RNA–Protein interactions for RNA: ENST00000443727.1

LRCH3-208, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 4

Gene LRCH3, Length 611 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-208ENST00000443727 UBR2Q8IWV8 1755 aa26.63■■□□□ 1.85
LRCH3-208ENST00000443727 COL15A1P39059 1388 aa26.62■■□□□ 1.85
LRCH3-208ENST00000443727 DCTN1Q14203 1278 aa26.62■■□□□ 1.85
LRCH3-208ENST00000443727 USPL1Q5W0Q7 1092 aa26.62■■□□□ 1.85
LRCH3-208ENST00000443727 MAPK8IP3Q9UPT6 1336 aa26.62■■□□□ 1.85
LRCH3-208ENST00000443727 KCNQ3O43525 872 aa26.61■■□□□ 1.85
LRCH3-208ENST00000443727 SIPA1L3O60292 1781 aaPredicted RBP26.61■■□□□ 1.85
LRCH3-208ENST00000443727 CHD4Q14839 1912 aa26.61■■□□□ 1.85
LRCH3-208ENST00000443727 NARFQ9UHQ1 456 aa26.6■■□□□ 1.85
LRCH3-208ENST00000443727 GOLGB1Q14789 3259 aaKnown RBP26.59■■□□□ 1.85
LRCH3-208ENST00000443727 TGFB2P61812 414 aa26.59■■□□□ 1.85
LRCH3-208ENST00000443727 NPM2Q86SE8 214 aaKnown RBP26.59■■□□□ 1.85
LRCH3-208ENST00000443727 ZNF330Q9Y3S2 320 aaPredicted RBP26.59■■□□□ 1.85
LRCH3-208ENST00000443727 A0A087WZG4 1122 aa26.58■■□□□ 1.85
LRCH3-208ENST00000443727 ZNF784Q8NCA9 323 aaPredicted RBP26.58■■□□□ 1.85
LRCH3-208ENST00000443727 MYBBP1AQ9BQG0 1328 aaKnown RBP26.58■■□□□ 1.85
LRCH3-208ENST00000443727 C10orf71Q711Q0 1435 aa26.57■■□□□ 1.84
LRCH3-208ENST00000443727 DDR1Q08345 913 aa26.57■■□□□ 1.84
LRCH3-208ENST00000443727 PLEKHF1Q96S99 279 aa26.57■■□□□ 1.84
LRCH3-208ENST00000443727 A0A0G2JLW4 131 aa26.56■■□□□ 1.84
LRCH3-208ENST00000443727 ZEB1P37275 1124 aaPredicted RBP26.56■■□□□ 1.84
LRCH3-208ENST00000443727 TAF7Q15545 349 aaPredicted RBP26.56■■□□□ 1.84
LRCH3-208ENST00000443727 NFE2L2Q16236 605 aa26.56■■□□□ 1.84
LRCH3-208ENST00000443727 EIF5P55010 431 aaKnown RBP26.55■■□□□ 1.84
LRCH3-208ENST00000443727 SNRPA1P09661 255 aaKnown RBP26.54■■□□□ 1.84
LRCH3-208ENST00000443727 PXDNLA1KZ92 1463 aa26.54■■□□□ 1.84
LRCH3-208ENST00000443727 POLRMTO00411 1230 aaKnown RBP26.53■■□□□ 1.84
LRCH3-208ENST00000443727 A1BGP04217 495 aa26.53■■□□□ 1.84
LRCH3-208ENST00000443727 TM4SF1P30408 202 aa26.53■■□□□ 1.84
LRCH3-208ENST00000443727 DPEP1P16444 411 aa26.52■■□□□ 1.84
LRCH3-208ENST00000443727 IL6STP40189 918 aaPredicted RBP26.52■■□□□ 1.84
LRCH3-208ENST00000443727 NFIXQ14938 502 aa26.52■■□□□ 1.84
LRCH3-208ENST00000443727 MIS18AQ9NYP9 233 aa26.52■■□□□ 1.84
LRCH3-208ENST00000443727 BCS1LQ9Y276 419 aa26.51■■□□□ 1.83
LRCH3-208ENST00000443727 USP16Q9Y5T5 823 aa26.51■■□□□ 1.83
LRCH3-208ENST00000443727 PNISRQ8TF01 805 aaKnown RBP26.5■■□□□ 1.83
LRCH3-208ENST00000443727 BCL2L12Q9HB09 334 aa26.5■■□□□ 1.83
LRCH3-208ENST00000443727 TBC1D2BQ9UPU7 963 aa26.5■■□□□ 1.83
LRCH3-208ENST00000443727 KIF13BQ9NQT8 1826 aa26.5■■□□□ 1.83
LRCH3-208ENST00000443727 BICDL1Q6ZP65 573 aa26.49■■□□□ 1.83
LRCH3-208ENST00000443727 PRAMEF22A3QJZ6 481 aa26.48■■□□□ 1.83
LRCH3-208ENST00000443727 WDR43Q15061 677 aaKnown RBP eCLIP26.48■■□□□ 1.83
LRCH3-208ENST00000443727 THUMPD2Q9BTF0 503 aaKnown RBP26.48■■□□□ 1.83
LRCH3-208ENST00000443727 N4BP2Q86UW6 1770 aaPredicted RBP26.46■■□□□ 1.83
LRCH3-208ENST00000443727 SERPINB2P05120 415 aa26.46■■□□□ 1.83
LRCH3-208ENST00000443727 RIPK4P57078 832 aa26.46■■□□□ 1.83
LRCH3-208ENST00000443727 PIP4K2AP48426 406 aaPredicted RBP26.45■■□□□ 1.82
LRCH3-208ENST00000443727 PIM2Q9P1W9 311 aa26.45■■□□□ 1.82
LRCH3-208ENST00000443727 DLG5Q8TDM6 1919 aa26.44■■□□□ 1.82
LRCH3-208ENST00000443727 DZIP3Q86Y13 1208 aaKnown RBP26.44■■□□□ 1.82
LRCH3-208ENST00000443727 PRKRIP1Q9H875 184 aaPredicted RBP26.44■■□□□ 1.82
LRCH3-208ENST00000443727 CHRNA5P30532 468 aa26.43■■□□□ 1.82
LRCH3-208ENST00000443727 CCDC146Q8IYE0 955 aa26.43■■□□□ 1.82
LRCH3-208ENST00000443727 KIAA1551Q9HCM1 1747 aa26.42■■□□□ 1.82
LRCH3-208ENST00000443727 KCNA3P22001 575 aa26.42■■□□□ 1.82
LRCH3-208ENST00000443727 LMOD3Q0VAK6 560 aa26.42■■□□□ 1.82
LRCH3-208ENST00000443727 DALRD3Q5D0E6 543 aaKnown RBP26.42■■□□□ 1.82
LRCH3-208ENST00000443727 TBC1D9BQ66K14 1250 aa26.42■■□□□ 1.82
LRCH3-208ENST00000443727 ARHGAP27Q6ZUM4 889 aa26.42■■□□□ 1.82
LRCH3-208ENST00000443727 NPHP1O15259 732 aa26.4■■□□□ 1.82
LRCH3-208ENST00000443727 CAMTA2O94983 1202 aa26.4■■□□□ 1.82
LRCH3-208ENST00000443727 TMPOP42166 694 aaKnown RBP26.4■■□□□ 1.82
LRCH3-208ENST00000443727 RRP7AQ9Y3A4 280 aaKnown RBP26.4■■□□□ 1.82
LRCH3-208ENST00000443727 NEUROD2Q15784 382 aa26.39■■□□□ 1.82
LRCH3-208ENST00000443727 SETDB2Q96T68 719 aa26.39■■□□□ 1.82
LRCH3-208ENST00000443727 CARMIL3Q8ND23 1372 aa26.38■■□□□ 1.81
LRCH3-208ENST00000443727 EIF4A1P60842 406 aaKnown RBP26.38■■□□□ 1.81
LRCH3-208ENST00000443727 RUNDC1Q96C34 613 aa26.38■■□□□ 1.81
LRCH3-208ENST00000443727 TSPYL4Q9UJ04 414 aa26.38■■□□□ 1.81
LRCH3-208ENST00000443727 NBPF26B4DH59 902 aa26.37■■□□□ 1.81
LRCH3-208ENST00000443727 GIGYF1O75420 1035 aaPredicted RBP26.37■■□□□ 1.81
LRCH3-208ENST00000443727 NBPF10Q6P3W6 841 aaKnown RBP26.37■■□□□ 1.81
LRCH3-208ENST00000443727 NBPF15Q8N660 670 aa26.37■■□□□ 1.81
LRCH3-208ENST00000443727 ZNF652Q9Y2D9 606 aa26.37■■□□□ 1.81
LRCH3-208ENST00000443727 ATP10DQ9P241 1426 aa26.37■■□□□ 1.81
LRCH3-208ENST00000443727 SCN7AQ01118 1682 aa26.37■■□□□ 1.81
LRCH3-208ENST00000443727 ADAMTS8Q9UP79 889 aa26.36■■□□□ 1.81
LRCH3-208ENST00000443727 C2CD5Q86YS7 1000 aa26.35■■□□□ 1.81
LRCH3-208ENST00000443727 AFDNP55196 1824 aaKnown RBP26.35■■□□□ 1.81
LRCH3-208ENST00000443727 H0YIN7 160 aa26.34■■□□□ 1.81
LRCH3-208ENST00000443727 KDM3BQ7LBC6 1761 aa26.33■■□□□ 1.81
LRCH3-208ENST00000443727 CLEC4GQ6UXB4 293 aa26.33■■□□□ 1.81
LRCH3-208ENST00000443727 NGEFQ8N5V2 710 aa26.33■■□□□ 1.81
LRCH3-208ENST00000443727 CNBD1Q8NA66 436 aa26.33■■□□□ 1.81
LRCH3-208ENST00000443727 ZNF526Q8TF50 670 aaPredicted RBP26.33■■□□□ 1.81
LRCH3-208ENST00000443727 NRXN2Q9P2S2 1712 aa26.33■■□□□ 1.81
LRCH3-208ENST00000443727 PRR5LQ6MZQ0 368 aa26.32■■□□□ 1.8
LRCH3-208ENST00000443727 CCDC24Q8N4L8 307 aa26.32■■□□□ 1.8
LRCH3-208ENST00000443727 GPBP1L1Q9HC44 474 aaPredicted RBP26.32■■□□□ 1.8
LRCH3-208ENST00000443727 PDE6BP35913 854 aa26.31■■□□□ 1.8
LRCH3-208ENST00000443727 ST5P78524 1137 aa26.31■■□□□ 1.8
LRCH3-208ENST00000443727 BRIP1Q9BX63 1249 aa26.31■■□□□ 1.8
LRCH3-208ENST00000443727 BABAM1Q9NWV8 329 aa26.31■■□□□ 1.8
LRCH3-208ENST00000443727 BRCA1P38398 1863 aaKnown RBP26.31■■□□□ 1.8
LRCH3-208ENST00000443727 ADCY9O60503 1353 aa26.31■■□□□ 1.8
LRCH3-208ENST00000443727 NBPF5PQ86XG9 351 aaPredicted RBP26.3■■□□□ 1.8
LRCH3-208ENST00000443727 TTLL6Q8N841 843 aa26.3■■□□□ 1.8
LRCH3-208ENST00000443727 LAMB4A4D0S4 1761 aa26.29■■□□□ 1.8
LRCH3-208ENST00000443727 MYL6BP14649 208 aa26.29■■□□□ 1.8
LRCH3-208ENST00000443727 PDZRN3Q9UPQ7 1066 aa26.29■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 100.8 ms