RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 ZBTB1Q9Y2K1 713 aa25.74■■□□□ 1.71
COL9A3-206ENST00000466532 FCHSD2O94868 740 aa25.73■■□□□ 1.71
COL9A3-206ENST00000466532 TEFQ10587 303 aa25.73■■□□□ 1.71
COL9A3-206ENST00000466532 NRXN2Q9P2S2 1712 aa25.73■■□□□ 1.71
COL9A3-206ENST00000466532 IL17REQ8NFR9 667 aa25.72■■□□□ 1.71
COL9A3-206ENST00000466532 POLRMTO00411 1230 aaKnown RBP25.71■■□□□ 1.71
COL9A3-206ENST00000466532 KCNA3P22001 575 aa25.71■■□□□ 1.71
COL9A3-206ENST00000466532 TM4SF1P30408 202 aa25.71■■□□□ 1.71
COL9A3-206ENST00000466532 NARFQ9UHQ1 456 aa25.71■■□□□ 1.71
COL9A3-206ENST00000466532 DLEC1Q9Y238 1755 aa25.7■■□□□ 1.7
COL9A3-206ENST00000466532 ARHGAP27Q6ZUM4 889 aa25.7■■□□□ 1.7
COL9A3-206ENST00000466532 PRKAR2BP31323 418 aa25.69■■□□□ 1.7
COL9A3-206ENST00000466532 PIM2Q9P1W9 311 aa25.69■■□□□ 1.7
COL9A3-206ENST00000466532 SBF1O95248 1867 aa25.68■■□□□ 1.7
COL9A3-206ENST00000466532 CANXP27824 592 aaKnown RBP25.68■■□□□ 1.7
COL9A3-206ENST00000466532 ZNF790Q6PG37 636 aa25.68■■□□□ 1.7
COL9A3-206ENST00000466532 RSPH6AQ9H0K4 717 aa25.68■■□□□ 1.7
COL9A3-206ENST00000466532 SCN7AQ01118 1682 aa25.68■■□□□ 1.7
COL9A3-206ENST00000466532 STARD3NLO95772 234 aa25.67■■□□□ 1.7
COL9A3-206ENST00000466532 PPP2R1AP30153 589 aa25.67■■□□□ 1.7
COL9A3-206ENST00000466532 ZNF496Q96IT1 587 aaPredicted RBP25.67■■□□□ 1.7
COL9A3-206ENST00000466532 PHACTR3Q96KR7 559 aa25.67■■□□□ 1.7
COL9A3-206ENST00000466532 NUDCQ9Y266 331 aa25.67■■□□□ 1.7
COL9A3-206ENST00000466532 HEG1Q9ULI3 1381 aa25.67■■□□□ 1.7
COL9A3-206ENST00000466532 NFIXQ14938 502 aa25.66■■□□□ 1.7
COL9A3-206ENST00000466532 CEMIPQ8WUJ3 1361 aa25.66■■□□□ 1.7
COL9A3-206ENST00000466532 CHRNA5P30532 468 aa25.65■■□□□ 1.7
COL9A3-206ENST00000466532 DALRD3Q5D0E6 543 aaKnown RBP25.65■■□□□ 1.7
COL9A3-206ENST00000466532 BCL2L12Q9HB09 334 aa25.65■■□□□ 1.7
COL9A3-206ENST00000466532 DLG5Q8TDM6 1919 aa25.64■■□□□ 1.69
COL9A3-206ENST00000466532 U2AF1L5P0DN76 240 aaPredicted RBP25.63■■□□□ 1.69
COL9A3-206ENST00000466532 U2AF1Q01081 240 aaKnown RBP eCLIP25.63■■□□□ 1.69
COL9A3-206ENST00000466532 TEX13AQ9BXU3 409 aaPredicted RBP25.63■■□□□ 1.69
COL9A3-206ENST00000466532 EIF5P55010 431 aaKnown RBP25.62■■□□□ 1.69
COL9A3-206ENST00000466532 CCDC88AQ3V6T2 1871 aa25.62■■□□□ 1.69
COL9A3-206ENST00000466532 ANKRD31Q8N7Z5 1873 aa25.62■■□□□ 1.69
COL9A3-206ENST00000466532 BCORQ6W2J9 1755 aa25.61■■□□□ 1.69
COL9A3-206ENST00000466532 A0A087WZG4 1122 aa25.61■■□□□ 1.69
COL9A3-206ENST00000466532 FMNL2Q96PY5 1086 aa25.61■■□□□ 1.69
COL9A3-206ENST00000466532 BTBD11A6QL63 1104 aa25.6■■□□□ 1.69
COL9A3-206ENST00000466532 SERPINB2P05120 415 aa25.6■■□□□ 1.69
COL9A3-206ENST00000466532 KIF3CO14782 793 aa25.59■■□□□ 1.69
COL9A3-206ENST00000466532 ZNF330Q9Y3S2 320 aaPredicted RBP25.59■■□□□ 1.69
COL9A3-206ENST00000466532 KCNQ3O43525 872 aa25.58■■□□□ 1.69
COL9A3-206ENST00000466532 BICDL1Q6ZP65 573 aa25.58■■□□□ 1.69
COL9A3-206ENST00000466532 C9orf131Q5VYM1 1079 aa25.57■■□□□ 1.68
COL9A3-206ENST00000466532 RTF1Q92541 710 aaKnown RBP25.57■■□□□ 1.68
COL9A3-206ENST00000466532 CACNA1SQ13698 1873 aa25.56■■□□□ 1.68
COL9A3-206ENST00000466532 IL6STP40189 918 aaPredicted RBP25.56■■□□□ 1.68
COL9A3-206ENST00000466532 CARMIL3Q8ND23 1372 aa25.56■■□□□ 1.68
COL9A3-206ENST00000466532 MCM10Q7L590 875 aa25.55■■□□□ 1.68
COL9A3-206ENST00000466532 TBC1D2BQ9UPU7 963 aa25.55■■□□□ 1.68
COL9A3-206ENST00000466532 COL11A2P13942 1736 aaPredicted RBP25.54■■□□□ 1.68
COL9A3-206ENST00000466532 A1BGP04217 495 aa25.54■■□□□ 1.68
COL9A3-206ENST00000466532 TBC1D9BQ66K14 1250 aa25.54■■□□□ 1.68
COL9A3-206ENST00000466532 NPM2Q86SE8 214 aaKnown RBP25.54■■□□□ 1.68
COL9A3-206ENST00000466532 CEP350Q5VT06 3117 aa25.53■■□□□ 1.68
COL9A3-206ENST00000466532 HSPA6P17066 643 aa25.53■■□□□ 1.68
COL9A3-206ENST00000466532 LAMB4A4D0S4 1761 aa25.52■■□□□ 1.68
COL9A3-206ENST00000466532 C2CD5Q86YS7 1000 aa25.52■■□□□ 1.68
COL9A3-206ENST00000466532 RNF181Q9P0P0 153 aa25.52■■□□□ 1.68
COL9A3-206ENST00000466532 TNRC6CQ9HCJ0 1690 aaKnown RBP25.52■■□□□ 1.68
COL9A3-206ENST00000466532 DCTN1Q14203 1278 aa25.51■■□□□ 1.67
COL9A3-206ENST00000466532 NMRK2Q9NPI5 230 aa25.51■■□□□ 1.67
COL9A3-206ENST00000466532 TIAM2Q8IVF5 1701 aa25.51■■□□□ 1.67
COL9A3-206ENST00000466532 USP16Q9Y5T5 823 aa25.5■■□□□ 1.67
COL9A3-206ENST00000466532 KDM3BQ7LBC6 1761 aa25.49■■□□□ 1.67
COL9A3-206ENST00000466532 PRAMEF22A3QJZ6 481 aa25.49■■□□□ 1.67
COL9A3-206ENST00000466532 H0YIN7 160 aa25.49■■□□□ 1.67
COL9A3-206ENST00000466532 HTATSF1O43719 755 aaKnown RBP25.49■■□□□ 1.67
COL9A3-206ENST00000466532 TTLL6Q8N841 843 aa25.49■■□□□ 1.67
COL9A3-206ENST00000466532 CAMTA2O94983 1202 aa25.48■■□□□ 1.67
COL9A3-206ENST00000466532 TOMM70O94826 608 aa25.47■■□□□ 1.67
COL9A3-206ENST00000466532 SNRPA1P09661 255 aaKnown RBP25.47■■□□□ 1.67
COL9A3-206ENST00000466532 PIP4K2AP48426 406 aaPredicted RBP25.47■■□□□ 1.67
COL9A3-206ENST00000466532 RASSF7Q02833 373 aa25.47■■□□□ 1.67
COL9A3-206ENST00000466532 PRR5LQ6MZQ0 368 aa25.47■■□□□ 1.67
COL9A3-206ENST00000466532 DZIP3Q86Y13 1208 aaKnown RBP25.47■■□□□ 1.67
COL9A3-206ENST00000466532 DICER1Q9UPY3 1922 aaKnown RBP25.47■■□□□ 1.67
COL9A3-206ENST00000466532 FER1L6Q2WGJ9 1857 aa25.47■■□□□ 1.67
COL9A3-206ENST00000466532 ARFGEF2Q9Y6D5 1785 aa25.46■■□□□ 1.67
COL9A3-206ENST00000466532 NEFMP07197 916 aa25.46■■□□□ 1.67
COL9A3-206ENST00000466532 KDM2BQ8NHM5 1336 aa25.45■■□□□ 1.66
COL9A3-206ENST00000466532 CCDC24Q8N4L8 307 aa25.45■■□□□ 1.66
COL9A3-206ENST00000466532 SETDB2Q96T68 719 aa25.45■■□□□ 1.66
COL9A3-206ENST00000466532 BRIP1Q9BX63 1249 aa25.45■■□□□ 1.66
COL9A3-206ENST00000466532 PDE6BP35913 854 aa25.44■■□□□ 1.66
COL9A3-206ENST00000466532 NPHP1O15259 732 aa25.43■■□□□ 1.66
COL9A3-206ENST00000466532 TAF7Q15545 349 aaPredicted RBP25.43■■□□□ 1.66
COL9A3-206ENST00000466532 CNBD1Q8NA66 436 aa25.43■■□□□ 1.66
COL9A3-206ENST00000466532 ZNF622Q969S3 477 aaKnown RBP eCLIP25.43■■□□□ 1.66
COL9A3-206ENST00000466532 PDZRN3Q9UPQ7 1066 aa25.43■■□□□ 1.66
COL9A3-206ENST00000466532 SLX4Q8IY92 1834 aa25.42■■□□□ 1.66
COL9A3-206ENST00000466532 LMNB1P20700 586 aa25.41■■□□□ 1.66
COL9A3-206ENST00000466532 C16orf71Q8IYS4 520 aaPredicted RBP25.41■■□□□ 1.66
COL9A3-206ENST00000466532 MIS18AQ9NYP9 233 aa25.41■■□□□ 1.66
COL9A3-206ENST00000466532 NUP98P52948 1817 aa25.4■■□□□ 1.66
COL9A3-206ENST00000466532 ST5P78524 1137 aa25.4■■□□□ 1.66
COL9A3-206ENST00000466532 WDR90Q96KV7 1748 aa25.4■■□□□ 1.66
COL9A3-206ENST00000466532 ZC3H4Q9UPT8 1303 aaKnown RBP25.39■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms