RNA–Protein interactions for RNA: ENST00000442054.5

CDC42BPA-208, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 1 (best)

Gene CDC42BPA, Length 3,786 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-208ENST00000442054 ZNF526Q8TF50 670 aaPredicted RBP9.29□□□□□ -0.92
CDC42BPA-208ENST00000442054 MAP2P11137 1827 aaKnown RBP9.29□□□□□ -0.92
CDC42BPA-208ENST00000442054 GPTP24298 496 aa9.28□□□□□ -0.92
CDC42BPA-208ENST00000442054 ST5P78524 1137 aa9.28□□□□□ -0.92
CDC42BPA-208ENST00000442054 PTF1AQ7RTS3 328 aa9.28□□□□□ -0.92
CDC42BPA-208ENST00000442054 WDR63Q8IWG1 891 aa9.28□□□□□ -0.92
CDC42BPA-208ENST00000442054 SLC16A10Q8TF71 515 aa9.28□□□□□ -0.92
CDC42BPA-208ENST00000442054 ZBTB3Q9H5J0 574 aa9.28□□□□□ -0.92
CDC42BPA-208ENST00000442054 ARHGAP27Q6ZUM4 889 aa9.28□□□□□ -0.92
CDC42BPA-208ENST00000442054 TNNQ9UQP3 1299 aa9.28□□□□□ -0.92
CDC42BPA-208ENST00000442054 MMP10P09238 476 aa9.28□□□□□ -0.92
CDC42BPA-208ENST00000442054 DZIP3Q86Y13 1208 aaKnown RBP9.28□□□□□ -0.92
CDC42BPA-208ENST00000442054 ANTXR1Q9H6X2 564 aa9.28□□□□□ -0.92
CDC42BPA-208ENST00000442054 TUBGCP6Q96RT7 1819 aa9.28□□□□□ -0.92
CDC42BPA-208ENST00000442054 ZNF790Q6PG37 636 aa9.27□□□□□ -0.92
CDC42BPA-208ENST00000442054 PHACTR3Q96KR7 559 aa9.27□□□□□ -0.92
CDC42BPA-208ENST00000442054 RGPD1P0DJD0 1748 aa9.27□□□□□ -0.92
CDC42BPA-208ENST00000442054 TOPAZ1Q8N9V7 1692 aa9.27□□□□□ -0.92
CDC42BPA-208ENST00000442054 CAMTA1Q9Y6Y1 1673 aa9.27□□□□□ -0.92
CDC42BPA-208ENST00000442054 IGSF1Q8N6C5 1336 aa9.27□□□□□ -0.93
CDC42BPA-208ENST00000442054 FMN2Q9NZ56 1722 aa9.27□□□□□ -0.93
CDC42BPA-208ENST00000442054 TMPOP42166 694 aaKnown RBP9.27□□□□□ -0.93
CDC42BPA-208ENST00000442054 PCDHB15Q9Y5E8 787 aa9.27□□□□□ -0.93
CDC42BPA-208ENST00000442054 CAMKK2Q96RR4 588 aa9.26□□□□□ -0.93
CDC42BPA-208ENST00000442054 NIP7Q9Y221 180 aaKnown RBP eCLIP9.26□□□□□ -0.93
CDC42BPA-208ENST00000442054 MAP3K5Q99683 1374 aa9.26□□□□□ -0.93
CDC42BPA-208ENST00000442054 ZBTB22O15209 634 aa9.26□□□□□ -0.93
CDC42BPA-208ENST00000442054 CRKLP46109 303 aaKnown RBP9.26□□□□□ -0.93
CDC42BPA-208ENST00000442054 RPGRQ92834 1020 aaKnown RBP9.26□□□□□ -0.93
CDC42BPA-208ENST00000442054 FRAT1Q92837 279 aaPredicted RBP9.26□□□□□ -0.93
CDC42BPA-208ENST00000442054 ZNF496Q96IT1 587 aaPredicted RBP9.26□□□□□ -0.93
CDC42BPA-208ENST00000442054 TAOK2Q9UL54 1235 aa9.26□□□□□ -0.93
CDC42BPA-208ENST00000442054 A1BGP04217 495 aa9.26□□□□□ -0.93
CDC42BPA-208ENST00000442054 HSP90B1P14625 803 aaKnown RBP9.26□□□□□ -0.93
CDC42BPA-208ENST00000442054 FKBP5Q13451 457 aaPredicted RBP9.26□□□□□ -0.93
CDC42BPA-208ENST00000442054 TPTE2Q6XPS3 522 aa9.26□□□□□ -0.93
CDC42BPA-208ENST00000442054 CCDC24Q8N4L8 307 aa9.26□□□□□ -0.93
CDC42BPA-208ENST00000442054 CLUAP1Q96AJ1 413 aa9.26□□□□□ -0.93
CDC42BPA-208ENST00000442054 CDK12Q9NYV4 1490 aaPredicted RBP9.25□□□□□ -0.93
CDC42BPA-208ENST00000442054 NFKBIBQ15653 356 aa9.25□□□□□ -0.93
CDC42BPA-208ENST00000442054 SMIM5Q71RC9 77 aa9.25□□□□□ -0.93
CDC42BPA-208ENST00000442054 ATG3Q9NT62 314 aa9.25□□□□□ -0.93
CDC42BPA-208ENST00000442054 TRIM35Q9UPQ4 493 aa9.25□□□□□ -0.93
CDC42BPA-208ENST00000442054 H0YIN7 160 aa9.25□□□□□ -0.93
CDC42BPA-208ENST00000442054 AAMPQ13685 434 aa9.25□□□□□ -0.93
CDC42BPA-208ENST00000442054 FBXW7Q969H0 707 aa9.25□□□□□ -0.93
CDC42BPA-208ENST00000442054 FRAT2O75474 233 aaPredicted RBP9.25□□□□□ -0.93
CDC42BPA-208ENST00000442054 USPL1Q5W0Q7 1092 aa9.25□□□□□ -0.93
CDC42BPA-208ENST00000442054 CNBD1Q8NA66 436 aa9.24□□□□□ -0.93
CDC42BPA-208ENST00000442054 DDRGK1Q96HY6 314 aa9.24□□□□□ -0.93
CDC42BPA-208ENST00000442054 YY1P25490 414 aa9.24□□□□□ -0.93
CDC42BPA-208ENST00000442054 CCDC30Q5VVM6 783 aa9.24□□□□□ -0.93
CDC42BPA-208ENST00000442054 PANK1Q8TE04 598 aa9.24□□□□□ -0.93
CDC42BPA-208ENST00000442054 ITSN1Q15811 1721 aa9.24□□□□□ -0.93
CDC42BPA-208ENST00000442054 KCNJ4P48050 445 aa9.24□□□□□ -0.93
CDC42BPA-208ENST00000442054 RPS6KA4O75676 772 aa9.23□□□□□ -0.93
CDC42BPA-208ENST00000442054 ANXA1P04083 346 aa9.23□□□□□ -0.93
CDC42BPA-208ENST00000442054 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.23□□□□□ -0.93
CDC42BPA-208ENST00000442054 GRIN3BO60391 1043 aa9.23□□□□□ -0.93
CDC42BPA-208ENST00000442054 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.23□□□□□ -0.93
CDC42BPA-208ENST00000442054 FHDC1Q9C0D6 1143 aaPredicted RBP9.23□□□□□ -0.93
CDC42BPA-208ENST00000442054 C9orf78Q9NZ63 289 aaPredicted RBP9.23□□□□□ -0.93
CDC42BPA-208ENST00000442054 TRMT112Q9UI30 125 aaKnown RBP9.23□□□□□ -0.93
CDC42BPA-208ENST00000442054 ZBTB1Q9Y2K1 713 aa9.23□□□□□ -0.93
CDC42BPA-208ENST00000442054 HTATSF1O43719 755 aaKnown RBP9.23□□□□□ -0.93
CDC42BPA-208ENST00000442054 ANO8Q9HCE9 1232 aaPredicted RBP9.23□□□□□ -0.93
CDC42BPA-208ENST00000442054 SRP68Q9UHB9 627 aaKnown RBP9.23□□□□□ -0.93
CDC42BPA-208ENST00000442054 NPM3O75607 178 aaKnown RBP9.22□□□□□ -0.93
CDC42BPA-208ENST00000442054 SSFA2P28290 1259 aa9.22□□□□□ -0.93
CDC42BPA-208ENST00000442054 HSP90AB3PQ58FF7 597 aa9.22□□□□□ -0.93
CDC42BPA-208ENST00000442054 PPP1R42Q7Z4L9 355 aa9.22□□□□□ -0.93
CDC42BPA-208ENST00000442054 FTSJ3Q8IY81 847 aaKnown RBP9.22□□□□□ -0.93
CDC42BPA-208ENST00000442054 RSPH6AQ9H0K4 717 aa9.22□□□□□ -0.93
CDC42BPA-208ENST00000442054 SLC4A3P48751 1232 aa9.22□□□□□ -0.93
CDC42BPA-208ENST00000442054 IL17REQ8NFR9 667 aa9.22□□□□□ -0.93
CDC42BPA-208ENST00000442054 MARF1Q9Y4F3 1742 aaKnown RBP9.22□□□□□ -0.93
CDC42BPA-208ENST00000442054 N4BP2Q86UW6 1770 aaPredicted RBP9.22□□□□□ -0.93
CDC42BPA-208ENST00000442054 OS9Q13438 667 aaPredicted RBP9.22□□□□□ -0.93
CDC42BPA-208ENST00000442054 COL23A1Q86Y22 540 aaPredicted RBP9.22□□□□□ -0.93
CDC42BPA-208ENST00000442054 ARHGEF1Q92888 912 aaKnown RBP9.22□□□□□ -0.93
CDC42BPA-208ENST00000442054 TNS2Q63HR2 1409 aa9.22□□□□□ -0.93
CDC42BPA-208ENST00000442054 CCDC85AQ96PX6 553 aaPredicted RBP9.21□□□□□ -0.93
CDC42BPA-208ENST00000442054 CLEC11AQ9Y240 323 aa9.21□□□□□ -0.93
CDC42BPA-208ENST00000442054 DDIT3P35638 169 aa9.21□□□□□ -0.94
CDC42BPA-208ENST00000442054 BRPF1P55201 1214 aaPredicted RBP9.21□□□□□ -0.94
CDC42BPA-208ENST00000442054 NLRP3Q96P20 1036 aa9.21□□□□□ -0.94
CDC42BPA-208ENST00000442054 SMC4Q9NTJ3 1288 aa9.21□□□□□ -0.94
CDC42BPA-208ENST00000442054 IL16Q14005 1332 aa9.21□□□□□ -0.94
CDC42BPA-208ENST00000442054 IL27Q8NEV9 243 aa9.21□□□□□ -0.94
CDC42BPA-208ENST00000442054 PEAK1Q9H792 1746 aa9.2□□□□□ -0.94
CDC42BPA-208ENST00000442054 PAXIP1Q6ZW49 1069 aaPredicted RBP9.2□□□□□ -0.94
CDC42BPA-208ENST00000442054 C2CD5Q86YS7 1000 aa9.2□□□□□ -0.94
CDC42BPA-208ENST00000442054 TBC1D32Q96NH3 1257 aa9.2□□□□□ -0.94
CDC42BPA-208ENST00000442054 COG6Q9Y2V7 657 aa9.2□□□□□ -0.94
CDC42BPA-208ENST00000442054 USP16Q9Y5T5 823 aa9.2□□□□□ -0.94
CDC42BPA-208ENST00000442054 RGPD8O14715 1765 aaPredicted RBP9.2□□□□□ -0.94
CDC42BPA-208ENST00000442054 SERPINB2P05120 415 aa9.2□□□□□ -0.94
CDC42BPA-208ENST00000442054 TWISTNBQ3B726 338 aaPredicted RBP9.2□□□□□ -0.94
CDC42BPA-208ENST00000442054 TSR2Q969E8 191 aaKnown RBP9.2□□□□□ -0.94
CDC42BPA-208ENST00000442054 CT47B1P0C2W7 299 aaPredicted RBP9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms