RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-208	ENST00000459947	CRKL	P46109	303 aa	Known RBP	13.92	□□□□□ -0.18
UBR4-208	ENST00000459947	FAM9B	Q8IZU0	186 aa		13.92	□□□□□ -0.18
UBR4-208	ENST00000459947	COL24A1	Q17RW2	1714 aa		13.92	□□□□□ -0.18
UBR4-208	ENST00000459947	CHL1	O00533	1208 aa		13.92	□□□□□ -0.18
UBR4-208	ENST00000459947	RRP7A	Q9Y3A4	280 aa	Known RBP	13.92	□□□□□ -0.18
UBR4-208	ENST00000459947	EIF4A1	P60842	406 aa	Known RBP	13.91	□□□□□ -0.18
UBR4-208	ENST00000459947	SLC4A9	Q96Q91	983 aa		13.91	□□□□□ -0.18
UBR4-208	ENST00000459947	IL6ST	P40189	918 aa	Predicted RBP	13.9	□□□□□ -0.18
UBR4-208	ENST00000459947	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	13.9	□□□□□ -0.19
UBR4-208	ENST00000459947	MSH5	O43196	834 aa		13.9	□□□□□ -0.19
UBR4-208	ENST00000459947	RFC4	P35249	363 aa		13.89	□□□□□ -0.19
UBR4-208	ENST00000459947	NLGN1	Q8N2Q7	840 aa		13.89	□□□□□ -0.19
UBR4-208	ENST00000459947	ZNF853	P0CG23	659 aa		13.89	□□□□□ -0.19
UBR4-208	ENST00000459947	MYH16	Q9H6N6	1097 aa		13.89	□□□□□ -0.19
UBR4-208	ENST00000459947	COL15A1	P39059	1388 aa		13.88	□□□□□ -0.19
UBR4-208	ENST00000459947	COL23A1	Q86Y22	540 aa	Predicted RBP	13.88	□□□□□ -0.19
UBR4-208	ENST00000459947	GIGYF1	O75420	1035 aa	Predicted RBP	13.88	□□□□□ -0.19
UBR4-208	ENST00000459947	INTS5	Q6P9B9	1019 aa	Known RBP	13.88	□□□□□ -0.19
UBR4-208	ENST00000459947	WWC1	Q8IX03	1113 aa		13.88	□□□□□ -0.19
UBR4-208	ENST00000459947	THUMPD2	Q9BTF0	503 aa	Known RBP	13.88	□□□□□ -0.19
UBR4-208	ENST00000459947	ZPR1	O75312	459 aa		13.87	□□□□□ -0.19
UBR4-208	ENST00000459947	KCNQ4	P56696	695 aa		13.87	□□□□□ -0.19
UBR4-208	ENST00000459947	PPP1R1B	Q9UD71	204 aa	Predicted RBP	13.87	□□□□□ -0.19
UBR4-208	ENST00000459947	ZNF652	Q9Y2D9	606 aa		13.86	□□□□□ -0.19
UBR4-208	ENST00000459947	NARF	Q9UHQ1	456 aa		13.86	□□□□□ -0.19
UBR4-208	ENST00000459947	LAS1L	Q9Y4W2	734 aa	Known RBP	13.86	□□□□□ -0.19
UBR4-208	ENST00000459947	EIF5	P55010	431 aa	Known RBP	13.86	□□□□□ -0.19
UBR4-208	ENST00000459947	KCNQ3	O43525	872 aa		13.85	□□□□□ -0.19
UBR4-208	ENST00000459947	USP42	Q9H9J4	1324 aa	Known RBP	13.85	□□□□□ -0.19
UBR4-208	ENST00000459947	MYH14	Q7Z406	1995 aa	Known RBP	13.85	□□□□□ -0.19
UBR4-208	ENST00000459947	ZBTB1	Q9Y2K1	713 aa		13.85	□□□□□ -0.19
UBR4-208	ENST00000459947	PHF14	O94880	888 aa		13.85	□□□□□ -0.19
UBR4-208	ENST00000459947	C4A	P0C0L4	1744 aa		13.85	□□□□□ -0.19
UBR4-208	ENST00000459947	ARHGEF1	Q92888	912 aa	Known RBP	13.84	□□□□□ -0.19
UBR4-208	ENST00000459947	SCN7A	Q01118	1682 aa		13.84	□□□□□ -0.19
UBR4-208	ENST00000459947	MBIP	Q9NS73	344 aa		13.84	□□□□□ -0.19
UBR4-208	ENST00000459947	CANX	P27824	592 aa	Known RBP	13.83	□□□□□ -0.2
UBR4-208	ENST00000459947	GOLGA2	Q08379	1002 aa		13.83	□□□□□ -0.2
UBR4-208	ENST00000459947	MIER1	Q8N108	512 aa		13.83	□□□□□ -0.2
UBR4-208	ENST00000459947	ZBTB7A	O95365	584 aa		13.83	□□□□□ -0.2
UBR4-208	ENST00000459947	KIF6	Q6ZMV9	814 aa		13.83	□□□□□ -0.2
UBR4-208	ENST00000459947	MIS18A	Q9NYP9	233 aa		13.83	□□□□□ -0.2
UBR4-208	ENST00000459947	CLEC4G	Q6UXB4	293 aa		13.82	□□□□□ -0.2
UBR4-208	ENST00000459947		E9PSI1	815 aa		13.82	□□□□□ -0.2
UBR4-208	ENST00000459947	ARX	Q96QS3	562 aa		13.82	□□□□□ -0.2
UBR4-208	ENST00000459947	DCAF8L1	A6NGE4	600 aa		13.82	□□□□□ -0.2
UBR4-208	ENST00000459947	PDZRN3	Q9UPQ7	1066 aa		13.82	□□□□□ -0.2
UBR4-208	ENST00000459947	USP16	Q9Y5T5	823 aa		13.82	□□□□□ -0.2
UBR4-208	ENST00000459947	BCOR	Q6W2J9	1755 aa		13.81	□□□□□ -0.2
UBR4-208	ENST00000459947	ERVV-1	B6SEH8	477 aa		13.81	□□□□□ -0.2
UBR4-208	ENST00000459947	PARP3	Q9Y6F1	533 aa		13.81	□□□□□ -0.2
UBR4-208	ENST00000459947	CCDC30	Q5VVM6	783 aa		13.81	□□□□□ -0.2
UBR4-208	ENST00000459947	DUSP27	Q5VZP5	1158 aa		13.81	□□□□□ -0.2
UBR4-208	ENST00000459947	HDGFL1	Q5TGJ6	251 aa		13.81	□□□□□ -0.2
UBR4-208	ENST00000459947	DDX21	Q9NR30	783 aa	Known RBP eCLIP	13.81	□□□□□ -0.2
UBR4-208	ENST00000459947	HYPK	Q9NX55	129 aa		13.81	□□□□□ -0.2
UBR4-208	ENST00000459947	DBF4	Q9UBU7	674 aa	Predicted RBP	13.81	□□□□□ -0.2
UBR4-208	ENST00000459947	ATF5	Q9Y2D1	282 aa	Predicted RBP	13.81	□□□□□ -0.2
UBR4-208	ENST00000459947	HSP90AB3P	Q58FF7	597 aa		13.8	□□□□□ -0.2
UBR4-208	ENST00000459947	SGIP1	Q9BQI5	828 aa		13.8	□□□□□ -0.2
UBR4-208	ENST00000459947	DZIP3	Q86Y13	1208 aa	Known RBP	13.8	□□□□□ -0.2
UBR4-208	ENST00000459947	ZNF428	Q96B54	188 aa		13.8	□□□□□ -0.2
UBR4-208	ENST00000459947	GYS1	P13807	737 aa		13.8	□□□□□ -0.2
UBR4-208	ENST00000459947	PTGER2	P43116	358 aa		13.8	□□□□□ -0.2
UBR4-208	ENST00000459947	CD2AP	Q9Y5K6	639 aa		13.8	□□□□□ -0.2
UBR4-208	ENST00000459947	A1BG	P04217	495 aa		13.79	□□□□□ -0.2
UBR4-208	ENST00000459947	CT47B1	P0C2W7	299 aa	Predicted RBP	13.79	□□□□□ -0.2
UBR4-208	ENST00000459947	STK31	Q9BXU1	1019 aa		13.79	□□□□□ -0.2
UBR4-208	ENST00000459947	ZNF521	Q96K83	1311 aa		13.79	□□□□□ -0.2
UBR4-208	ENST00000459947	IBTK	Q9P2D0	1353 aa	Predicted RBP	13.78	□□□□□ -0.2
UBR4-208	ENST00000459947	CACNA1F	O60840	1977 aa		13.78	□□□□□ -0.2
UBR4-208	ENST00000459947	FANCI	Q9NVI1	1328 aa		13.78	□□□□□ -0.2
UBR4-208	ENST00000459947	DDX58	O95786	925 aa	Known RBP	13.77	□□□□□ -0.21
UBR4-208	ENST00000459947	EIF2S2	P20042	333 aa	Known RBP	13.77	□□□□□ -0.21
UBR4-208	ENST00000459947	USPL1	Q5W0Q7	1092 aa		13.77	□□□□□ -0.21
UBR4-208	ENST00000459947	ZNF330	Q9Y3S2	320 aa	Predicted RBP	13.77	□□□□□ -0.21
UBR4-208	ENST00000459947	MAP3K15	Q6ZN16	1313 aa		13.77	□□□□□ -0.21
UBR4-208	ENST00000459947	RNF123	Q5XPI4	1314 aa		13.77	□□□□□ -0.21
UBR4-208	ENST00000459947	CARMIL3	Q8ND23	1372 aa		13.77	□□□□□ -0.21
UBR4-208	ENST00000459947	CAMTA2	O94983	1202 aa		13.76	□□□□□ -0.21
UBR4-208	ENST00000459947	TWISTNB	Q3B726	338 aa	Predicted RBP	13.76	□□□□□ -0.21
UBR4-208	ENST00000459947	NBPF26	B4DH59	902 aa		13.76	□□□□□ -0.21
UBR4-208	ENST00000459947	MMP10	P09238	476 aa		13.76	□□□□□ -0.21
UBR4-208	ENST00000459947	NBPF10	Q6P3W6	841 aa	Known RBP	13.76	□□□□□ -0.21
UBR4-208	ENST00000459947	NBPF15	Q8N660	670 aa		13.76	□□□□□ -0.21
UBR4-208	ENST00000459947	ATP10D	Q9P241	1426 aa		13.76	□□□□□ -0.21
UBR4-208	ENST00000459947	NYX	Q9GZU5	481 aa		13.75	□□□□□ -0.21
UBR4-208	ENST00000459947	PARP10	Q53GL7	1025 aa		13.75	□□□□□ -0.21
UBR4-208	ENST00000459947	TM4SF1	P30408	202 aa		13.75	□□□□□ -0.21
UBR4-208	ENST00000459947	SETDB2	Q96T68	719 aa		13.75	□□□□□ -0.21
UBR4-208	ENST00000459947	PDGFD	Q9GZP0	370 aa	Predicted RBP	13.75	□□□□□ -0.21
UBR4-208	ENST00000459947	C10orf71	Q711Q0	1435 aa		13.75	□□□□□ -0.21
UBR4-208	ENST00000459947	MSL1	Q68DK7	614 aa		13.74	□□□□□ -0.21
UBR4-208	ENST00000459947	SRP68	Q9UHB9	627 aa	Known RBP	13.74	□□□□□ -0.21
UBR4-208	ENST00000459947	PRAMEF22	A3QJZ6	481 aa		13.74	□□□□□ -0.21
UBR4-208	ENST00000459947	HSP90B1	P14625	803 aa	Known RBP	13.74	□□□□□ -0.21
UBR4-208	ENST00000459947	TGFB2	P61812	414 aa		13.74	□□□□□ -0.21
UBR4-208	ENST00000459947	AMIGO3	Q86WK7	504 aa		13.74	□□□□□ -0.21
UBR4-208	ENST00000459947	NRXN2	Q9P2S2	1712 aa		13.74	□□□□□ -0.21
UBR4-208	ENST00000459947	TBC1D2B	Q9UPU7	963 aa		13.73	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms