RNA–Protein interactions for RNA: ENST00000462258.1

SF3A3-204, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 2

Gene SF3A3, Length 527 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-204ENST00000462258 SRP68Q9UHB9 627 aaKnown RBP13.53□□□□□ -0.24
SF3A3-204ENST00000462258 PXDNLA1KZ92 1463 aa13.53□□□□□ -0.24
SF3A3-204ENST00000462258 AFDNP55196 1824 aaKnown RBP13.53□□□□□ -0.24
SF3A3-204ENST00000462258 MCM10Q7L590 875 aa13.52□□□□□ -0.25
SF3A3-204ENST00000462258 MYBBP1AQ9BQG0 1328 aaKnown RBP13.52□□□□□ -0.25
SF3A3-204ENST00000462258 NRXN2Q9P2S2 1712 aa13.51□□□□□ -0.25
SF3A3-204ENST00000462258 MAPK8IP3Q9UPT6 1336 aa13.51□□□□□ -0.25
SF3A3-204ENST00000462258 BTBD11A6QL63 1104 aa13.51□□□□□ -0.25
SF3A3-204ENST00000462258 YBX3P16989 372 aaKnown RBP eCLIP13.51□□□□□ -0.251e-7■■■□□ 16.2
SF3A3-204ENST00000462258 FMNL2Q96PY5 1086 aa13.51□□□□□ -0.25
SF3A3-204ENST00000462258 HTATSF1O43719 755 aaKnown RBP13.5□□□□□ -0.25
SF3A3-204ENST00000462258 STARD3NLO95772 234 aa13.5□□□□□ -0.25
SF3A3-204ENST00000462258 DCTN1Q14203 1278 aa13.5□□□□□ -0.25
SF3A3-204ENST00000462258 FKBP8Q14318 412 aa13.5□□□□□ -0.25
SF3A3-204ENST00000462258 PARP3Q9Y6F1 533 aa13.5□□□□□ -0.25
SF3A3-204ENST00000462258 ZPR1O75312 459 aa13.49□□□□□ -0.25
SF3A3-204ENST00000462258 USPL1Q5W0Q7 1092 aa13.49□□□□□ -0.25
SF3A3-204ENST00000462258 PLEKHF1Q96S99 279 aa13.49□□□□□ -0.25
SF3A3-204ENST00000462258 DLEC1Q9Y238 1755 aa13.49□□□□□ -0.25
SF3A3-204ENST00000462258 ARFGEF1Q9Y6D6 1849 aa13.48□□□□□ -0.25
SF3A3-204ENST00000462258 KCNQ3O43525 872 aa13.48□□□□□ -0.25
SF3A3-204ENST00000462258 GRIN3BO60391 1043 aa13.48□□□□□ -0.25
SF3A3-204ENST00000462258 CANXP27824 592 aaKnown RBP13.48□□□□□ -0.25
SF3A3-204ENST00000462258 ZEB1P37275 1124 aaPredicted RBP13.48□□□□□ -0.25
SF3A3-204ENST00000462258 DDR1Q08345 913 aa13.48□□□□□ -0.25
SF3A3-204ENST00000462258 TEX13AQ9BXU3 409 aaPredicted RBP13.48□□□□□ -0.25
SF3A3-204ENST00000462258 PNNQ9H307 717 aaKnown RBP13.48□□□□□ -0.25
SF3A3-204ENST00000462258 NFE2L2Q16236 605 aa13.47□□□□□ -0.25
SF3A3-204ENST00000462258 NARFQ9UHQ1 456 aa13.47□□□□□ -0.25
SF3A3-204ENST00000462258 WWC3Q9ULE0 1092 aa13.47□□□□□ -0.25
SF3A3-204ENST00000462258 EIF5P55010 431 aaKnown RBP13.46□□□□□ -0.25
SF3A3-204ENST00000462258 ZNF330Q9Y3S2 320 aaPredicted RBP13.46□□□□□ -0.25
SF3A3-204ENST00000462258 A0A087WZG4 1122 aa13.45□□□□□ -0.26
SF3A3-204ENST00000462258 POLRMTO00411 1230 aaKnown RBP13.45□□□□□ -0.26
SF3A3-204ENST00000462258 TGFB2P61812 414 aa13.45□□□□□ -0.26
SF3A3-204ENST00000462258 ANKRD31Q8N7Z5 1873 aa13.44□□□□□ -0.26
SF3A3-204ENST00000462258 IL6STP40189 918 aaPredicted RBP13.44□□□□□ -0.26
SF3A3-204ENST00000462258 TAF7Q15545 349 aaPredicted RBP13.44□□□□□ -0.26
SF3A3-204ENST00000462258 ZNF784Q8NCA9 323 aaPredicted RBP13.44□□□□□ -0.26
SF3A3-204ENST00000462258 THUMPD2Q9BTF0 503 aaKnown RBP13.44□□□□□ -0.26
SF3A3-204ENST00000462258 PRKRIP1Q9H875 184 aaPredicted RBP13.44□□□□□ -0.26
SF3A3-204ENST00000462258 BCL2L12Q9HB09 334 aa13.44□□□□□ -0.26
SF3A3-204ENST00000462258 COL11A2P13942 1736 aaPredicted RBP13.44□□□□□ -0.26
SF3A3-204ENST00000462258 PRAMEF22A3QJZ6 481 aa13.43□□□□□ -0.26
SF3A3-204ENST00000462258 A1BGP04217 495 aa13.43□□□□□ -0.26
SF3A3-204ENST00000462258 SNRPA1P09661 255 aaKnown RBP13.43□□□□□ -0.26
SF3A3-204ENST00000462258 TM4SF1P30408 202 aa13.43□□□□□ -0.26
SF3A3-204ENST00000462258 NFIXQ14938 502 aa13.43□□□□□ -0.26
SF3A3-204ENST00000462258 WDR43Q15061 677 aaKnown RBP eCLIP13.43□□□□□ -0.26
SF3A3-204ENST00000462258 NPM2Q86SE8 214 aaKnown RBP13.43□□□□□ -0.26
SF3A3-204ENST00000462258 DPEP1P16444 411 aa13.42□□□□□ -0.26
SF3A3-204ENST00000462258 PNISRQ8TF01 805 aaKnown RBP13.42□□□□□ -0.26
SF3A3-204ENST00000462258 A0A0G2JLW4 131 aa13.41□□□□□ -0.26
SF3A3-204ENST00000462258 PIP4K2AP48426 406 aaPredicted RBP13.41□□□□□ -0.26
SF3A3-204ENST00000462258 CCDC146Q8IYE0 955 aa13.41□□□□□ -0.26
SF3A3-204ENST00000462258 MIS18AQ9NYP9 233 aa13.41□□□□□ -0.26
SF3A3-204ENST00000462258 TBC1D2BQ9UPU7 963 aa13.41□□□□□ -0.26
SF3A3-204ENST00000462258 BCS1LQ9Y276 419 aa13.41□□□□□ -0.26
SF3A3-204ENST00000462258 USP16Q9Y5T5 823 aa13.41□□□□□ -0.26
SF3A3-204ENST00000462258 ADCY9O60503 1353 aa13.41□□□□□ -0.26
SF3A3-204ENST00000462258 CARMIL3Q8ND23 1372 aa13.41□□□□□ -0.26
SF3A3-204ENST00000462258 CACNA1SQ13698 1873 aa13.4□□□□□ -0.26
SF3A3-204ENST00000462258 RIPK4P57078 832 aa13.4□□□□□ -0.26
SF3A3-204ENST00000462258 LMOD3Q0VAK6 560 aa13.4□□□□□ -0.26
SF3A3-204ENST00000462258 BICDL1Q6ZP65 573 aa13.4□□□□□ -0.26
SF3A3-204ENST00000462258 ATP10DQ9P241 1426 aa13.39□□□□□ -0.27
SF3A3-204ENST00000462258 CAMTA2O94983 1202 aa13.39□□□□□ -0.27
SF3A3-204ENST00000462258 SERPINB2P05120 415 aa13.39□□□□□ -0.27
SF3A3-204ENST00000462258 TMPOP42166 694 aaKnown RBP13.39□□□□□ -0.27
SF3A3-204ENST00000462258 TBC1D9BQ66K14 1250 aa13.39□□□□□ -0.27
SF3A3-204ENST00000462258 DZIP3Q86Y13 1208 aaKnown RBP13.39□□□□□ -0.27
SF3A3-204ENST00000462258 ARFGEF2Q9Y6D5 1785 aa13.39□□□□□ -0.27
SF3A3-204ENST00000462258 KCNA3P22001 575 aa13.38□□□□□ -0.27
SF3A3-204ENST00000462258 CHRNA5P30532 468 aa13.38□□□□□ -0.27
SF3A3-204ENST00000462258 PIAS4Q8N2W9 510 aaPredicted RBP13.38□□□□□ -0.27
SF3A3-204ENST00000462258 RUNDC1Q96C34 613 aa13.38□□□□□ -0.27
SF3A3-204ENST00000462258 TSPYL4Q9UJ04 414 aa13.38□□□□□ -0.27
SF3A3-204ENST00000462258 RRP7AQ9Y3A4 280 aaKnown RBP13.38□□□□□ -0.27
SF3A3-204ENST00000462258 NUP98P52948 1817 aa13.38□□□□□ -0.27
SF3A3-204ENST00000462258 NBPF26B4DH59 902 aa13.37□□□□□ -0.27
SF3A3-204ENST00000462258 GIGYF1O75420 1035 aaPredicted RBP13.37□□□□□ -0.27
SF3A3-204ENST00000462258 EIF4A1P60842 406 aaKnown RBP13.37□□□□□ -0.27
SF3A3-204ENST00000462258 NBPF10Q6P3W6 841 aaKnown RBP13.37□□□□□ -0.27
SF3A3-204ENST00000462258 NBPF15Q8N660 670 aa13.37□□□□□ -0.27
SF3A3-204ENST00000462258 PIM2Q9P1W9 311 aa13.37□□□□□ -0.27
SF3A3-204ENST00000462258 ANKRD36CQ5JPF3 1778 aa13.36□□□□□ -0.27
SF3A3-204ENST00000462258 NEUROD2Q15784 382 aa13.36□□□□□ -0.27
SF3A3-204ENST00000462258 DALRD3Q5D0E6 543 aaKnown RBP13.36□□□□□ -0.27
SF3A3-204ENST00000462258 ADAMTS8Q9UP79 889 aa13.36□□□□□ -0.27
SF3A3-204ENST00000462258 ZNF652Q9Y2D9 606 aa13.36□□□□□ -0.27
SF3A3-204ENST00000462258 TIAM2Q8IVF5 1701 aa13.36□□□□□ -0.27
SF3A3-204ENST00000462258 TNRC6CQ9HCJ0 1690 aaKnown RBP13.35□□□□□ -0.27
SF3A3-204ENST00000462258 PRR5LQ6MZQ0 368 aa13.35□□□□□ -0.27
SF3A3-204ENST00000462258 CNBD1Q8NA66 436 aa13.35□□□□□ -0.27
SF3A3-204ENST00000462258 SETDB2Q96T68 719 aa13.35□□□□□ -0.27
SF3A3-204ENST00000462258 SBF1O95248 1867 aa13.35□□□□□ -0.27
SF3A3-204ENST00000462258 BABAM1Q9NWV8 329 aa13.34□□□□□ -0.27
SF3A3-204ENST00000462258 ERBB4Q15303 1308 aa13.34□□□□□ -0.27
SF3A3-204ENST00000462258 ZNF316A6NFI3 1004 aaPredicted RBP13.33□□□□□ -0.28
SF3A3-204ENST00000462258 RGL2O15211 777 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 232.9 ms