RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 PARP3Q9Y6F1 533 aa25.81■■□□□ 1.72
USP40-207ENST00000450940 BTBD11A6QL63 1104 aa25.8■■□□□ 1.72
USP40-207ENST00000450940 TM4SF1P30408 202 aa25.8■■□□□ 1.72
USP40-207ENST00000450940 TGFB2P61812 414 aa25.8■■□□□ 1.72
USP40-207ENST00000450940 FMNL2Q96PY5 1086 aa25.8■■□□□ 1.72
USP40-207ENST00000450940 NARFQ9UHQ1 456 aa25.8■■□□□ 1.72
USP40-207ENST00000450940 COL15A1P39059 1388 aa25.8■■□□□ 1.72
USP40-207ENST00000450940 MCM10Q7L590 875 aa25.79■■□□□ 1.72
USP40-207ENST00000450940 ZNF784Q8NCA9 323 aaPredicted RBP25.79■■□□□ 1.72
USP40-207ENST00000450940 PXDNLA1KZ92 1463 aa25.79■■□□□ 1.72
USP40-207ENST00000450940 KCNQ3O43525 872 aa25.78■■□□□ 1.72
USP40-207ENST00000450940 ZPR1O75312 459 aa25.78■■□□□ 1.72
USP40-207ENST00000450940 EIF5P55010 431 aaKnown RBP25.78■■□□□ 1.72
USP40-207ENST00000450940 N4BP2Q86UW6 1770 aaPredicted RBP25.77■■□□□ 1.72
USP40-207ENST00000450940 DDR1Q08345 913 aa25.77■■□□□ 1.72
USP40-207ENST00000450940 USPL1Q5W0Q7 1092 aa25.77■■□□□ 1.72
USP40-207ENST00000450940 NEFMP07197 916 aa25.75■■□□□ 1.71
USP40-207ENST00000450940 CANXP27824 592 aaKnown RBP25.75■■□□□ 1.71
USP40-207ENST00000450940 DCTN1Q14203 1278 aa25.75■■□□□ 1.71
USP40-207ENST00000450940 PNNQ9H307 717 aaKnown RBP25.75■■□□□ 1.71
USP40-207ENST00000450940 BRCA1P38398 1863 aaKnown RBP25.74■■□□□ 1.71
USP40-207ENST00000450940 POLRMTO00411 1230 aaKnown RBP25.74■■□□□ 1.71
USP40-207ENST00000450940 BCL2L12Q9HB09 334 aa25.74■■□□□ 1.71
USP40-207ENST00000450940 A0A087WZG4 1122 aa25.73■■□□□ 1.71
USP40-207ENST00000450940 AFDNP55196 1824 aaKnown RBP25.72■■□□□ 1.71
USP40-207ENST00000450940 NRXN2Q9P2S2 1712 aa25.72■■□□□ 1.71
USP40-207ENST00000450940 MYBBP1AQ9BQG0 1328 aaKnown RBP25.72■■□□□ 1.71
USP40-207ENST00000450940 IL6STP40189 918 aaPredicted RBP25.72■■□□□ 1.71
USP40-207ENST00000450940 TAF7Q15545 349 aaPredicted RBP25.72■■□□□ 1.71
USP40-207ENST00000450940 NFE2L2Q16236 605 aa25.72■■□□□ 1.71
USP40-207ENST00000450940 A0A0G2JLW4 131 aa25.71■■□□□ 1.71
USP40-207ENST00000450940 NFIXQ14938 502 aa25.7■■□□□ 1.7
USP40-207ENST00000450940 USP16Q9Y5T5 823 aa25.7■■□□□ 1.7
USP40-207ENST00000450940 A1BGP04217 495 aa25.69■■□□□ 1.7
USP40-207ENST00000450940 SNRPA1P09661 255 aaKnown RBP25.69■■□□□ 1.7
USP40-207ENST00000450940 DPEP1P16444 411 aa25.69■■□□□ 1.7
USP40-207ENST00000450940 KCNA3P22001 575 aa25.69■■□□□ 1.7
USP40-207ENST00000450940 SCN7AQ01118 1682 aa25.68■■□□□ 1.7
USP40-207ENST00000450940 KDM3BQ7LBC6 1761 aa25.68■■□□□ 1.7
USP40-207ENST00000450940 WWC3Q9ULE0 1092 aa25.67■■□□□ 1.7
USP40-207ENST00000450940 MAPK8IP3Q9UPT6 1336 aa25.66■■□□□ 1.7
USP40-207ENST00000450940 PRAMEF22A3QJZ6 481 aa25.66■■□□□ 1.7
USP40-207ENST00000450940 PNISRQ8TF01 805 aaKnown RBP25.66■■□□□ 1.7
USP40-207ENST00000450940 ARFGEF1Q9Y6D6 1849 aa25.65■■□□□ 1.7
USP40-207ENST00000450940 SERPINB2P05120 415 aa25.63■■□□□ 1.69
USP40-207ENST00000450940 ZEB1P37275 1124 aaPredicted RBP25.63■■□□□ 1.69
USP40-207ENST00000450940 MIS18AQ9NYP9 233 aa25.63■■□□□ 1.69
USP40-207ENST00000450940 TBC1D2BQ9UPU7 963 aa25.63■■□□□ 1.69
USP40-207ENST00000450940 BCORQ6W2J9 1755 aa25.63■■□□□ 1.69
USP40-207ENST00000450940 LAMB4A4D0S4 1761 aa25.62■■□□□ 1.69
USP40-207ENST00000450940 ADCY9O60503 1353 aa25.62■■□□□ 1.69
USP40-207ENST00000450940 PRKRIP1Q9H875 184 aaPredicted RBP25.62■■□□□ 1.69
USP40-207ENST00000450940 PIM2Q9P1W9 311 aa25.62■■□□□ 1.69
USP40-207ENST00000450940 BCS1LQ9Y276 419 aa25.62■■□□□ 1.69
USP40-207ENST00000450940 CAMTA2O94983 1202 aa25.61■■□□□ 1.69
USP40-207ENST00000450940 TBC1D9BQ66K14 1250 aa25.6■■□□□ 1.69
USP40-207ENST00000450940 THUMPD2Q9BTF0 503 aaKnown RBP25.6■■□□□ 1.69
USP40-207ENST00000450940 ZNF330Q9Y3S2 320 aaPredicted RBP25.6■■□□□ 1.69
USP40-207ENST00000450940 NBPF26B4DH59 902 aa25.59■■□□□ 1.69
USP40-207ENST00000450940 NBPF10Q6P3W6 841 aaKnown RBP25.59■■□□□ 1.69
USP40-207ENST00000450940 NPM2Q86SE8 214 aaKnown RBP25.59■■□□□ 1.69
USP40-207ENST00000450940 NBPF15Q8N660 670 aa25.59■■□□□ 1.69
USP40-207ENST00000450940 DLEC1Q9Y238 1755 aa25.59■■□□□ 1.69
USP40-207ENST00000450940 CHRNA5P30532 468 aa25.58■■□□□ 1.69
USP40-207ENST00000450940 TMPOP42166 694 aaKnown RBP25.58■■□□□ 1.69
USP40-207ENST00000450940 RIPK4P57078 832 aa25.58■■□□□ 1.69
USP40-207ENST00000450940 EIF4A1P60842 406 aaKnown RBP25.58■■□□□ 1.69
USP40-207ENST00000450940 DZIP3Q86Y13 1208 aaKnown RBP25.58■■□□□ 1.69
USP40-207ENST00000450940 RGL2O15211 777 aa25.57■■□□□ 1.68
USP40-207ENST00000450940 GIGYF1O75420 1035 aaPredicted RBP25.57■■□□□ 1.68
USP40-207ENST00000450940 PIP4K2AP48426 406 aaPredicted RBP25.57■■□□□ 1.68
USP40-207ENST00000450940 DALRD3Q5D0E6 543 aaKnown RBP25.57■■□□□ 1.68
USP40-207ENST00000450940 BICDL1Q6ZP65 573 aa25.57■■□□□ 1.68
USP40-207ENST00000450940 ATP10DQ9P241 1426 aa25.56■■□□□ 1.68
USP40-207ENST00000450940 CLEC4GQ6UXB4 293 aa25.56■■□□□ 1.68
USP40-207ENST00000450940 ANKRD31Q8N7Z5 1873 aa25.55■■□□□ 1.68
USP40-207ENST00000450940 BABAM1Q9NWV8 329 aa25.55■■□□□ 1.68
USP40-207ENST00000450940 CARMIL3Q8ND23 1372 aa25.55■■□□□ 1.68
USP40-207ENST00000450940 LMOD3Q0VAK6 560 aa25.54■■□□□ 1.68
USP40-207ENST00000450940 WDR43Q15061 677 aaKnown RBP eCLIP25.53■■□□□ 1.68
USP40-207ENST00000450940 ARHGAP27Q6ZUM4 889 aa25.53■■□□□ 1.68
USP40-207ENST00000450940 RUNDC1Q96C34 613 aa25.53■■□□□ 1.68
USP40-207ENST00000450940 SETDB2Q96T68 719 aa25.53■■□□□ 1.68
USP40-207ENST00000450940 ADAMTS8Q9UP79 889 aa25.53■■□□□ 1.68
USP40-207ENST00000450940 PRR5LQ6MZQ0 368 aa25.51■■□□□ 1.67
USP40-207ENST00000450940 BRIP1Q9BX63 1249 aa25.51■■□□□ 1.67
USP40-207ENST00000450940 PDZRN3Q9UPQ7 1066 aa25.51■■□□□ 1.67
USP40-207ENST00000450940 CCDC146Q8IYE0 955 aa25.5■■□□□ 1.67
USP40-207ENST00000450940 C2CD5Q86YS7 1000 aa25.49■■□□□ 1.67
USP40-207ENST00000450940 TSPYL4Q9UJ04 414 aa25.49■■□□□ 1.67
USP40-207ENST00000450940 ZNF652Q9Y2D9 606 aa25.49■■□□□ 1.67
USP40-207ENST00000450940 H0YIN7 160 aa25.48■■□□□ 1.67
USP40-207ENST00000450940 C1QTNF8P60827 252 aa25.48■■□□□ 1.67
USP40-207ENST00000450940 TRIM35Q9UPQ4 493 aa25.48■■□□□ 1.67
USP40-207ENST00000450940 SBF1O95248 1867 aa25.48■■□□□ 1.67
USP40-207ENST00000450940 PDE6BP35913 854 aa25.47■■□□□ 1.67
USP40-207ENST00000450940 RRP7AQ9Y3A4 280 aaKnown RBP25.47■■□□□ 1.67
USP40-207ENST00000450940 ERBB4Q15303 1308 aa25.46■■□□□ 1.67
USP40-207ENST00000450940 TTLL6Q8N841 843 aa25.46■■□□□ 1.67
USP40-207ENST00000450940 CNBD1Q8NA66 436 aa25.46■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms