RNA–Protein interactions for RNA: ENST00000463372.5

C9orf3-211, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 919 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-211ENST00000463372 NKX1-1Q15270 411 aaPredicted RBP19.16■□□□□ 0.66
C9orf3-211ENST00000463372 CNTROBQ8N137 903 aa19.15■□□□□ 0.66
C9orf3-211ENST00000463372 ATG3Q9NT62 314 aa19.15■□□□□ 0.66
C9orf3-211ENST00000463372 SRP68Q9UHB9 627 aaKnown RBP19.15■□□□□ 0.66
C9orf3-211ENST00000463372 CYP4F22Q6NT55 531 aa19.14■□□□□ 0.65
C9orf3-211ENST00000463372 TMC1Q8TDI8 760 aa19.14■□□□□ 0.65
C9orf3-211ENST00000463372 RBM42Q9BTD8 480 aaKnown RBP19.14■□□□□ 0.65
C9orf3-211ENST00000463372 RTL1A6NKG5 1358 aa19.14■□□□□ 0.65
C9orf3-211ENST00000463372 COG3Q96JB2 828 aa19.13■□□□□ 0.65
C9orf3-211ENST00000463372 L3MBTL3Q96JM7 780 aaPredicted RBP19.13■□□□□ 0.65
C9orf3-211ENST00000463372 USP42Q9H9J4 1324 aaKnown RBP19.13■□□□□ 0.65
C9orf3-211ENST00000463372 KDRP35968 1356 aa19.13■□□□□ 0.65
C9orf3-211ENST00000463372 ADAMTSL1Q8N6G6 1762 aa19.12■□□□□ 0.65
C9orf3-211ENST00000463372 MAP2K2P36507 400 aa19.12■□□□□ 0.65
C9orf3-211ENST00000463372 MAP1SQ66K74 1059 aaPredicted RBP19.12■□□□□ 0.65
C9orf3-211ENST00000463372 TRPM7Q96QT4 1865 aa19.11■□□□□ 0.65
C9orf3-211ENST00000463372 H0YIN7 160 aa19.11■□□□□ 0.65
C9orf3-211ENST00000463372 FBLN1P23142 703 aa19.11■□□□□ 0.65
C9orf3-211ENST00000463372 C2CD5Q86YS7 1000 aa19.11■□□□□ 0.65
C9orf3-211ENST00000463372 NBPF15Q8N660 670 aa19.11■□□□□ 0.65
C9orf3-211ENST00000463372 TM4SF1P30408 202 aa19.1■□□□□ 0.65
C9orf3-211ENST00000463372 HABP4Q5JVS0 413 aaKnown RBP19.1■□□□□ 0.65
C9orf3-211ENST00000463372 PNMA8AQ86V59 439 aaPredicted RBP19.1■□□□□ 0.65
C9orf3-211ENST00000463372 HACL1Q9UJ83 578 aa19.1■□□□□ 0.65
C9orf3-211ENST00000463372 SPG7Q9UQ90 795 aa19.1■□□□□ 0.65
C9orf3-211ENST00000463372 SLC4A9Q96Q91 983 aa19.09■□□□□ 0.65
C9orf3-211ENST00000463372 TAOK3Q9H2K8 898 aa19.09■□□□□ 0.65
C9orf3-211ENST00000463372 DDX21Q9NR30 783 aaKnown RBP eCLIP19.09■□□□□ 0.65
C9orf3-211ENST00000463372 TERF2IPQ9NYB0 399 aa19.09■□□□□ 0.65
C9orf3-211ENST00000463372 C21orf2O43822 256 aa19.08■□□□□ 0.64
C9orf3-211ENST00000463372 AOC2O75106 756 aa19.08■□□□□ 0.64
C9orf3-211ENST00000463372 EPHX2P34913 555 aa19.07■□□□□ 0.64
C9orf3-211ENST00000463372 NRXN2Q9P2S2 1712 aa19.07■□□□□ 0.64
C9orf3-211ENST00000463372 LTBP3Q9NS15 1303 aa19.06■□□□□ 0.64
C9orf3-211ENST00000463372 ZPR1O75312 459 aa19.06■□□□□ 0.64
C9orf3-211ENST00000463372 DLL1O00548 723 aa19.05■□□□□ 0.64
C9orf3-211ENST00000463372 RRS1Q15050 365 aaKnown RBP19.05■□□□□ 0.64
C9orf3-211ENST00000463372 SLC12A5Q9H2X9 1139 aa19.05■□□□□ 0.64
C9orf3-211ENST00000463372 A0A1W2PP64 1363 aa19.05■□□□□ 0.64
C9orf3-211ENST00000463372 ZNF622Q969S3 477 aaKnown RBP eCLIP19.04■□□□□ 0.64
C9orf3-211ENST00000463372 CACNA1SQ13698 1873 aa19.03■□□□□ 0.64
C9orf3-211ENST00000463372 CRKLP46109 303 aaKnown RBP19.03■□□□□ 0.64
C9orf3-211ENST00000463372 BRPF1P55201 1214 aaPredicted RBP19.03■□□□□ 0.64
C9orf3-211ENST00000463372 SERPINB2P05120 415 aa19.01■□□□□ 0.63
C9orf3-211ENST00000463372 USPL1Q5W0Q7 1092 aa19.01■□□□□ 0.63
C9orf3-211ENST00000463372 IFNL2Q8IZJ0 200 aa19.01■□□□□ 0.63
C9orf3-211ENST00000463372 TLL2Q9Y6L7 1015 aa19.01■□□□□ 0.63
C9orf3-211ENST00000463372 NFIXQ14938 502 aa19■□□□□ 0.63
C9orf3-211ENST00000463372 HSP90AB2PQ58FF8 381 aa19■□□□□ 0.63
C9orf3-211ENST00000463372 INSRP06213 1382 aa19■□□□□ 0.63
C9orf3-211ENST00000463372 RAB3GAP2Q9H2M9 1393 aa19■□□□□ 0.63
C9orf3-211ENST00000463372 ADAMTS7Q9UKP4 1686 aa18.98■□□□□ 0.63
C9orf3-211ENST00000463372 PHKG2P15735 406 aa18.98■□□□□ 0.63
C9orf3-211ENST00000463372 RNF123Q5XPI4 1314 aa18.98■□□□□ 0.63
C9orf3-211ENST00000463372 CIAPIN1Q6FI81 312 aa18.97■□□□□ 0.63
C9orf3-211ENST00000463372 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.97■□□□□ 0.63
C9orf3-211ENST00000463372 PDZRN3Q9UPQ7 1066 aa18.97■□□□□ 0.63
C9orf3-211ENST00000463372 ANKRD31Q8N7Z5 1873 aa18.97■□□□□ 0.63
C9orf3-211ENST00000463372 CUL9Q8IWT3 2517 aa18.96■□□□□ 0.63
C9orf3-211ENST00000463372 SLX4Q8IY92 1834 aa18.96■□□□□ 0.63
C9orf3-211ENST00000463372 FMR1Q06787 632 aaKnown RBP eCLIP18.96■□□□□ 0.63
C9orf3-211ENST00000463372 SOGA3Q5TF21 947 aa18.96■□□□□ 0.63
C9orf3-211ENST00000463372 ZNF541Q9H0D2 1346 aa18.96■□□□□ 0.63
C9orf3-211ENST00000463372 CARMIL3Q8ND23 1372 aa18.95■□□□□ 0.62
C9orf3-211ENST00000463372 FXR1P51114 621 aaKnown RBP eCLIP18.95■□□□□ 0.62
C9orf3-211ENST00000463372 CST9Q5W186 159 aa18.95■□□□□ 0.62
C9orf3-211ENST00000463372 FLT4P35916 1363 aa18.94■□□□□ 0.62
C9orf3-211ENST00000463372 ERVV-2B6SEH9 535 aa18.94■□□□□ 0.62
C9orf3-211ENST00000463372 PTCD1O75127 700 aaKnown RBP18.94■□□□□ 0.62
C9orf3-211ENST00000463372 PDE6BP35913 854 aa18.94■□□□□ 0.62
C9orf3-211ENST00000463372 COL11A2P13942 1736 aaPredicted RBP18.94■□□□□ 0.62
C9orf3-211ENST00000463372 BICDL1Q6ZP65 573 aa18.92■□□□□ 0.62
C9orf3-211ENST00000463372 SAPCD2Q86UD0 394 aa18.92■□□□□ 0.62
C9orf3-211ENST00000463372 ROCK2O75116 1388 aaKnown RBP18.92■□□□□ 0.62
C9orf3-211ENST00000463372 TJP1Q07157 1748 aa18.91■□□□□ 0.62
C9orf3-211ENST00000463372 ARFGEF2Q9Y6D5 1785 aa18.91■□□□□ 0.62
C9orf3-211ENST00000463372 HHIPL1Q96JK4 782 aa18.91■□□□□ 0.62
C9orf3-211ENST00000463372 NARFQ9UHQ1 456 aa18.91■□□□□ 0.62
C9orf3-211ENST00000463372 AKAP11Q9UKA4 1901 aa18.91■□□□□ 0.62
C9orf3-211ENST00000463372 TRAF5O00463 557 aa18.9■□□□□ 0.62
C9orf3-211ENST00000463372 INTS5Q6P9B9 1019 aaKnown RBP18.9■□□□□ 0.62
C9orf3-211ENST00000463372 CNKSR1Q969H4 720 aa18.9■□□□□ 0.62
C9orf3-211ENST00000463372 LMOD1P29536 600 aaPredicted RBP18.89■□□□□ 0.61
C9orf3-211ENST00000463372 GPC2Q8N158 579 aa18.89■□□□□ 0.61
C9orf3-211ENST00000463372 BRIP1Q9BX63 1249 aa18.89■□□□□ 0.61
C9orf3-211ENST00000463372 KIF24Q5T7B8 1368 aa18.89■□□□□ 0.61
C9orf3-211ENST00000463372 NCAPD2Q15021 1401 aa18.89■□□□□ 0.61
C9orf3-211ENST00000463372 A0A0C4DFX4 3053 aa18.89■□□□□ 0.61
C9orf3-211ENST00000463372 CABP4P57796 275 aa18.88■□□□□ 0.61
C9orf3-211ENST00000463372 NOGQ13253 232 aa18.88■□□□□ 0.61
C9orf3-211ENST00000463372 PRPF40BQ6NWY9 871 aaKnown RBP18.88■□□□□ 0.61
C9orf3-211ENST00000463372 SLC17A8Q8NDX2 589 aa18.88■□□□□ 0.61
C9orf3-211ENST00000463372 TONSLQ96HA7 1378 aa18.88■□□□□ 0.61
C9orf3-211ENST00000463372 CTU1Q7Z7A3 348 aaKnown RBP18.87■□□□□ 0.61
C9orf3-211ENST00000463372 SOS1Q07889 1333 aaPredicted RBP18.86■□□□□ 0.61
C9orf3-211ENST00000463372 CELF2O95319 508 aaKnown RBP18.86■□□□□ 0.61
C9orf3-211ENST00000463372 HSP90AB1P08238 724 aaKnown RBP18.86■□□□□ 0.61
C9orf3-211ENST00000463372 HPS5Q9UPZ3 1129 aa18.86■□□□□ 0.61
C9orf3-211ENST00000463372 CCDC93Q567U6 631 aa18.85■□□□□ 0.61
C9orf3-211ENST00000463372 AKAP4Q5JQC9 854 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 84.6 ms