RNA–Protein interactions for RNA: ENST00000439475.1

MCF2L-216, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 5

Gene MCF2L, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-216ENST00000439475 ZBTB1Q9Y2K1 713 aa13.76□□□□□ -0.21
MCF2L-216ENST00000439475 PARP3Q9Y6F1 533 aa13.76□□□□□ -0.21
MCF2L-216ENST00000439475 SIPA1L3O60292 1781 aaPredicted RBP13.76□□□□□ -0.21
MCF2L-216ENST00000439475 CICQ96RK0 1608 aaPredicted RBP13.75□□□□□ -0.21
MCF2L-216ENST00000439475 DLG5Q8TDM6 1919 aa13.75□□□□□ -0.21
MCF2L-216ENST00000439475 KCNQ3O43525 872 aa13.75□□□□□ -0.21
MCF2L-216ENST00000439475 GYS1P13807 737 aa13.75□□□□□ -0.21
MCF2L-216ENST00000439475 CCDC146Q8IYE0 955 aa13.75□□□□□ -0.21
MCF2L-216ENST00000439475 TJP1Q07157 1748 aa13.75□□□□□ -0.21
MCF2L-216ENST00000439475 SOS1Q07889 1333 aaPredicted RBP13.74□□□□□ -0.21
MCF2L-216ENST00000439475 USP42Q9H9J4 1324 aaKnown RBP13.74□□□□□ -0.21
MCF2L-216ENST00000439475 MMP10P09238 476 aa13.74□□□□□ -0.21
MCF2L-216ENST00000439475 IL6STP40189 918 aaPredicted RBP13.74□□□□□ -0.21
MCF2L-216ENST00000439475 NEUROD2Q15784 382 aa13.74□□□□□ -0.21
MCF2L-216ENST00000439475 GPR162Q16538 588 aa13.74□□□□□ -0.21
MCF2L-216ENST00000439475 NARFQ9UHQ1 456 aa13.74□□□□□ -0.21
MCF2L-216ENST00000439475 UBR2Q8IWV8 1755 aa13.73□□□□□ -0.21
MCF2L-216ENST00000439475 BABAM1Q9NWV8 329 aa13.73□□□□□ -0.21
MCF2L-216ENST00000439475 ZNF330Q9Y3S2 320 aaPredicted RBP13.73□□□□□ -0.21
MCF2L-216ENST00000439475 USP16Q9Y5T5 823 aa13.73□□□□□ -0.21
MCF2L-216ENST00000439475 EIF5P55010 431 aaKnown RBP13.72□□□□□ -0.21
MCF2L-216ENST00000439475 USPL1Q5W0Q7 1092 aa13.72□□□□□ -0.21
MCF2L-216ENST00000439475 PELP1Q8IZL8 1130 aaKnown RBP13.72□□□□□ -0.21
MCF2L-216ENST00000439475 MIS18AQ9NYP9 233 aa13.72□□□□□ -0.21
MCF2L-216ENST00000439475 SRP68Q9UHB9 627 aaKnown RBP13.72□□□□□ -0.21
MCF2L-216ENST00000439475 TSPYL4Q9UJ04 414 aa13.72□□□□□ -0.21
MCF2L-216ENST00000439475 COL15A1P39059 1388 aa13.71□□□□□ -0.21
MCF2L-216ENST00000439475 A1BGP04217 495 aa13.71□□□□□ -0.21
MCF2L-216ENST00000439475 THUMPD2Q9BTF0 503 aaKnown RBP13.71□□□□□ -0.21
MCF2L-216ENST00000439475 RRP7AQ9Y3A4 280 aaKnown RBP13.71□□□□□ -0.21
MCF2L-216ENST00000439475 GRIN3BO60391 1043 aa13.7□□□□□ -0.22
MCF2L-216ENST00000439475 TGFB2P61812 414 aa13.7□□□□□ -0.22
MCF2L-216ENST00000439475 FKBP8Q14318 412 aa13.7□□□□□ -0.22
MCF2L-216ENST00000439475 NLGN2Q8NFZ4 835 aa13.7□□□□□ -0.22
MCF2L-216ENST00000439475 EIF4A1P60842 406 aaKnown RBP13.69□□□□□ -0.22
MCF2L-216ENST00000439475 MRS2Q9HD23 443 aa13.69□□□□□ -0.22
MCF2L-216ENST00000439475 GIGYF1O75420 1035 aaPredicted RBP13.68□□□□□ -0.22
MCF2L-216ENST00000439475 TM4SF1P30408 202 aa13.68□□□□□ -0.22
MCF2L-216ENST00000439475 CALD1Q05682 793 aaKnown RBP13.68□□□□□ -0.22
MCF2L-216ENST00000439475 TBC1D2BQ9UPU7 963 aa13.68□□□□□ -0.22
MCF2L-216ENST00000439475 LAS1LQ9Y4W2 734 aaKnown RBP13.68□□□□□ -0.22
MCF2L-216ENST00000439475 C4AP0C0L4 1744 aa13.67□□□□□ -0.22
MCF2L-216ENST00000439475 PRAMEF22A3QJZ6 481 aa13.67□□□□□ -0.22
MCF2L-216ENST00000439475 APAF1O14727 1248 aa13.67□□□□□ -0.22
MCF2L-216ENST00000439475 DZIP3Q86Y13 1208 aaKnown RBP13.67□□□□□ -0.22
MCF2L-216ENST00000439475 ZNF652Q9Y2D9 606 aa13.67□□□□□ -0.22
MCF2L-216ENST00000439475 YY1P25490 414 aa13.66□□□□□ -0.22
MCF2L-216ENST00000439475 NFIXQ14938 502 aa13.66□□□□□ -0.22
MCF2L-216ENST00000439475 TRIM35Q9UPQ4 493 aa13.66□□□□□ -0.22
MCF2L-216ENST00000439475 POLRMTO00411 1230 aaKnown RBP13.65□□□□□ -0.22
MCF2L-216ENST00000439475 SERPINB2P05120 415 aa13.65□□□□□ -0.22
MCF2L-216ENST00000439475 CLEC4GQ6UXB4 293 aa13.65□□□□□ -0.22
MCF2L-216ENST00000439475 BICDL1Q6ZP65 573 aa13.65□□□□□ -0.22
MCF2L-216ENST00000439475 SETDB2Q96T68 719 aa13.65□□□□□ -0.22
MCF2L-216ENST00000439475 BCL2L12Q9HB09 334 aa13.65□□□□□ -0.22
MCF2L-216ENST00000439475 KDM3BQ7LBC6 1761 aa13.64□□□□□ -0.23
MCF2L-216ENST00000439475 CHL1O00533 1208 aa13.64□□□□□ -0.23
MCF2L-216ENST00000439475 NPHP1O15259 732 aa13.64□□□□□ -0.23
MCF2L-216ENST00000439475 DDR1Q08345 913 aa13.64□□□□□ -0.23
MCF2L-216ENST00000439475 CCDC184Q52MB2 194 aa13.64□□□□□ -0.23
MCF2L-216ENST00000439475 CFAP44Q96MT7 982 aa13.64□□□□□ -0.23
MCF2L-216ENST00000439475 ERBB4Q15303 1308 aa13.64□□□□□ -0.23
MCF2L-216ENST00000439475 RGL2O15211 777 aa13.63□□□□□ -0.23
MCF2L-216ENST00000439475 CAMTA2O94983 1202 aa13.63□□□□□ -0.23
MCF2L-216ENST00000439475 EIF2S2P20042 333 aaKnown RBP13.63□□□□□ -0.23
MCF2L-216ENST00000439475 PIP4K2AP48426 406 aaPredicted RBP13.63□□□□□ -0.23
MCF2L-216ENST00000439475 NGEFQ8N5V2 710 aa13.63□□□□□ -0.23
MCF2L-216ENST00000439475 A0A0G2JLW4 131 aa13.62□□□□□ -0.23
MCF2L-216ENST00000439475 NBPF26B4DH59 902 aa13.62□□□□□ -0.23
MCF2L-216ENST00000439475 GNAI1P63096 354 aa13.62□□□□□ -0.23
MCF2L-216ENST00000439475 TBC1D9BQ66K14 1250 aa13.62□□□□□ -0.23
MCF2L-216ENST00000439475 NBPF10Q6P3W6 841 aaKnown RBP13.62□□□□□ -0.23
MCF2L-216ENST00000439475 NBPF15Q8N660 670 aa13.62□□□□□ -0.23
MCF2L-216ENST00000439475 CHMP4AQ9BY43 222 aa13.62□□□□□ -0.23
MCF2L-216ENST00000439475 PIM2Q9P1W9 311 aa13.62□□□□□ -0.23
MCF2L-216ENST00000439475 PDZRN3Q9UPQ7 1066 aa13.62□□□□□ -0.23
MCF2L-216ENST00000439475 CHD4Q14839 1912 aa13.61□□□□□ -0.23
MCF2L-216ENST00000439475 MYL6BP14649 208 aa13.61□□□□□ -0.23
MCF2L-216ENST00000439475 DPEP1P16444 411 aa13.61□□□□□ -0.23
MCF2L-216ENST00000439475 NCBP3Q53F19 620 aaKnown RBP13.61□□□□□ -0.23
MCF2L-216ENST00000439475 KIF6Q6ZMV9 814 aa13.61□□□□□ -0.23
MCF2L-216ENST00000439475 C10orf71Q711Q0 1435 aa13.61□□□□□ -0.23
MCF2L-216ENST00000439475 SRCAPQ6ZRS2 3230 aa13.61□□□□□ -0.23
MCF2L-216ENST00000439475 KIF13BQ9NQT8 1826 aa13.6□□□□□ -0.23
MCF2L-216ENST00000439475 ERVV-1B6SEH8 477 aa13.6□□□□□ -0.23
MCF2L-216ENST00000439475 YBX3P16989 372 aaKnown RBP eCLIP13.6□□□□□ -0.23
MCF2L-216ENST00000439475 IFT57Q9NWB7 429 aa13.6□□□□□ -0.23
MCF2L-216ENST00000439475 BCS1LQ9Y276 419 aa13.6□□□□□ -0.23
MCF2L-216ENST00000439475 CARMIL3Q8ND23 1372 aa13.59□□□□□ -0.23
MCF2L-216ENST00000439475 LAMB4A4D0S4 1761 aa13.59□□□□□ -0.23
MCF2L-216ENST00000439475 H0YIN7 160 aa13.59□□□□□ -0.23
MCF2L-216ENST00000439475 HOXB7P09629 217 aa13.59□□□□□ -0.23
MCF2L-216ENST00000439475 PDE6BP35913 854 aa13.59□□□□□ -0.23
MCF2L-216ENST00000439475 ST5P78524 1137 aa13.59□□□□□ -0.23
MCF2L-216ENST00000439475 CCDC27Q2M243 656 aa13.59□□□□□ -0.23
MCF2L-216ENST00000439475 TPTE2Q6XPS3 522 aa13.59□□□□□ -0.23
MCF2L-216ENST00000439475 WWC3Q9ULE0 1092 aa13.59□□□□□ -0.23
MCF2L-216ENST00000439475 NIP7Q9Y221 180 aaKnown RBP eCLIP13.59□□□□□ -0.23
MCF2L-216ENST00000439475 GTF2E1P29083 439 aaPredicted RBP13.58□□□□□ -0.24
MCF2L-216ENST00000439475 DALRD3Q5D0E6 543 aaKnown RBP13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms