RNA–Protein interactions for RNA: ENST00000466579.1

SDCCAG3-208, Transcript of Serologically defined colon cancer antigen 3, human

TSL 1 (best)

Gene SDCCAG3, Length 496 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SDCCAG3-208	ENST00000466579	RTCB	Q9Y3I0	505 aa	Known RBP	12.47	□□□□□ -0.41
SDCCAG3-208	ENST00000466579	APAF1	O14727	1248 aa		12.46	□□□□□ -0.41
SDCCAG3-208	ENST00000466579	CCDC87	Q9NVE4	849 aa		12.46	□□□□□ -0.41
SDCCAG3-208	ENST00000466579	RRP7A	Q9Y3A4	280 aa	Known RBP	12.46	□□□□□ -0.41
SDCCAG3-208	ENST00000466579	LAMB4	A4D0S4	1761 aa		12.46	□□□□□ -0.42
SDCCAG3-208	ENST00000466579	SOS1	Q07889	1333 aa	Predicted RBP	12.45	□□□□□ -0.42
SDCCAG3-208	ENST00000466579	STARD3NL	O95772	234 aa		12.45	□□□□□ -0.42
SDCCAG3-208	ENST00000466579	SNRPA1	P09661	255 aa	Known RBP	12.45	□□□□□ -0.42
SDCCAG3-208	ENST00000466579	SMIM5	Q71RC9	77 aa		12.45	□□□□□ -0.42
SDCCAG3-208	ENST00000466579	ATF5	Q9Y2D1	282 aa	Predicted RBP	12.45	□□□□□ -0.42
SDCCAG3-208	ENST00000466579	CHL1	O00533	1208 aa		12.44	□□□□□ -0.42
SDCCAG3-208	ENST00000466579	EIF4A1	P60842	406 aa	Known RBP	12.44	□□□□□ -0.42
SDCCAG3-208	ENST00000466579	CCDC27	Q2M243	656 aa		12.44	□□□□□ -0.42
SDCCAG3-208	ENST00000466579	TRAPPC3L	Q5T215	181 aa		12.44	□□□□□ -0.42
SDCCAG3-208	ENST00000466579	ARHGEF1	Q92888	912 aa	Known RBP	12.44	□□□□□ -0.42
SDCCAG3-208	ENST00000466579	MIS18A	Q9NYP9	233 aa		12.44	□□□□□ -0.42
SDCCAG3-208	ENST00000466579	PHF14	O94880	888 aa		12.43	□□□□□ -0.42
SDCCAG3-208	ENST00000466579	ZNF853	P0CG23	659 aa		12.43	□□□□□ -0.42
SDCCAG3-208	ENST00000466579	EIF5	P55010	431 aa	Known RBP	12.43	□□□□□ -0.42
SDCCAG3-208	ENST00000466579	NEUROD2	Q15784	382 aa		12.43	□□□□□ -0.42
SDCCAG3-208	ENST00000466579	ZBTB1	Q9Y2K1	713 aa		12.43	□□□□□ -0.42
SDCCAG3-208	ENST00000466579	CCER2	I3L3R5	266 aa		12.42	□□□□□ -0.42
SDCCAG3-208	ENST00000466579	GIGYF1	O75420	1035 aa	Predicted RBP	12.42	□□□□□ -0.42
SDCCAG3-208	ENST00000466579	USP16	Q9Y5T5	823 aa		12.42	□□□□□ -0.42
SDCCAG3-208	ENST00000466579	USP42	Q9H9J4	1324 aa	Known RBP	12.41	□□□□□ -0.42
SDCCAG3-208	ENST00000466579	PRAMEF22	A3QJZ6	481 aa		12.41	□□□□□ -0.42
SDCCAG3-208	ENST00000466579	GYS1	P13807	737 aa		12.41	□□□□□ -0.42
SDCCAG3-208	ENST00000466579	POLD1	P28340	1107 aa		12.41	□□□□□ -0.42
SDCCAG3-208	ENST00000466579	IL6ST	P40189	918 aa	Predicted RBP	12.41	□□□□□ -0.42
SDCCAG3-208	ENST00000466579	CFAP44	Q96MT7	982 aa		12.41	□□□□□ -0.42
SDCCAG3-208	ENST00000466579	ARX	Q96QS3	562 aa		12.41	□□□□□ -0.42
SDCCAG3-208	ENST00000466579	TSPYL4	Q9UJ04	414 aa		12.41	□□□□□ -0.42
SDCCAG3-208	ENST00000466579	COL15A1	P39059	1388 aa		12.41	□□□□□ -0.42
SDCCAG3-208	ENST00000466579	RFC4	P35249	363 aa		12.4	□□□□□ -0.42
SDCCAG3-208	ENST00000466579	CALD1	Q05682	793 aa	Known RBP	12.4	□□□□□ -0.42
SDCCAG3-208	ENST00000466579	NLGN1	Q8N2Q7	840 aa		12.4	□□□□□ -0.42
SDCCAG3-208	ENST00000466579	SCN7A	Q01118	1682 aa		12.39	□□□□□ -0.43
SDCCAG3-208	ENST00000466579		A0A087WZG4	1122 aa		12.39	□□□□□ -0.43
SDCCAG3-208	ENST00000466579	A1BG	P04217	495 aa		12.39	□□□□□ -0.43
SDCCAG3-208	ENST00000466579	MSL1	Q68DK7	614 aa		12.39	□□□□□ -0.43
SDCCAG3-208	ENST00000466579	NGEF	Q8N5V2	710 aa		12.39	□□□□□ -0.43
SDCCAG3-208	ENST00000466579	IFT57	Q9NWB7	429 aa		12.39	□□□□□ -0.43
SDCCAG3-208	ENST00000466579	PPP1R1B	Q9UD71	204 aa	Predicted RBP	12.39	□□□□□ -0.43
SDCCAG3-208	ENST00000466579	NARF	Q9UHQ1	456 aa		12.39	□□□□□ -0.43
SDCCAG3-208	ENST00000466579	ERBB4	Q15303	1308 aa		12.38	□□□□□ -0.43
SDCCAG3-208	ENST00000466579	BCOR	Q6W2J9	1755 aa		12.38	□□□□□ -0.43
SDCCAG3-208	ENST00000466579	NBPF26	B4DH59	902 aa		12.38	□□□□□ -0.43
SDCCAG3-208	ENST00000466579	RGL2	O15211	777 aa		12.38	□□□□□ -0.43
SDCCAG3-208	ENST00000466579	CANX	P27824	592 aa	Known RBP	12.38	□□□□□ -0.43
SDCCAG3-208	ENST00000466579	DIEXF	Q68CQ4	756 aa	Known RBP	12.38	□□□□□ -0.43
SDCCAG3-208	ENST00000466579	NBPF10	Q6P3W6	841 aa	Known RBP	12.38	□□□□□ -0.43
SDCCAG3-208	ENST00000466579	WWC1	Q8IX03	1113 aa		12.38	□□□□□ -0.43
SDCCAG3-208	ENST00000466579	NBPF15	Q8N660	670 aa		12.38	□□□□□ -0.43
SDCCAG3-208	ENST00000466579	SRP68	Q9UHB9	627 aa	Known RBP	12.38	□□□□□ -0.43
SDCCAG3-208	ENST00000466579	KIF13B	Q9NQT8	1826 aa		12.38	□□□□□ -0.43
SDCCAG3-208	ENST00000466579	IL16	Q14005	1332 aa		12.37	□□□□□ -0.43
SDCCAG3-208	ENST00000466579	HOXB7	P09629	217 aa		12.37	□□□□□ -0.43
SDCCAG3-208	ENST00000466579	GNAI1	P63096	354 aa		12.37	□□□□□ -0.43
SDCCAG3-208	ENST00000466579	FHDC1	Q9C0D6	1143 aa	Predicted RBP	12.37	□□□□□ -0.43
SDCCAG3-208	ENST00000466579	BCL2L12	Q9HB09	334 aa		12.37	□□□□□ -0.43
SDCCAG3-208	ENST00000466579	MBIP	Q9NS73	344 aa		12.37	□□□□□ -0.43
SDCCAG3-208	ENST00000466579	ZPR1	O75312	459 aa		12.36	□□□□□ -0.43
SDCCAG3-208	ENST00000466579	MMP10	P09238	476 aa		12.36	□□□□□ -0.43
SDCCAG3-208	ENST00000466579	TM4SF1	P30408	202 aa		12.36	□□□□□ -0.43
SDCCAG3-208	ENST00000466579	FKBP8	Q14318	412 aa		12.36	□□□□□ -0.43
SDCCAG3-208	ENST00000466579	USPL1	Q5W0Q7	1092 aa		12.36	□□□□□ -0.43
SDCCAG3-208	ENST00000466579	FAM9B	Q8IZU0	186 aa		12.36	□□□□□ -0.43
SDCCAG3-208	ENST00000466579	SYT17	Q9BSW7	474 aa		12.36	□□□□□ -0.43
SDCCAG3-208	ENST00000466579	NRXN2	Q9P2S2	1712 aa		12.36	□□□□□ -0.43
SDCCAG3-208	ENST00000466579	CAMTA2	O94983	1202 aa		12.35	□□□□□ -0.43
SDCCAG3-208	ENST00000466579	LRP10	Q7Z4F1	713 aa		12.35	□□□□□ -0.43
SDCCAG3-208	ENST00000466579	WDR63	Q8IWG1	891 aa		12.35	□□□□□ -0.43
SDCCAG3-208	ENST00000466579	CD2AP	Q9Y5K6	639 aa		12.35	□□□□□ -0.43
SDCCAG3-208	ENST00000466579	DDR1	Q08345	913 aa		12.34	□□□□□ -0.43
SDCCAG3-208	ENST00000466579	PDIA6	Q15084	440 aa		12.34	□□□□□ -0.43
SDCCAG3-208	ENST00000466579	CNKSR2	Q8WXI2	1034 aa		12.34	□□□□□ -0.43
SDCCAG3-208	ENST00000466579	ZNF521	Q96K83	1311 aa		12.34	□□□□□ -0.43
SDCCAG3-208	ENST00000466579	KIAA1551	Q9HCM1	1747 aa		12.34	□□□□□ -0.43
SDCCAG3-208	ENST00000466579	AFDN	P55196	1824 aa	Known RBP	12.33	□□□□□ -0.44
SDCCAG3-208	ENST00000466579	POLRMT	O00411	1230 aa	Known RBP	12.33	□□□□□ -0.44
SDCCAG3-208	ENST00000466579	KRT24	Q2M2I5	525 aa		12.33	□□□□□ -0.44
SDCCAG3-208	ENST00000466579	CLEC4G	Q6UXB4	293 aa		12.33	□□□□□ -0.44
SDCCAG3-208	ENST00000466579	TBC1D2B	Q9UPU7	963 aa		12.33	□□□□□ -0.44
SDCCAG3-208	ENST00000466579	LAS1L	Q9Y4W2	734 aa	Known RBP	12.33	□□□□□ -0.44
SDCCAG3-208	ENST00000466579	C10orf71	Q711Q0	1435 aa		12.33	□□□□□ -0.44
SDCCAG3-208	ENST00000466579	PIP4K2A	P48426	406 aa	Predicted RBP	12.32	□□□□□ -0.44
SDCCAG3-208	ENST00000466579	NFIX	Q14938	502 aa		12.32	□□□□□ -0.44
SDCCAG3-208	ENST00000466579	DZIP3	Q86Y13	1208 aa	Known RBP	12.32	□□□□□ -0.44
SDCCAG3-208	ENST00000466579	MIER1	Q8N108	512 aa		12.32	□□□□□ -0.44
SDCCAG3-208	ENST00000466579	ERVV-1	B6SEH8	477 aa		12.31	□□□□□ -0.44
SDCCAG3-208	ENST00000466579	DUSP27	Q5VZP5	1158 aa		12.31	□□□□□ -0.44
SDCCAG3-208	ENST00000466579	DDX21	Q9NR30	783 aa	Known RBP eCLIP	12.31	□□□□□ -0.44
SDCCAG3-208	ENST00000466579	RNF216	Q9NWF9	866 aa	Predicted RBP	12.31	□□□□□ -0.44
SDCCAG3-208	ENST00000466579	PARP3	Q9Y6F1	533 aa		12.31	□□□□□ -0.44
SDCCAG3-208	ENST00000466579	NUP98	P52948	1817 aa		12.31	□□□□□ -0.44
SDCCAG3-208	ENST00000466579	C1QBP	Q07021	282 aa	Known RBP	12.3	□□□□□ -0.44
SDCCAG3-208	ENST00000466579	NPM2	Q86SE8	214 aa	Known RBP	12.3	□□□□□ -0.44
SDCCAG3-208	ENST00000466579	C8orf58	Q8NAV2	365 aa		12.3	□□□□□ -0.44
SDCCAG3-208	ENST00000466579	NLGN2	Q8NFZ4	835 aa		12.3	□□□□□ -0.44
SDCCAG3-208	ENST00000466579	EIF2S2	P20042	333 aa	Known RBP	12.29	□□□□□ -0.44

Retrieved 100 of 20,778 RNA–protein pairs in 174.6 ms