RNA–Protein interactions for RNA: ENST00000469739.6

TOP3A-203, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 3,196 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-203ENST00000469739 LRRCC1Q9C099 1032 aa11.59□□□□□ -0.55
TOP3A-203ENST00000469739 CHMP5Q9NZZ3 219 aa11.59□□□□□ -0.55
TOP3A-203ENST00000469739 KCNH5Q8NCM2 988 aa11.58□□□□□ -0.56
TOP3A-203ENST00000469739 SRCIN1Q9C0H9 1055 aa11.58□□□□□ -0.56
TOP3A-203ENST00000469739 CCDC9Q9Y3X0 531 aaKnown RBP11.58□□□□□ -0.56
TOP3A-203ENST00000469739 MCM4P33991 863 aa11.58□□□□□ -0.56
TOP3A-203ENST00000469739 ILDR1Q86SU0 546 aaPredicted RBP11.58□□□□□ -0.56
TOP3A-203ENST00000469739 ARHGEF25Q86VW2 580 aa11.58□□□□□ -0.56
TOP3A-203ENST00000469739 LARP6Q9BRS8 491 aaKnown RBP11.58□□□□□ -0.56
TOP3A-203ENST00000469739 PA2G4Q9UQ80 394 aaKnown RBP11.58□□□□□ -0.56
TOP3A-203ENST00000469739 GNAI3P08754 354 aa11.57□□□□□ -0.56
TOP3A-203ENST00000469739 ANO2Q9NQ90 1003 aa11.57□□□□□ -0.56
TOP3A-203ENST00000469739 PHRF1Q9P1Y6 1649 aaKnown RBP11.57□□□□□ -0.56
TOP3A-203ENST00000469739 TRPM3Q9HCF6 1732 aaPredicted RBP11.57□□□□□ -0.56
TOP3A-203ENST00000469739 NFATC2IPQ8NCF5 419 aa11.57□□□□□ -0.56
TOP3A-203ENST00000469739 SIL1Q9H173 461 aa11.57□□□□□ -0.56
TOP3A-203ENST00000469739 C9orf78Q9NZ63 289 aaPredicted RBP11.57□□□□□ -0.56
TOP3A-203ENST00000469739 MAP3K2Q9Y2U5 619 aa11.57□□□□□ -0.56
TOP3A-203ENST00000469739 MX1P20591 662 aa11.56□□□□□ -0.56
TOP3A-203ENST00000469739 SSFA2P28290 1259 aa11.56□□□□□ -0.56
TOP3A-203ENST00000469739 TNPO1Q92973 898 aaKnown RBP11.56□□□□□ -0.56
TOP3A-203ENST00000469739 STRCP1A6NGW2 1772 aa11.56□□□□□ -0.56
TOP3A-203ENST00000469739 RGPD2P0DJD1 1756 aa11.56□□□□□ -0.56
TOP3A-203ENST00000469739 RNMTO43148 476 aaKnown RBP11.56□□□□□ -0.56
TOP3A-203ENST00000469739 PKP1Q13835 747 aa11.56□□□□□ -0.56
TOP3A-203ENST00000469739 CASC1Q6TDU7 716 aa11.56□□□□□ -0.56
TOP3A-203ENST00000469739 DNAAF4Q8WXU2 420 aa11.56□□□□□ -0.56
TOP3A-203ENST00000469739 RAPGEF4Q8WZA2 1011 aa11.56□□□□□ -0.56
TOP3A-203ENST00000469739 KIF1AQ12756 1690 aa11.55□□□□□ -0.56
TOP3A-203ENST00000469739 K7ELQ4 463 aaPredicted RBP11.55□□□□□ -0.56
TOP3A-203ENST00000469739 ATP8B2P98198 1209 aa11.55□□□□□ -0.56
TOP3A-203ENST00000469739 L1TD1Q5T7N2 865 aaKnown RBP11.55□□□□□ -0.56
TOP3A-203ENST00000469739 KLHDC4Q8TBB5 520 aa11.55□□□□□ -0.56
TOP3A-203ENST00000469739 DDX54Q8TDD1 881 aaKnown RBP11.55□□□□□ -0.56
TOP3A-203ENST00000469739 USP26Q9BXU7 913 aa11.55□□□□□ -0.56
TOP3A-203ENST00000469739 UPF3BQ9BZI7 483 aaKnown RBP11.55□□□□□ -0.56
TOP3A-203ENST00000469739 HTATSF1O43719 755 aaKnown RBP11.55□□□□□ -0.56
TOP3A-203ENST00000469739 ZNF330Q9Y3S2 320 aaPredicted RBP11.55□□□□□ -0.56
TOP3A-203ENST00000469739 KAT6BQ8WYB5 2073 aa11.55□□□□□ -0.56
TOP3A-203ENST00000469739 TRAK2O60296 914 aa11.55□□□□□ -0.56
TOP3A-203ENST00000469739 AKAP4Q5JQC9 854 aa11.55□□□□□ -0.56
TOP3A-203ENST00000469739 ZGPATQ8N5A5 531 aaKnown RBP11.55□□□□□ -0.56
TOP3A-203ENST00000469739 IL25Q9H293 177 aa11.55□□□□□ -0.56
TOP3A-203ENST00000469739 AK9Q5TCS8 1911 aa11.54□□□□□ -0.56
TOP3A-203ENST00000469739 SOS1Q07889 1333 aaPredicted RBP11.54□□□□□ -0.56
TOP3A-203ENST00000469739 C19orf44Q9H6X5 657 aa11.54□□□□□ -0.56
TOP3A-203ENST00000469739 PXDNQ92626 1479 aa11.54□□□□□ -0.56
TOP3A-203ENST00000469739 NCLP19338 710 aaKnown RBP11.54□□□□□ -0.56
TOP3A-203ENST00000469739 NEK4P51957 841 aa11.54□□□□□ -0.56
TOP3A-203ENST00000469739 PALD1Q9ULE6 856 aa11.54□□□□□ -0.56
TOP3A-203ENST00000469739 SLIT3O75094 1523 aa11.54□□□□□ -0.56
TOP3A-203ENST00000469739 ERC2O15083 957 aa11.52□□□□□ -0.57
TOP3A-203ENST00000469739 TMEM94Q12767 1356 aa11.52□□□□□ -0.57
TOP3A-203ENST00000469739 FAM208AQ9UK61 1670 aaKnown RBP11.52□□□□□ -0.57
TOP3A-203ENST00000469739 GIGYF1O75420 1035 aaPredicted RBP11.52□□□□□ -0.57
TOP3A-203ENST00000469739 CLCN1P35523 988 aa11.52□□□□□ -0.57
TOP3A-203ENST00000469739 PANK2Q9BZ23 570 aa11.52□□□□□ -0.57
TOP3A-203ENST00000469739 ATP5J2-PTCD1G3V325 749 aa11.51□□□□□ -0.57
TOP3A-203ENST00000469739 PTCD1O75127 700 aaKnown RBP11.51□□□□□ -0.57
TOP3A-203ENST00000469739 BEND3Q5T5X7 828 aa11.51□□□□□ -0.57
TOP3A-203ENST00000469739 RIC3Q7Z5B4 369 aa11.51□□□□□ -0.57
TOP3A-203ENST00000469739 RHPN1Q8TCX5 695 aa11.51□□□□□ -0.57
TOP3A-203ENST00000469739 STRN4Q9NRL3 753 aa11.51□□□□□ -0.57
TOP3A-203ENST00000469739 C1orf167Q5SNV9 1468 aa11.51□□□□□ -0.57
TOP3A-203ENST00000469739 A0A0G2JS52 829 aa11.51□□□□□ -0.57
TOP3A-203ENST00000469739 CWC27Q6UX04 472 aaKnown RBP11.51□□□□□ -0.57
TOP3A-203ENST00000469739 DBF4Q9UBU7 674 aaPredicted RBP11.51□□□□□ -0.57
TOP3A-203ENST00000469739 SPG7Q9UQ90 795 aa11.51□□□□□ -0.57
TOP3A-203ENST00000469739 ALS2Q96Q42 1657 aa11.51□□□□□ -0.57
TOP3A-203ENST00000469739 USP16Q9Y5T5 823 aa11.51□□□□□ -0.57
TOP3A-203ENST00000469739 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.51□□□□□ -0.57
TOP3A-203ENST00000469739 ZNF496Q96IT1 587 aaPredicted RBP11.5□□□□□ -0.57
TOP3A-203ENST00000469739 CCDC8Q9H0W5 538 aaPredicted RBP11.5□□□□□ -0.57
TOP3A-203ENST00000469739 ERBB3P21860 1342 aa11.5□□□□□ -0.57
TOP3A-203ENST00000469739 REC8O95072 547 aa11.5□□□□□ -0.57
TOP3A-203ENST00000469739 CPA1P15085 419 aa11.5□□□□□ -0.57
TOP3A-203ENST00000469739 AMOTQ4VCS5 1084 aa11.5□□□□□ -0.57
TOP3A-203ENST00000469739 SNX21Q969T3 373 aa11.5□□□□□ -0.57
TOP3A-203ENST00000469739 NDUFB9Q9Y6M9 179 aa11.5□□□□□ -0.57
TOP3A-203ENST00000469739 COPS6Q7L5N1 327 aa11.49□□□□□ -0.57
TOP3A-203ENST00000469739 RGPD5Q99666 1765 aa11.49□□□□□ -0.57
TOP3A-203ENST00000469739 CAMTA1Q9Y6Y1 1673 aa11.49□□□□□ -0.57
TOP3A-203ENST00000469739 TATP17735 454 aaPredicted RBP11.49□□□□□ -0.57
TOP3A-203ENST00000469739 MCTP1Q6DN14 999 aa11.49□□□□□ -0.57
TOP3A-203ENST00000469739 CEMIPQ8WUJ3 1361 aa11.49□□□□□ -0.57
TOP3A-203ENST00000469739 LMO7Q8WWI1 1683 aa11.49□□□□□ -0.57
TOP3A-203ENST00000469739 CHMLP26374 656 aa11.49□□□□□ -0.57
TOP3A-203ENST00000469739 RABEP1Q15276 862 aa11.49□□□□□ -0.57
TOP3A-203ENST00000469739 XAGE3Q8WTP9 111 aa11.49□□□□□ -0.57
TOP3A-203ENST00000469739 MYD88Q99836 296 aa11.49□□□□□ -0.57
TOP3A-203ENST00000469739 ESYT1Q9BSJ8 1104 aa11.49□□□□□ -0.57
TOP3A-203ENST00000469739 CHMP3Q9Y3E7 222 aa11.49□□□□□ -0.57
TOP3A-203ENST00000469739 ADCY9O60503 1353 aa11.48□□□□□ -0.57
TOP3A-203ENST00000469739 IBTKQ9P2D0 1353 aaPredicted RBP11.48□□□□□ -0.57
TOP3A-203ENST00000469739 ZNF790Q6PG37 636 aa11.48□□□□□ -0.57
TOP3A-203ENST00000469739 MST1RQ04912 1400 aa11.48□□□□□ -0.57
TOP3A-203ENST00000469739 PIAS4Q8N2W9 510 aaPredicted RBP11.48□□□□□ -0.57
TOP3A-203ENST00000469739 SSH3Q8TE77 659 aa11.48□□□□□ -0.57
TOP3A-203ENST00000469739 ST18O60284 1047 aa11.47□□□□□ -0.57
TOP3A-203ENST00000469739 TOM1L2Q6ZVM7 507 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms