RNA–Protein interactions for RNA: ENST00000457373.5

RFX3-210, Transcript of regulatory factor X3, humanhuman

TSL 5

Gene RFX3, Length 822 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-210ENST00000457373 THUMPD2Q9BTF0 503 aaKnown RBP13.28□□□□□ -0.28
RFX3-210ENST00000457373 KCNQ3O43525 872 aa13.27□□□□□ -0.29
RFX3-210ENST00000457373 ZBTB7AO95365 584 aa13.27□□□□□ -0.29
RFX3-210ENST00000457373 ZNF790Q6PG37 636 aa13.27□□□□□ -0.29
RFX3-210ENST00000457373 SMIM5Q71RC9 77 aa13.27□□□□□ -0.29
RFX3-210ENST00000457373 PNISRQ8TF01 805 aaKnown RBP13.27□□□□□ -0.29
RFX3-210ENST00000457373 PNPLA7Q6ZV29 1317 aa13.27□□□□□ -0.29
RFX3-210ENST00000457373 QSER1Q2KHR3 1735 aa13.27□□□□□ -0.29
RFX3-210ENST00000457373 CASZ1Q86V15 1759 aa13.27□□□□□ -0.29
RFX3-210ENST00000457373 APAF1O14727 1248 aa13.26□□□□□ -0.29
RFX3-210ENST00000457373 PHF14O94880 888 aa13.26□□□□□ -0.29
RFX3-210ENST00000457373 TJP1Q07157 1748 aa13.26□□□□□ -0.29
RFX3-210ENST00000457373 TAF7Q15545 349 aaPredicted RBP13.26□□□□□ -0.29
RFX3-210ENST00000457373 ZNF831Q5JPB2 1677 aa13.26□□□□□ -0.29
RFX3-210ENST00000457373 DNAJC10Q8IXB1 793 aa13.26□□□□□ -0.29
RFX3-210ENST00000457373 MIS18AQ9NYP9 233 aa13.26□□□□□ -0.29
RFX3-210ENST00000457373 UBR2Q8IWV8 1755 aa13.25□□□□□ -0.29
RFX3-210ENST00000457373 COL5A3P25940 1745 aaPredicted RBP13.25□□□□□ -0.29
RFX3-210ENST00000457373 KCPQ6ZWJ8 1503 aa13.25□□□□□ -0.29
RFX3-210ENST00000457373 SENP3-EIF4A1A0A087X0R7 540 aa13.25□□□□□ -0.29
RFX3-210ENST00000457373 GNPATO15228 680 aa13.25□□□□□ -0.29
RFX3-210ENST00000457373 LMOD3Q0VAK6 560 aa13.25□□□□□ -0.29
RFX3-210ENST00000457373 COL23A1Q86Y22 540 aaPredicted RBP13.25□□□□□ -0.29
RFX3-210ENST00000457373 FAM9BQ8IZU0 186 aa13.25□□□□□ -0.29
RFX3-210ENST00000457373 ZNF496Q96IT1 587 aaPredicted RBP13.25□□□□□ -0.29
RFX3-210ENST00000457373 SPON1Q9HCB6 807 aa13.25□□□□□ -0.29
RFX3-210ENST00000457373 UBR3Q6ZT12 1888 aa13.25□□□□□ -0.29
RFX3-210ENST00000457373 POTEDQ86YR6 584 aa13.24□□□□□ -0.29
RFX3-210ENST00000457373 FMNL2Q96PY5 1086 aa13.24□□□□□ -0.29
RFX3-210ENST00000457373 MYH14Q7Z406 1995 aaKnown RBP13.23□□□□□ -0.29
RFX3-210ENST00000457373 CRKLP46109 303 aaKnown RBP13.23□□□□□ -0.29
RFX3-210ENST00000457373 RC3H1Q5TC82 1133 aaKnown RBP13.23□□□□□ -0.29
RFX3-210ENST00000457373 DIEXFQ68CQ4 756 aaKnown RBP13.23□□□□□ -0.29
RFX3-210ENST00000457373 AMIGO3Q86WK7 504 aa13.23□□□□□ -0.29
RFX3-210ENST00000457373 FLAD1Q8NFF5 587 aa13.23□□□□□ -0.29
RFX3-210ENST00000457373 TRIM35Q9UPQ4 493 aa13.23□□□□□ -0.29
RFX3-210ENST00000457373 RTCBQ9Y3I0 505 aaKnown RBP13.23□□□□□ -0.29
RFX3-210ENST00000457373 HEG1Q9ULI3 1381 aa13.22□□□□□ -0.29
RFX3-210ENST00000457373 CNTNAP4Q9C0A0 1308 aa13.22□□□□□ -0.29
RFX3-210ENST00000457373 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.22□□□□□ -0.29
RFX3-210ENST00000457373 SLC16A10Q8TF71 515 aa13.22□□□□□ -0.29
RFX3-210ENST00000457373 MTFR1LQ9H019 292 aa13.22□□□□□ -0.29
RFX3-210ENST00000457373 CIZ1Q9ULV3 898 aaPredicted RBP13.22□□□□□ -0.29
RFX3-210ENST00000457373 LAS1LQ9Y4W2 734 aaKnown RBP13.22□□□□□ -0.29
RFX3-210ENST00000457373 RPS6KA4O75676 772 aa13.21□□□□□ -0.29
RFX3-210ENST00000457373 CYP19A1P11511 503 aaPredicted RBP13.21□□□□□ -0.29
RFX3-210ENST00000457373 SSFA2P28290 1259 aa13.21□□□□□ -0.29
RFX3-210ENST00000457373 TRAPPC3LQ5T215 181 aa13.21□□□□□ -0.29
RFX3-210ENST00000457373 KDM3BQ7LBC6 1761 aa13.21□□□□□ -0.29
RFX3-210ENST00000457373 LRP5O75197 1615 aa13.21□□□□□ -0.3
RFX3-210ENST00000457373 CICQ96RK0 1608 aaPredicted RBP13.21□□□□□ -0.3
RFX3-210ENST00000457373 PRAMEF22A3QJZ6 481 aa13.2□□□□□ -0.3
RFX3-210ENST00000457373 CANXP27824 592 aaKnown RBP13.2□□□□□ -0.3
RFX3-210ENST00000457373 MSL1Q68DK7 614 aa13.2□□□□□ -0.3
RFX3-210ENST00000457373 INTS5Q6P9B9 1019 aaKnown RBP13.2□□□□□ -0.3
RFX3-210ENST00000457373 ARHGEF1Q92888 912 aaKnown RBP13.2□□□□□ -0.3
RFX3-210ENST00000457373 TEX13AQ9BXU3 409 aaPredicted RBP13.2□□□□□ -0.3
RFX3-210ENST00000457373 CCDC87Q9NVE4 849 aa13.2□□□□□ -0.3
RFX3-210ENST00000457373 PPP1R1BQ9UD71 204 aaPredicted RBP13.2□□□□□ -0.3
RFX3-210ENST00000457373 TSPYL4Q9UJ04 414 aa13.2□□□□□ -0.3
RFX3-210ENST00000457373 SALL2Q9Y467 1007 aaPredicted RBP13.2□□□□□ -0.3
RFX3-210ENST00000457373 STARD3NLO95772 234 aa13.19□□□□□ -0.3
RFX3-210ENST00000457373 SNRPA1P09661 255 aaKnown RBP13.19□□□□□ -0.3
RFX3-210ENST00000457373 ZBTB1Q9Y2K1 713 aa13.19□□□□□ -0.3
RFX3-210ENST00000457373 USP16Q9Y5T5 823 aa13.19□□□□□ -0.3
RFX3-210ENST00000457373 A1BGP04217 495 aa13.18□□□□□ -0.3
RFX3-210ENST00000457373 EIF4A1P60842 406 aaKnown RBP13.18□□□□□ -0.3
RFX3-210ENST00000457373 POLD1P28340 1107 aa13.17□□□□□ -0.3
RFX3-210ENST00000457373 RFC4P35249 363 aa13.17□□□□□ -0.3
RFX3-210ENST00000457373 PTGER2P43116 358 aa13.17□□□□□ -0.3
RFX3-210ENST00000457373 ZNF330Q9Y3S2 320 aaPredicted RBP13.17□□□□□ -0.3
RFX3-210ENST00000457373 CCER2I3L3R5 266 aa13.16□□□□□ -0.3
RFX3-210ENST00000457373 PIP4K2AP48426 406 aaPredicted RBP13.16□□□□□ -0.3
RFX3-210ENST00000457373 SGIP1Q9BQI5 828 aa13.16□□□□□ -0.3
RFX3-210ENST00000457373 BABAM1Q9NWV8 329 aa13.16□□□□□ -0.3
RFX3-210ENST00000457373 ZBTB47Q9UFB7 747 aaPredicted RBP13.16□□□□□ -0.3
RFX3-210ENST00000457373 SOS1Q07889 1333 aaPredicted RBP13.15□□□□□ -0.3
RFX3-210ENST00000457373 CHL1O00533 1208 aa13.15□□□□□ -0.3
RFX3-210ENST00000457373 ARXQ96QS3 562 aa13.15□□□□□ -0.3
RFX3-210ENST00000457373 SRP68Q9UHB9 627 aaKnown RBP13.15□□□□□ -0.3
RFX3-210ENST00000457373 C4AP0C0L4 1744 aa13.15□□□□□ -0.3
RFX3-210ENST00000457373 COL24A1Q17RW2 1714 aa13.14□□□□□ -0.31
RFX3-210ENST00000457373 GIGYF1O75420 1035 aaPredicted RBP13.14□□□□□ -0.31
RFX3-210ENST00000457373 CALD1Q05682 793 aaKnown RBP13.14□□□□□ -0.31
RFX3-210ENST00000457373 NPM2Q86SE8 214 aaKnown RBP13.14□□□□□ -0.31
RFX3-210ENST00000457373 LAMB4A4D0S4 1761 aa13.13□□□□□ -0.31
RFX3-210ENST00000457373 COL15A1P39059 1388 aa13.13□□□□□ -0.31
RFX3-210ENST00000457373 ZPR1O75312 459 aa13.13□□□□□ -0.31
RFX3-210ENST00000457373 GYS1P13807 737 aa13.13□□□□□ -0.31
RFX3-210ENST00000457373 EIF2S2P20042 333 aaKnown RBP13.13□□□□□ -0.31
RFX3-210ENST00000457373 EIF5P55010 431 aaKnown RBP13.13□□□□□ -0.31
RFX3-210ENST00000457373 GNAI1P63096 354 aa13.13□□□□□ -0.31
RFX3-210ENST00000457373 CCDC27Q2M243 656 aa13.13□□□□□ -0.31
RFX3-210ENST00000457373 USPL1Q5W0Q7 1092 aa13.13□□□□□ -0.31
RFX3-210ENST00000457373 WWC1Q8IX03 1113 aa13.13□□□□□ -0.31
RFX3-210ENST00000457373 A0A087WZG4 1122 aa13.12□□□□□ -0.31
RFX3-210ENST00000457373 IL6STP40189 918 aaPredicted RBP13.12□□□□□ -0.31
RFX3-210ENST00000457373 KRT24Q2M2I5 525 aa13.12□□□□□ -0.31
RFX3-210ENST00000457373 HS6ST3Q8IZP7 471 aa13.12□□□□□ -0.31
RFX3-210ENST00000457373 NLGN1Q8N2Q7 840 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms