RNA–Protein interactions for RNA: ENST00000449058.6

TOM1-210, Transcript of target of myb1 membrane trafficking protein, human

APPRIS P3 TSL 1 (best) BASIC

Gene TOM1, Length 2,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TOM1-210	ENST00000449058	PXDN	Q92626	1479 aa		20.67	■□□□□ 0.9
TOM1-210	ENST00000449058	BTBD11	A6QL63	1104 aa		20.67	■□□□□ 0.9
TOM1-210	ENST00000449058	MCC	P23508	829 aa		20.67	■□□□□ 0.9
TOM1-210	ENST00000449058	MCM2	P49736	904 aa		20.67	■□□□□ 0.9
TOM1-210	ENST00000449058	NEK4	P51957	841 aa		20.67	■□□□□ 0.9
TOM1-210	ENST00000449058	RRAGD	Q9NQL2	400 aa	Predicted RBP	20.67	■□□□□ 0.9
TOM1-210	ENST00000449058	SIPA1L3	O60292	1781 aa	Predicted RBP	20.67	■□□□□ 0.9
TOM1-210	ENST00000449058	TRPM3	Q9HCF6	1732 aa	Predicted RBP	20.67	■□□□□ 0.9
TOM1-210	ENST00000449058	ADCY9	O60503	1353 aa		20.66	■□□□□ 0.9
TOM1-210	ENST00000449058	PI4KAP2	A4QPH2	592 aa		20.66	■□□□□ 0.9
TOM1-210	ENST00000449058	EPB41L2	O43491	1005 aa	Known RBP	20.66	■□□□□ 0.9
TOM1-210	ENST00000449058	SURF6	O75683	361 aa	Known RBP	20.66	■□□□□ 0.9
TOM1-210	ENST00000449058	GC	P02774	474 aa		20.66	■□□□□ 0.9
TOM1-210	ENST00000449058	NBPF7	P0C2Y1	421 aa	Predicted RBP	20.66	■□□□□ 0.9
TOM1-210	ENST00000449058	PI4KAP1	Q8N8J0	262 aa		20.66	■□□□□ 0.9
TOM1-210	ENST00000449058	ZBTB7C	A1YPR0	619 aa		20.66	■□□□□ 0.9
TOM1-210	ENST00000449058	RHPN1	Q8TCX5	695 aa		20.66	■□□□□ 0.9
TOM1-210	ENST00000449058	PALD1	Q9ULE6	856 aa		20.66	■□□□□ 0.9
TOM1-210	ENST00000449058	ZDHHC9	Q9Y397	364 aa		20.66	■□□□□ 0.9
TOM1-210	ENST00000449058	ADAMTSL3	P82987	1691 aa		20.65	■□□□□ 0.9
TOM1-210	ENST00000449058	MPRIP	Q6WCQ1	1025 aa		20.65	■□□□□ 0.9
TOM1-210	ENST00000449058	ANO2	Q9NQ90	1003 aa		20.65	■□□□□ 0.9
TOM1-210	ENST00000449058	DDX49	Q9Y6V7	483 aa	Known RBP	20.65	■□□□□ 0.9
TOM1-210	ENST00000449058	CRYBG1	Q9Y4K1	1723 aa		20.65	■□□□□ 0.9
TOM1-210	ENST00000449058	RNMT	O43148	476 aa	Known RBP	20.65	■□□□□ 0.9
TOM1-210	ENST00000449058	SRGAP3	O43295	1099 aa		20.65	■□□□□ 0.9
TOM1-210	ENST00000449058	MCTP1	Q6DN14	999 aa		20.65	■□□□□ 0.9
TOM1-210	ENST00000449058	NUTM1	Q86Y26	1132 aa		20.65	■□□□□ 0.9
TOM1-210	ENST00000449058	TMX3	Q96JJ7	454 aa		20.65	■□□□□ 0.9
TOM1-210	ENST00000449058	NPHP4	O75161	1426 aa	Predicted RBP	20.64	■□□□□ 0.9
TOM1-210	ENST00000449058	HEG1	Q9ULI3	1381 aa		20.64	■□□□□ 0.9
TOM1-210	ENST00000449058	PI4K2B	Q8TCG2	481 aa		20.64	■□□□□ 0.89
TOM1-210	ENST00000449058	KIF1BP	Q96EK5	621 aa		20.64	■□□□□ 0.89
TOM1-210	ENST00000449058	LMBRD1	Q9NUN5	540 aa		20.64	■□□□□ 0.89
TOM1-210	ENST00000449058	ADAMTS7	Q9UKP4	1686 aa		20.64	■□□□□ 0.89
TOM1-210	ENST00000449058	LMTK3	Q96Q04	1460 aa		20.64	■□□□□ 0.89
TOM1-210	ENST00000449058	ORAI2	Q96SN7	254 aa		20.64	■□□□□ 0.89
TOM1-210	ENST00000449058	CUL4A	Q13619	759 aa		20.63	■□□□□ 0.89
TOM1-210	ENST00000449058	DBF4	Q9UBU7	674 aa	Predicted RBP	20.63	■□□□□ 0.89
TOM1-210	ENST00000449058	C1orf141	Q5JVX7	400 aa		20.62	■□□□□ 0.89
TOM1-210	ENST00000449058	ANXA1	P04083	346 aa		20.61	■□□□□ 0.89
TOM1-210	ENST00000449058	MTX1	Q13505	466 aa		20.61	■□□□□ 0.89
TOM1-210	ENST00000449058	IL25	Q9H293	177 aa		20.61	■□□□□ 0.89
TOM1-210	ENST00000449058	HSP90AB4P	Q58FF6	505 aa		20.61	■□□□□ 0.89
TOM1-210	ENST00000449058	ANKRD24	Q8TF21	1146 aa		20.61	■□□□□ 0.89
TOM1-210	ENST00000449058	USP42	Q9H9J4	1324 aa	Known RBP	20.61	■□□□□ 0.89
TOM1-210	ENST00000449058	GIGYF1	O75420	1035 aa	Predicted RBP	20.6	■□□□□ 0.89
TOM1-210	ENST00000449058	RGPD5	Q99666	1765 aa		20.6	■□□□□ 0.89
TOM1-210	ENST00000449058	HSPA4	P34932	840 aa		20.59	■□□□□ 0.89
TOM1-210	ENST00000449058	INTS4	Q96HW7	963 aa	Known RBP	20.59	■□□□□ 0.89
TOM1-210	ENST00000449058	KIF1A	Q12756	1690 aa		20.59	■□□□□ 0.89
TOM1-210	ENST00000449058	ALDH1L1	O75891	902 aa		20.59	■□□□□ 0.89
TOM1-210	ENST00000449058	XPC	Q01831	940 aa	Predicted RBP	20.59	■□□□□ 0.89
TOM1-210	ENST00000449058	ZNF445	P59923	1031 aa		20.58	■□□□□ 0.89
TOM1-210	ENST00000449058	MST1R	Q04912	1400 aa		20.58	■□□□□ 0.88
TOM1-210	ENST00000449058	SGSM2	O43147	1006 aa		20.57	■□□□□ 0.88
TOM1-210	ENST00000449058	PROSER3	Q2NL68	480 aa		20.57	■□□□□ 0.88
TOM1-210	ENST00000449058	KSR2	Q6VAB6	950 aa		20.57	■□□□□ 0.88
TOM1-210	ENST00000449058	AXIN2	Q9Y2T1	843 aa		20.57	■□□□□ 0.88
TOM1-210	ENST00000449058	MAP3K2	Q9Y2U5	619 aa		20.57	■□□□□ 0.88
TOM1-210	ENST00000449058	TTC41P	Q6P2S7	1318 aa		20.56	■□□□□ 0.88
TOM1-210	ENST00000449058	RAD50	Q92878	1312 aa		20.56	■□□□□ 0.88
TOM1-210	ENST00000449058	BRD1	O95696	1058 aa		20.56	■□□□□ 0.88
TOM1-210	ENST00000449058	MAP4K4	O95819	1239 aa	Predicted RBP	20.56	■□□□□ 0.88
TOM1-210	ENST00000449058	CNTROB	Q8N137	903 aa		20.56	■□□□□ 0.88
TOM1-210	ENST00000449058	ALS2	Q96Q42	1657 aa		20.55	■□□□□ 0.88
TOM1-210	ENST00000449058	PRPF40A	O75400	957 aa	Known RBP	20.54	■□□□□ 0.88
TOM1-210	ENST00000449058	ANO8	Q9HCE9	1232 aa	Predicted RBP	20.54	■□□□□ 0.88
TOM1-210	ENST00000449058	CAVIN1	Q6NZI2	390 aa	Known RBP	20.54	■□□□□ 0.88
TOM1-210	ENST00000449058	KRT28	Q7Z3Y7	464 aa		20.54	■□□□□ 0.88
TOM1-210	ENST00000449058	UPF3B	Q9BZI7	483 aa	Known RBP	20.54	■□□□□ 0.88
TOM1-210	ENST00000449058	HYPK	Q9NX55	129 aa		20.54	■□□□□ 0.88
TOM1-210	ENST00000449058	ZSCAN23	Q3MJ62	389 aa		20.53	■□□□□ 0.88
TOM1-210	ENST00000449058	GPT2	Q8TD30	523 aa		20.53	■□□□□ 0.88
TOM1-210	ENST00000449058	LSG1	Q9H089	658 aa	Known RBP	20.53	■□□□□ 0.88
TOM1-210	ENST00000449058	HDAC5	Q9UQL6	1122 aa		20.53	■□□□□ 0.88
TOM1-210	ENST00000449058	SCN11A	Q9UI33	1791 aa		20.53	■□□□□ 0.88
TOM1-210	ENST00000449058	C1orf167	Q5SNV9	1468 aa		20.53	■□□□□ 0.88
TOM1-210	ENST00000449058	PRAMEF22	A3QJZ6	481 aa		20.53	■□□□□ 0.88
TOM1-210	ENST00000449058	GLRX3	O76003	335 aa	Known RBP	20.53	■□□□□ 0.88
TOM1-210	ENST00000449058	CLCN1	P35523	988 aa		20.53	■□□□□ 0.88
TOM1-210	ENST00000449058	LMOD2	Q6P5Q4	547 aa		20.53	■□□□□ 0.88
TOM1-210	ENST00000449058	C9orf78	Q9NZ63	289 aa	Predicted RBP	20.53	■□□□□ 0.88
TOM1-210	ENST00000449058	UTY	O14607	1347 aa		20.52	■□□□□ 0.88
TOM1-210	ENST00000449058	ERBB3	P21860	1342 aa		20.52	■□□□□ 0.88
TOM1-210	ENST00000449058	PLEKHG5	O94827	1062 aa		20.52	■□□□□ 0.88
TOM1-210	ENST00000449058	NCL	P19338	710 aa	Known RBP	20.51	■□□□□ 0.87
TOM1-210	ENST00000449058	NASP	P49321	788 aa	Predicted RBP	20.51	■□□□□ 0.87
TOM1-210	ENST00000449058	LINS1	Q8NG48	757 aa		20.51	■□□□□ 0.87
TOM1-210	ENST00000449058	OS9	Q13438	667 aa	Predicted RBP	20.51	■□□□□ 0.87
TOM1-210	ENST00000449058	ERC1	Q8IUD2	1116 aa		20.51	■□□□□ 0.87
TOM1-210	ENST00000449058	CLASRP	Q8N2M8	674 aa	Known RBP	20.51	■□□□□ 0.87
TOM1-210	ENST00000449058	PPP1R9B	Q96SB3	815 aa		20.51	■□□□□ 0.87
TOM1-210	ENST00000449058	DDX21	Q9NR30	783 aa	Known RBP eCLIP	20.51	■□□□□ 0.87
TOM1-210	ENST00000449058	SNX14	Q9Y5W7	946 aa		20.51	■□□□□ 0.87
TOM1-210	ENST00000449058	C5	P01031	1676 aa		20.51	■□□□□ 0.87
TOM1-210	ENST00000449058	CWF19L2	Q2TBE0	894 aa	Known RBP	20.5	■□□□□ 0.87
TOM1-210	ENST00000449058	NOL8	Q76FK4	1167 aa	Known RBP	20.5	■□□□□ 0.87
TOM1-210	ENST00000449058	CHAMP1	Q96JM3	812 aa		20.5	■□□□□ 0.87
TOM1-210	ENST00000449058	CCDC173	Q0VFZ6	552 aa		20.49	■□□□□ 0.87

Retrieved 100 of 20,778 RNA–protein pairs in 93.3 ms