RNA–Protein interactions for RNA: ENST00000469778.1

SPTLC1-204, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 2

Gene SPTLC1, Length 490 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-204ENST00000469778 INTS5Q6P9B9 1019 aaKnown RBP16.33■□□□□ 0.2
SPTLC1-204ENST00000469778 NPM2Q86SE8 214 aaKnown RBP16.33■□□□□ 0.2
SPTLC1-204ENST00000469778 SLC16A10Q8TF71 515 aa16.33■□□□□ 0.2
SPTLC1-204ENST00000469778 USP16Q9Y5T5 823 aa16.33■□□□□ 0.2
SPTLC1-204ENST00000469778 C5P01031 1676 aa16.33■□□□□ 0.2
SPTLC1-204ENST00000469778 A0A087WZG4 1122 aa16.32■□□□□ 0.2
SPTLC1-204ENST00000469778 TRAPPC3LQ5T215 181 aa16.32■□□□□ 0.2
SPTLC1-204ENST00000469778 DUSP27Q5VZP5 1158 aa16.32■□□□□ 0.2
SPTLC1-204ENST00000469778 TRMT2AQ8IZ69 625 aaKnown RBP16.32■□□□□ 0.2
SPTLC1-204ENST00000469778 ZNF428Q96B54 188 aa16.32■□□□□ 0.2
SPTLC1-204ENST00000469778 NUP188Q5SRE5 1749 aa16.31■□□□□ 0.2
SPTLC1-204ENST00000469778 FANCIQ9NVI1 1328 aa16.31■□□□□ 0.2
SPTLC1-204ENST00000469778 RGL2O15211 777 aa16.31■□□□□ 0.2
SPTLC1-204ENST00000469778 GNPATO15228 680 aa16.31■□□□□ 0.2
SPTLC1-204ENST00000469778 SENP3-EIF4A1A0A087X0R7 540 aa16.3■□□□□ 0.2
SPTLC1-204ENST00000469778 CT47B1P0C2W7 299 aaPredicted RBP16.3■□□□□ 0.2
SPTLC1-204ENST00000469778 ZNF827Q17R98 1081 aa16.3■□□□□ 0.2
SPTLC1-204ENST00000469778 ANO8Q9HCE9 1232 aaPredicted RBP16.3■□□□□ 0.2
SPTLC1-204ENST00000469778 C4BP0C0L5 1744 aa16.3■□□□□ 0.2
SPTLC1-204ENST00000469778 TAF1LQ8IZX4 1826 aa16.29■□□□□ 0.2
SPTLC1-204ENST00000469778 EIF5P55010 431 aaKnown RBP16.29■□□□□ 0.2
SPTLC1-204ENST00000469778 TWISTNBQ3B726 338 aaPredicted RBP16.29■□□□□ 0.2
SPTLC1-204ENST00000469778 CCDC30Q5VVM6 783 aa16.29■□□□□ 0.2
SPTLC1-204ENST00000469778 C8orf58Q8NAV2 365 aa16.29■□□□□ 0.2
SPTLC1-204ENST00000469778 TSR2Q969E8 191 aaKnown RBP16.29■□□□□ 0.2
SPTLC1-204ENST00000469778 DBF4Q9UBU7 674 aaPredicted RBP16.29■□□□□ 0.2
SPTLC1-204ENST00000469778 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.28■□□□□ 0.2
SPTLC1-204ENST00000469778 R3HDM1Q15032 1099 aaKnown RBP16.28■□□□□ 0.2
SPTLC1-204ENST00000469778 HDGFL1Q5TGJ6 251 aa16.28■□□□□ 0.2
SPTLC1-204ENST00000469778 SPINK5Q9NQ38 1064 aaPredicted RBP16.28■□□□□ 0.2
SPTLC1-204ENST00000469778 PRAMEF22A3QJZ6 481 aa16.27■□□□□ 0.2
SPTLC1-204ENST00000469778 A1BGP04217 495 aa16.27■□□□□ 0.2
SPTLC1-204ENST00000469778 CANXP27824 592 aaKnown RBP16.27■□□□□ 0.2
SPTLC1-204ENST00000469778 RFC4P35249 363 aa16.27■□□□□ 0.2
SPTLC1-204ENST00000469778 DDX21Q9NR30 783 aaKnown RBP eCLIP16.27■□□□□ 0.2
SPTLC1-204ENST00000469778 ZBTB1Q9Y2K1 713 aa16.27■□□□□ 0.2
SPTLC1-204ENST00000469778 COL5A3P25940 1745 aaPredicted RBP16.27■□□□□ 0.19
SPTLC1-204ENST00000469778 TJP1Q07157 1748 aa16.27■□□□□ 0.19
SPTLC1-204ENST00000469778 PNPLA7Q6ZV29 1317 aa16.26■□□□□ 0.19
SPTLC1-204ENST00000469778 EIF2S2P20042 333 aaKnown RBP16.26■□□□□ 0.19
SPTLC1-204ENST00000469778 EXOSC9Q06265 439 aaKnown RBP16.26■□□□□ 0.19
SPTLC1-204ENST00000469778 ARHGEF1Q92888 912 aaKnown RBP16.26■□□□□ 0.19
SPTLC1-204ENST00000469778 HYPKQ9NX55 129 aa16.26■□□□□ 0.19
SPTLC1-204ENST00000469778 NBPF26B4DH59 902 aa16.25■□□□□ 0.19
SPTLC1-204ENST00000469778 ZPR1O75312 459 aa16.25■□□□□ 0.19
SPTLC1-204ENST00000469778 VAMP4O75379 141 aa16.25■□□□□ 0.19
SPTLC1-204ENST00000469778 NBPF10Q6P3W6 841 aaKnown RBP16.25■□□□□ 0.19
SPTLC1-204ENST00000469778 COL23A1Q86Y22 540 aaPredicted RBP16.25■□□□□ 0.19
SPTLC1-204ENST00000469778 NLGN1Q8N2Q7 840 aa16.25■□□□□ 0.19
SPTLC1-204ENST00000469778 NBPF15Q8N660 670 aa16.25■□□□□ 0.19
SPTLC1-204ENST00000469778 CDCA7LQ96GN5 454 aa16.25■□□□□ 0.19
SPTLC1-204ENST00000469778 STK31Q9BXU1 1019 aa16.25■□□□□ 0.19
SPTLC1-204ENST00000469778 NARFQ9UHQ1 456 aa16.25■□□□□ 0.19
SPTLC1-204ENST00000469778 ELL2O00472 640 aaPredicted RBP16.24■□□□□ 0.19
SPTLC1-204ENST00000469778 KRT24Q2M2I5 525 aa16.24■□□□□ 0.19
SPTLC1-204ENST00000469778 QSER1Q2KHR3 1735 aa16.24■□□□□ 0.19
SPTLC1-204ENST00000469778 MSH5O43196 834 aa16.23■□□□□ 0.19
SPTLC1-204ENST00000469778 PDIA6Q15084 440 aa16.23■□□□□ 0.19
SPTLC1-204ENST00000469778 CLEC4GQ6UXB4 293 aa16.23■□□□□ 0.19
SPTLC1-204ENST00000469778 TSPYL6Q8N831 410 aa16.23■□□□□ 0.19
SPTLC1-204ENST00000469778 MTFR1LQ9H019 292 aa16.23■□□□□ 0.19
SPTLC1-204ENST00000469778 COL15A1P39059 1388 aa16.23■□□□□ 0.19
SPTLC1-204ENST00000469778 PSDA5PKW4 1024 aaPredicted RBP16.22■□□□□ 0.19
SPTLC1-204ENST00000469778 ERVV-1B6SEH8 477 aa16.22■□□□□ 0.19
SPTLC1-204ENST00000469778 PHF14O94880 888 aa16.22■□□□□ 0.19
SPTLC1-204ENST00000469778 MYH14Q7Z406 1995 aaKnown RBP16.22■□□□□ 0.19
SPTLC1-204ENST00000469778 USP42Q9H9J4 1324 aaKnown RBP16.21■□□□□ 0.19
SPTLC1-204ENST00000469778 LAMB4A4D0S4 1761 aa16.21■□□□□ 0.19
SPTLC1-204ENST00000469778 DZIP3Q86Y13 1208 aaKnown RBP16.21■□□□□ 0.19
SPTLC1-204ENST00000469778 ZNF652Q9Y2D9 606 aa16.21■□□□□ 0.19
SPTLC1-204ENST00000469778 UBR3Q6ZT12 1888 aa16.2■□□□□ 0.18
SPTLC1-204ENST00000469778 MYL6BP14649 208 aa16.2■□□□□ 0.18
SPTLC1-204ENST00000469778 ALDH1L2Q3SY69 923 aa16.2■□□□□ 0.18
SPTLC1-204ENST00000469778 KIF6Q6ZMV9 814 aa16.2■□□□□ 0.18
SPTLC1-204ENST00000469778 LRP10Q7Z4F1 713 aa16.2■□□□□ 0.18
SPTLC1-204ENST00000469778 AMIGO3Q86WK7 504 aa16.2■□□□□ 0.18
SPTLC1-204ENST00000469778 SPON1Q9HCB6 807 aa16.2■□□□□ 0.18
SPTLC1-204ENST00000469778 CHPF2Q9P2E5 772 aa16.2■□□□□ 0.18
SPTLC1-204ENST00000469778 DDX58O95786 925 aaKnown RBP16.19■□□□□ 0.18
SPTLC1-204ENST00000469778 SLC4A2P04920 1241 aa16.19■□□□□ 0.18
SPTLC1-204ENST00000469778 ZNF330Q9Y3S2 320 aaPredicted RBP16.19■□□□□ 0.18
SPTLC1-204ENST00000469778 GYS1P13807 737 aa16.18■□□□□ 0.18
SPTLC1-204ENST00000469778 COPS6Q7L5N1 327 aa16.18■□□□□ 0.18
SPTLC1-204ENST00000469778 TBC1D2BQ9UPU7 963 aa16.18■□□□□ 0.18
SPTLC1-204ENST00000469778 MAP3K15Q6ZN16 1313 aa16.18■□□□□ 0.18
SPTLC1-204ENST00000469778 POLD1P28340 1107 aa16.17■□□□□ 0.18
SPTLC1-204ENST00000469778 BRPF1P55201 1214 aaPredicted RBP16.17■□□□□ 0.18
SPTLC1-204ENST00000469778 HSP90AB3PQ58FF7 597 aa16.17■□□□□ 0.18
SPTLC1-204ENST00000469778 ANKRD13DQ6ZTN6 518 aa16.17■□□□□ 0.18
SPTLC1-204ENST00000469778 PLBD2Q8NHP8 589 aa16.17■□□□□ 0.18
SPTLC1-204ENST00000469778 NECTIN2Q92692 538 aa16.17■□□□□ 0.18
SPTLC1-204ENST00000469778 ARXQ96QS3 562 aa16.17■□□□□ 0.18
SPTLC1-204ENST00000469778 CAMTA2O94983 1202 aa16.16■□□□□ 0.18
SPTLC1-204ENST00000469778 PROSER3Q2NL68 480 aa16.16■□□□□ 0.18
SPTLC1-204ENST00000469778 USPL1Q5W0Q7 1092 aa16.16■□□□□ 0.18
SPTLC1-204ENST00000469778 XAGE3Q8WTP9 111 aa16.16■□□□□ 0.18
SPTLC1-204ENST00000469778 PIP4K2AP48426 406 aaPredicted RBP16.15■□□□□ 0.18
SPTLC1-204ENST00000469778 PDGFDQ9GZP0 370 aaPredicted RBP16.15■□□□□ 0.18
SPTLC1-204ENST00000469778 CASZ1Q86V15 1759 aa16.14■□□□□ 0.17
SPTLC1-204ENST00000469778 ZBTB7AO95365 584 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms