RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 MNS1Q8NEH6 495 aa7.42□□□□□ -1.22
VPS13D-202ENST00000460333 KDM2BQ8NHM5 1336 aa7.42□□□□□ -1.22
VPS13D-202ENST00000460333 MAP2P11137 1827 aaKnown RBP7.42□□□□□ -1.22
VPS13D-202ENST00000460333 GNAI2P04899 355 aa7.42□□□□□ -1.22
VPS13D-202ENST00000460333 CCDC70Q6NSX1 233 aa7.42□□□□□ -1.22
VPS13D-202ENST00000460333 MON2Q7Z3U7 1717 aa7.41□□□□□ -1.22
VPS13D-202ENST00000460333 TOM1L2Q6ZVM7 507 aa7.41□□□□□ -1.22
VPS13D-202ENST00000460333 STRN4Q9NRL3 753 aa7.41□□□□□ -1.22
VPS13D-202ENST00000460333 SHPRHQ149N8 1683 aa7.41□□□□□ -1.22
VPS13D-202ENST00000460333 HSP90AB4PQ58FF6 505 aa7.41□□□□□ -1.22
VPS13D-202ENST00000460333 NECTIN2Q92692 538 aa7.41□□□□□ -1.22
VPS13D-202ENST00000460333 GPATCH3Q96I76 525 aa7.41□□□□□ -1.22
VPS13D-202ENST00000460333 PRIMPOLQ96LW4 560 aa7.41□□□□□ -1.22
VPS13D-202ENST00000460333 MIS18AQ9NYP9 233 aa7.41□□□□□ -1.22
VPS13D-202ENST00000460333 SIPA1L2Q9P2F8 1722 aaPredicted RBP7.41□□□□□ -1.22
VPS13D-202ENST00000460333 UBTFL1P0CB47 393 aaPredicted RBP7.41□□□□□ -1.22
VPS13D-202ENST00000460333 RLBP1P12271 317 aa7.41□□□□□ -1.22
VPS13D-202ENST00000460333 NOC3LQ8WTT2 800 aaKnown RBP7.41□□□□□ -1.22
VPS13D-202ENST00000460333 TERF1P54274 439 aa7.41□□□□□ -1.22
VPS13D-202ENST00000460333 LEKR1Q6ZMV7 388 aa7.41□□□□□ -1.22
VPS13D-202ENST00000460333 TSPYL6Q8N831 410 aa7.41□□□□□ -1.22
VPS13D-202ENST00000460333 IGHDP01880 384 aa7.4□□□□□ -1.22
VPS13D-202ENST00000460333 HOXB7P09629 217 aa7.4□□□□□ -1.22
VPS13D-202ENST00000460333 USP8P40818 1118 aa7.4□□□□□ -1.22
VPS13D-202ENST00000460333 GNL2Q13823 731 aaKnown RBP7.4□□□□□ -1.22
VPS13D-202ENST00000460333 HSP90B2PQ58FF3 399 aa7.4□□□□□ -1.22
VPS13D-202ENST00000460333 ARHGEF25Q86VW2 580 aa7.4□□□□□ -1.22
VPS13D-202ENST00000460333 IFNL2Q8IZJ0 200 aa7.4□□□□□ -1.22
VPS13D-202ENST00000460333 ERCC4Q92889 916 aaPredicted RBP7.4□□□□□ -1.22
VPS13D-202ENST00000460333 ADAMTSL3P82987 1691 aa7.4□□□□□ -1.22
VPS13D-202ENST00000460333 K7ELQ4 463 aaPredicted RBP7.4□□□□□ -1.22
VPS13D-202ENST00000460333 HS1BP3Q53T59 392 aa7.4□□□□□ -1.22
VPS13D-202ENST00000460333 CCDC112Q8NEF3 446 aa7.4□□□□□ -1.22
VPS13D-202ENST00000460333 LMTK3Q96Q04 1460 aa7.4□□□□□ -1.22
VPS13D-202ENST00000460333 TPD52L1Q16890 204 aaPredicted RBP7.4□□□□□ -1.22
VPS13D-202ENST00000460333 CHD1LQ86WJ1 897 aa7.4□□□□□ -1.22
VPS13D-202ENST00000460333 LNPKQ9C0E8 428 aa7.4□□□□□ -1.22
VPS13D-202ENST00000460333 SRCIN1Q9C0H9 1055 aa7.4□□□□□ -1.22
VPS13D-202ENST00000460333 ZBTB40Q9NUA8 1239 aa7.4□□□□□ -1.22
VPS13D-202ENST00000460333 C9orf78Q9NZ63 289 aaPredicted RBP7.4□□□□□ -1.22
VPS13D-202ENST00000460333 PCDHB15Q9Y5E8 787 aa7.4□□□□□ -1.22
VPS13D-202ENST00000460333 AKAP12Q02952 1782 aa7.4□□□□□ -1.23
VPS13D-202ENST00000460333 CABP4P57796 275 aa7.4□□□□□ -1.23
VPS13D-202ENST00000460333 FOXD4L5Q5VV16 416 aaPredicted RBP7.4□□□□□ -1.23
VPS13D-202ENST00000460333 FOXD4L4Q8WXT5 416 aaPredicted RBP7.4□□□□□ -1.23
VPS13D-202ENST00000460333 DCCP43146 1447 aa7.39□□□□□ -1.23
VPS13D-202ENST00000460333 CGNQ9P2M7 1197 aaKnown RBP7.39□□□□□ -1.23
VPS13D-202ENST00000460333 TRIM6-TRIM34B2RNG4 842 aa7.39□□□□□ -1.23
VPS13D-202ENST00000460333 APBB1O00213 710 aa7.39□□□□□ -1.23
VPS13D-202ENST00000460333 FLIIQ13045 1269 aa7.39□□□□□ -1.23
VPS13D-202ENST00000460333 HOMER1Q86YM7 354 aa7.39□□□□□ -1.23
VPS13D-202ENST00000460333 PPP1R1BQ9UD71 204 aaPredicted RBP7.39□□□□□ -1.23
VPS13D-202ENST00000460333 XRN1Q8IZH2 1706 aaKnown RBP7.39□□□□□ -1.23
VPS13D-202ENST00000460333 C1orf167Q5SNV9 1468 aa7.39□□□□□ -1.23
VPS13D-202ENST00000460333 SSH2Q76I76 1423 aa7.39□□□□□ -1.23
VPS13D-202ENST00000460333 ADAMTS2O95450 1211 aa7.39□□□□□ -1.23
VPS13D-202ENST00000460333 NBPF6Q5VWK0 638 aa7.39□□□□□ -1.23
VPS13D-202ENST00000460333 MPRIPQ6WCQ1 1025 aa7.39□□□□□ -1.23
VPS13D-202ENST00000460333 NBPF4Q96M43 638 aa7.39□□□□□ -1.23
VPS13D-202ENST00000460333 DBF4Q9UBU7 674 aaPredicted RBP7.39□□□□□ -1.23
VPS13D-202ENST00000460333 ZNF142P52746 1687 aaPredicted RBP7.39□□□□□ -1.23
VPS13D-202ENST00000460333 NAP1L2Q9ULW6 460 aaPredicted RBP7.39□□□□□ -1.23
VPS13D-202ENST00000460333 LRRC59Q96AG4 307 aaKnown RBP7.38□□□□□ -1.23
VPS13D-202ENST00000460333 DNAJC2Q99543 621 aaKnown RBP7.38□□□□□ -1.23
VPS13D-202ENST00000460333 SLAIN2Q9P270 581 aa7.38□□□□□ -1.23
VPS13D-202ENST00000460333 KDRP35968 1356 aa7.38□□□□□ -1.23
VPS13D-202ENST00000460333 RDXP35241 583 aaKnown RBP7.38□□□□□ -1.23
VPS13D-202ENST00000460333 DEF6Q9H4E7 631 aa7.38□□□□□ -1.23
VPS13D-202ENST00000460333 C1orf115Q9H7X2 142 aa7.38□□□□□ -1.23
VPS13D-202ENST00000460333 HYPKQ9NX55 129 aa7.38□□□□□ -1.23
VPS13D-202ENST00000460333 RIC3Q7Z5B4 369 aa7.38□□□□□ -1.23
VPS13D-202ENST00000460333 KIF2AO00139 706 aaPredicted RBP7.38□□□□□ -1.23
VPS13D-202ENST00000460333 RNMTO43148 476 aaKnown RBP7.38□□□□□ -1.23
VPS13D-202ENST00000460333 PRPF40AO75400 957 aaKnown RBP7.38□□□□□ -1.23
VPS13D-202ENST00000460333 TPM1P09493 284 aa7.38□□□□□ -1.23
VPS13D-202ENST00000460333 RNF214Q8ND24 703 aa7.38□□□□□ -1.23
VPS13D-202ENST00000460333 BBXQ8WY36 941 aaPredicted RBP7.37□□□□□ -1.23
VPS13D-202ENST00000460333 TNNQ9UQP3 1299 aa7.37□□□□□ -1.23
VPS13D-202ENST00000460333 ABCC4O15439 1325 aa7.37□□□□□ -1.23
VPS13D-202ENST00000460333 ZBTB7BO15156 539 aaPredicted RBP7.37□□□□□ -1.23
VPS13D-202ENST00000460333 OFD1O75665 1012 aa7.37□□□□□ -1.23
VPS13D-202ENST00000460333 SMC5Q8IY18 1101 aa7.37□□□□□ -1.23
VPS13D-202ENST00000460333 CCDC94Q9BW85 323 aaPredicted RBP7.37□□□□□ -1.23
VPS13D-202ENST00000460333 NAT10Q9H0A0 1025 aaKnown RBP7.37□□□□□ -1.23
VPS13D-202ENST00000460333 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.37□□□□□ -1.232e-6■■□□□ 11.9
VPS13D-202ENST00000460333 FMN2Q9NZ56 1722 aa7.37□□□□□ -1.23
VPS13D-202ENST00000460333 XRCC6P12956 609 aaKnown RBP eCLIP7.37□□□□□ -1.23
VPS13D-202ENST00000460333 NOL8Q76FK4 1167 aaKnown RBP7.37□□□□□ -1.23
VPS13D-202ENST00000460333 KIF20AO95235 890 aa7.36□□□□□ -1.23
VPS13D-202ENST00000460333 CBX1P83916 185 aa7.36□□□□□ -1.23
VPS13D-202ENST00000460333 NUCB1Q02818 461 aa7.36□□□□□ -1.23
VPS13D-202ENST00000460333 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.36□□□□□ -1.23
VPS13D-202ENST00000460333 CHRNA2Q15822 529 aa7.36□□□□□ -1.23
VPS13D-202ENST00000460333 CCAR2Q8N163 923 aaKnown RBP7.36□□□□□ -1.23
VPS13D-202ENST00000460333 RUFY2Q8WXA3 655 aa7.36□□□□□ -1.23
VPS13D-202ENST00000460333 DCAF5Q96JK2 942 aa7.36□□□□□ -1.23
VPS13D-202ENST00000460333 TIGD1Q96MW7 591 aa7.36□□□□□ -1.23
VPS13D-202ENST00000460333 PRDM10Q9NQV6 1147 aa7.36□□□□□ -1.23
VPS13D-202ENST00000460333 SMC3Q9UQE7 1217 aa7.36□□□□□ -1.23
VPS13D-202ENST00000460333 NCAPD2Q15021 1401 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms