RNA–Protein interactions for RNA: ENST00000462787.5

SMC4-204, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2 BASIC

Gene SMC4, Length 5,033 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-204ENST00000462787 GPATCH11Q8N954 259 aa18.39■□□□□ 0.53
SMC4-204ENST00000462787 ZGPATQ8N5A5 531 aaKnown RBP18.39■□□□□ 0.53
SMC4-204ENST00000462787 TRIM34Q9BYJ4 488 aa18.39■□□□□ 0.53
SMC4-204ENST00000462787 PTGS1P23219 599 aa18.39■□□□□ 0.53
SMC4-204ENST00000462787 TYRO3Q06418 890 aa18.39■□□□□ 0.53
SMC4-204ENST00000462787 IQGAP2Q13576 1575 aa18.38■□□□□ 0.53
SMC4-204ENST00000462787 GNG11P61952 73 aa18.38■□□□□ 0.53
SMC4-204ENST00000462787 U3KPZ7 1027 aaPredicted RBP18.38■□□□□ 0.53
SMC4-204ENST00000462787 IGSF3O75054 1194 aa18.38■□□□□ 0.53
SMC4-204ENST00000462787 IMMTQ16891 758 aaKnown RBP18.38■□□□□ 0.53
SMC4-204ENST00000462787 CEP131Q9UPN4 1083 aa18.38■□□□□ 0.53
SMC4-204ENST00000462787 PRAG1Q86YV5 1406 aa18.38■□□□□ 0.53
SMC4-204ENST00000462787 PDE1AP54750 535 aa18.38■□□□□ 0.53
SMC4-204ENST00000462787 USP26Q9BXU7 913 aa18.38■□□□□ 0.53
SMC4-204ENST00000462787 ZRSR2Q15696 482 aaKnown RBP18.37■□□□□ 0.53
SMC4-204ENST00000462787 TNNQ9UQP3 1299 aa18.37■□□□□ 0.53
SMC4-204ENST00000462787 RTEL1-TNFRSF6BF6WH68 1400 aa18.37■□□□□ 0.53
SMC4-204ENST00000462787 ERO1AQ96HE7 468 aa18.37■□□□□ 0.53
SMC4-204ENST00000462787 C8orf76Q96K31 380 aa18.37■□□□□ 0.53
SMC4-204ENST00000462787 GTF2E1P29083 439 aaPredicted RBP18.37■□□□□ 0.53
SMC4-204ENST00000462787 TTC39AQ5SRH9 613 aa18.37■□□□□ 0.53
SMC4-204ENST00000462787 RAPGEF4Q8WZA2 1011 aa18.37■□□□□ 0.53
SMC4-204ENST00000462787 EVI5LQ96CN4 794 aa18.37■□□□□ 0.53
SMC4-204ENST00000462787 DNAAF4Q8WXU2 420 aa18.37■□□□□ 0.53
SMC4-204ENST00000462787 BLMP54132 1417 aaPredicted RBP18.36■□□□□ 0.53
SMC4-204ENST00000462787 CCDC69A6NI79 296 aa18.36■□□□□ 0.53
SMC4-204ENST00000462787 LARP6Q9BRS8 491 aaKnown RBP18.36■□□□□ 0.53
SMC4-204ENST00000462787 DNAI1Q9UI46 699 aa18.36■□□□□ 0.53
SMC4-204ENST00000462787 KIAA0586Q9BVV6 1533 aa18.36■□□□□ 0.53
SMC4-204ENST00000462787 RIOK3O14730 519 aaKnown RBP18.36■□□□□ 0.53
SMC4-204ENST00000462787 HSP90AB2PQ58FF8 381 aa18.36■□□□□ 0.53
SMC4-204ENST00000462787 SLC52A1Q9NWF4 448 aa18.36■□□□□ 0.53
SMC4-204ENST00000462787 DACT1Q9NYF0 836 aa18.36■□□□□ 0.53
SMC4-204ENST00000462787 TCOF1Q13428 1488 aaKnown RBP18.36■□□□□ 0.53
SMC4-204ENST00000462787 ZSCAN25Q6NSZ9 544 aa18.35■□□□□ 0.53
SMC4-204ENST00000462787 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.35■□□□□ 0.53
SMC4-204ENST00000462787 DCTPP1Q9H773 170 aa18.35■□□□□ 0.53
SMC4-204ENST00000462787 SPG7Q9UQ90 795 aa18.35■□□□□ 0.53
SMC4-204ENST00000462787 CC2D2AQ9P2K1 1620 aa18.35■□□□□ 0.53
SMC4-204ENST00000462787 V9GYY5 206 aaPredicted RBP18.35■□□□□ 0.53
SMC4-204ENST00000462787 MBIPQ9NS73 344 aa18.35■□□□□ 0.53
SMC4-204ENST00000462787 ARHGEF12Q9NZN5 1544 aa18.35■□□□□ 0.53
SMC4-204ENST00000462787 TUBB4BP68371 445 aa18.35■□□□□ 0.53
SMC4-204ENST00000462787 CT47A1Q5JQC4 288 aaPredicted RBP18.35■□□□□ 0.53
SMC4-204ENST00000462787 DDX54Q8TDD1 881 aaKnown RBP18.35■□□□□ 0.53
SMC4-204ENST00000462787 RASSF4Q9H2L5 321 aa18.35■□□□□ 0.53
SMC4-204ENST00000462787 HMG20BQ9P0W2 317 aa18.35■□□□□ 0.53
SMC4-204ENST00000462787 MAGI1Q96QZ7 1491 aaPredicted RBP18.35■□□□□ 0.53
SMC4-204ENST00000462787 RRS1Q15050 365 aaKnown RBP18.34■□□□□ 0.53
SMC4-204ENST00000462787 EIF5P55010 431 aaKnown RBP18.34■□□□□ 0.53
SMC4-204ENST00000462787 CCDC12Q8WUD4 166 aaPredicted RBP18.34■□□□□ 0.53
SMC4-204ENST00000462787 LMBRD1Q9NUN5 540 aa18.34■□□□□ 0.53
SMC4-204ENST00000462787 MNAT1P51948 309 aa18.34■□□□□ 0.53
SMC4-204ENST00000462787 DNM1Q05193 864 aaKnown RBP18.34■□□□□ 0.53
SMC4-204ENST00000462787 PLCD4Q9BRC7 762 aa18.34■□□□□ 0.53
SMC4-204ENST00000462787 MCM10Q7L590 875 aa18.34■□□□□ 0.53
SMC4-204ENST00000462787 MRPL50Q8N5N7 158 aaKnown RBP18.34■□□□□ 0.53
SMC4-204ENST00000462787 TESK2Q96S53 571 aa18.34■□□□□ 0.53
SMC4-204ENST00000462787 ECHDC1Q9NTX5 307 aa18.34■□□□□ 0.53
SMC4-204ENST00000462787 DNAJC25Q9H1X3 360 aa18.33■□□□□ 0.53
SMC4-204ENST00000462787 INCENPQ9NQS7 918 aa18.33■□□□□ 0.53
SMC4-204ENST00000462787 F6X3S4 739 aa18.33■□□□□ 0.53
SMC4-204ENST00000462787 U2AF2P26368 475 aaKnown RBP eCLIP18.33■□□□□ 0.536e-7■■■■■ 34.1
SMC4-204ENST00000462787 VPS37DQ86XT2 251 aa18.33■□□□□ 0.53
SMC4-204ENST00000462787 NOL12Q9UGY1 213 aaKnown RBP eCLIP18.33■□□□□ 0.537e-44■■■■■ 137.4
SMC4-204ENST00000462787 ANKRD36BQ8N2N9 1353 aa18.33■□□□□ 0.52
SMC4-204ENST00000462787 NESP48681 1621 aa18.33■□□□□ 0.52
SMC4-204ENST00000462787 PLEKHM2Q8IWE5 1019 aa18.33■□□□□ 0.52
SMC4-204ENST00000462787 RBM33Q96EV2 1170 aaKnown RBP18.33■□□□□ 0.52
SMC4-204ENST00000462787 FAM177BA6PVY3 158 aa18.32■□□□□ 0.52
SMC4-204ENST00000462787 PSME1Q06323 249 aa18.32■□□□□ 0.52
SMC4-204ENST00000462787 NPHP3Q7Z494 1330 aa18.32■□□□□ 0.52
SMC4-204ENST00000462787 SPA17Q15506 151 aa18.32■□□□□ 0.52
SMC4-204ENST00000462787 ARHGEF11O15085 1522 aa18.32■□□□□ 0.52
SMC4-204ENST00000462787 CFAP43Q8NDM7 1665 aa18.32■□□□□ 0.52
SMC4-204ENST00000462787 CNNM3Q8NE01 707 aa18.32■□□□□ 0.52
SMC4-204ENST00000462787 CDK5RAP3Q96JB5 506 aa18.32■□□□□ 0.52
SMC4-204ENST00000462787 TAF4BQ92750 862 aa18.31■□□□□ 0.52
SMC4-204ENST00000462787 RAI14Q9P0K7 980 aa18.31■□□□□ 0.52
SMC4-204ENST00000462787 NACAP1Q9BZK3 213 aa18.31■□□□□ 0.52
SMC4-204ENST00000462787 SPINK5Q9NQ38 1064 aaPredicted RBP18.31■□□□□ 0.52
SMC4-204ENST00000462787 FAM135AQ9P2D6 1515 aa18.31■□□□□ 0.52
SMC4-204ENST00000462787 YEATS4O95619 227 aa18.31■□□□□ 0.52
SMC4-204ENST00000462787 GNAT3A8MTJ3 354 aa18.3■□□□□ 0.52
SMC4-204ENST00000462787 BIN1O00499 593 aa18.3■□□□□ 0.52
SMC4-204ENST00000462787 RNF187Q5TA31 235 aaPredicted RBP18.3■□□□□ 0.52
SMC4-204ENST00000462787 UTP14CQ5TAP6 766 aaKnown RBP18.3■□□□□ 0.52
SMC4-204ENST00000462787 BOLA2Q9H3K6 86 aa18.3■□□□□ 0.52
SMC4-204ENST00000462787 RSPH14Q9UHP6 348 aa18.3■□□□□ 0.52
SMC4-204ENST00000462787 CAPN2P17655 700 aa18.3■□□□□ 0.52
SMC4-204ENST00000462787 TTC31Q49AM3 519 aaPredicted RBP18.3■□□□□ 0.52
SMC4-204ENST00000462787 GOLGA1Q92805 767 aa18.3■□□□□ 0.52
SMC4-204ENST00000462787 UHRF1BP1Q6BDS2 1440 aa18.3■□□□□ 0.52
SMC4-204ENST00000462787 UBASH3AP57075 661 aa18.3■□□□□ 0.52
SMC4-204ENST00000462787 IPO4Q8TEX9 1081 aaKnown RBP18.3■□□□□ 0.52
SMC4-204ENST00000462787 PAFAH1B1P43034 410 aa18.29■□□□□ 0.52
SMC4-204ENST00000462787 GUCY1B3Q02153 619 aa18.29■□□□□ 0.52
SMC4-204ENST00000462787 CEP112Q8N8E3 955 aa18.29■□□□□ 0.52
SMC4-204ENST00000462787 TMX1Q9H3N1 280 aa18.29■□□□□ 0.52
SMC4-204ENST00000462787 FLIIQ13045 1269 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms