00000471445	ANKRD31	Q8N7Z5	1873 aa		27.71	■■■□□ 2.03
SREBF1-210	ENST00000471445	ZNF330	Q9Y3S2	320 aa	Predicted RBP	27.71	■■■□□ 2.03
SREBF1-210	ENST00000471445	KCNA3	P22001	575 aa		27.7	■■■□□ 2.02
SREBF1-210	ENST00000471445	PNISR	Q8TF01	805 aa	Known RBP	27.7	■■■□□ 2.02
SREBF1-210	ENST00000471445	BCS1L	Q9Y276	419 aa		27.7	■■■□□ 2.02
SREBF1-210	ENST00000471445	ATP10D	Q9P241	1426 aa		27.68	■■■□□ 2.02
SREBF1-210	ENST00000471445	SERPINB2	P05120	415 aa		27.68	■■■□□ 2.02
SREBF1-210	ENST00000471445	THUMPD2	Q9BTF0	503 aa	Known RBP	27.68	■■■□□ 2.02
SREBF1-210	ENST00000471445	PRKRIP1	Q9H875	184 aa	Predicted RBP	27.68	■■■□□ 2.02
SREBF1-210	ENST00000471445	MIS18A	Q9NYP9	233 aa		27.68	■■■□□ 2.02
SREBF1-210	ENST00000471445	TBC1D2B	Q9UPU7	963 aa		27.68	■■■□□ 2.02
SREBF1-210	ENST00000471445	CAMTA2	O94983	1202 aa		27.67	■■■□□ 2.02
SREBF1-210	ENST00000471445	CARMIL3	Q8ND23	1372 aa		27.67	■■■□□ 2.02
SREBF1-210	ENST00000471445	ZEB1	P37275	1124 aa	Predicted RBP	27.66	■■■□□ 2.02
SREBF1-210	ENST00000471445	PIP4K2A	P48426	406 aa	Predicted RBP	27.66	■■■□□ 2.02
SREBF1-210	ENST00000471445	TBC1D9B	Q66K14	1250 aa		27.66	■■■□□ 2.02
SREBF1-210	ENST00000471445	COL11A2	P13942	1736 aa	Predicted RBP	27.65	■■■□□ 2.02
SREBF1-210	ENST00000471445	PIM2	Q9P1W9	311 aa		27.65	■■■□□ 2.02
SREBF1-210	ENST00000471445	CHRNA5	P30532	468 aa		27.64	■■■□□ 2.02
SREBF1-210	ENST00000471445	BICDL1	Q6ZP65	573 aa		27.64	■■■□□ 2.02
SREBF1-210	ENST00000471445	NPM2	Q86SE8	214 aa	Known RBP	27.64	■■■□□ 2.02
SREBF1-210	ENST00000471445	DZIP3	Q86Y13	1208 aa	Known RBP	27.64	■■■□□ 2.02
SREBF1-210	ENST00000471445	NBPF26	B4DH59	902 aa		27.62	■■■□□ 2.01
SREBF1-210	ENST00000471445	TMPO	P42166	694 aa	Known RBP	27.62	■■■□□ 2.01
SREBF1-210	ENST00000471445	RIPK4	P57078	832 aa		27.62	■■■□□ 2.01
SREBF1-210	ENST00000471445	EIF4A1	P60842	406 aa	Known RBP	27.62	■■■□□ 2.01
SREBF1-210	ENST00000471445	NBPF10	Q6P3W6	841 aa	Known RBP	27.62	■■■□□ 2.01
SREBF1-210	ENST00000471445	NBPF15	Q8N660	670 aa		27.62	■■■□□ 2.01
SREBF1-210	ENST00000471445	GIGYF1	O75420	1035 aa	Predicted RBP	27.6	■■■□□ 2.01
SREBF1-210	ENST00000471445	LMOD3	Q0VAK6	560 aa		27.6	■■■□□ 2.01
SREBF1-210	ENST00000471445	DALRD3	Q5D0E6	543 aa	Known RBP	27.6	■■■□□ 2.01
SREBF1-210	ENST00000471445	WDR43	Q15061	677 aa	Known RBP eCLIP	27.59	■■■□□ 2.01
SREBF1-210	ENST00000471445	CCDC146	Q8IYE0	955 aa		27.59	■■■□□ 2.01
SREBF1-210	ENST00000471445	SBF1	O95248	1867 aa		27.58	■■■□□ 2.01
SREBF1-210	ENST00000471445	RGL2	O15211	777 aa		27.57	■■■□□ 2
SREBF1-210	ENST00000471445	PRR5L	Q6MZQ0	368 aa		27.57	■■■□□ 2
SREBF1-210	ENST00000471445	NUP98	P52948	1817 aa		27.57	■■■□□ 2
SREBF1-210	ENST00000471445	ARFGEF2	Q9Y6D5	1785 aa		27.56	■■■□□ 2
SREBF1-210	ENST00000471445	CLEC4G	Q6UXB4	293 aa		27.56	■■■□□ 2
SREBF1-210	ENST00000471445	RUNDC1	Q96C34	613 aa		27.56	■■■□□ 2
SREBF1-210	ENST00000471445	TSPYL4	Q9UJ04	414 aa		27.56	■■■□□ 2
SREBF1-210	ENST00000471445	ARHGAP27	Q6ZUM4	889 aa		27.55	■■■□□ 2
SREBF1-210	ENST00000471445	SETDB2	Q96T68	719 aa		27.55	■■■□□ 2
SREBF1-210	ENST00000471445	BABAM1	Q9NWV8	329 aa		27.55	■■■□□ 2
SREBF1-210	ENST00000471445	ZNF652	Q9Y2D9	606 aa		27.55	■■■□□ 2
SREBF1-210	ENST00000471445	RRP7A	Q9Y3A4	280 aa	Known RBP	27.55	■■■□□ 2
SREBF1-210	ENST00000471445	CACNA1S	Q13698	1873 aa		27.54	■■■□□ 2
SREBF1-210	ENST00000471445	ADAMTS8	Q9UP79	889 aa		27.54	■■■□□ 2
SREBF1-210	ENST00000471445	C1QTNF8	P60827	252 aa		27.53	■■■□□ 2
SREBF1-210	ENST00000471445	C2CD5	Q86YS7	1000 aa		27.53	■■■□□ 2
SREBF1-210	ENST00000471445	CNBD1	Q8NA66	436 aa		27.53	■■■□□ 2
SREBF1-210	ENST00000471445	BRIP1	Q9BX63	1249 aa		27.52	■■■□□ 2
SREBF1-210	ENST00000471445	ERBB4	Q15303	1308 aa		27.51	■■□□□ 1.99
SREBF1-210	ENST00000471445		H0YIN7	160 aa		27.5	■■□□□ 1.99

Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms