RNA–Protein interactions for RNA: ENST00000438581.6

TMEM39A-202, Transcript of transmembrane protein 39A, humanhuman

TSL 1 (best)

Gene TMEM39A, Length 4,393 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-202ENST00000438581 RASSF8Q8NHQ8 419 aa9.72□□□□□ -0.85
TMEM39A-202ENST00000438581 PHAXQ9H814 394 aaKnown RBP9.72□□□□□ -0.85
TMEM39A-202ENST00000438581 MYOM2P54296 1465 aa9.72□□□□□ -0.85
TMEM39A-202ENST00000438581 MAP3K5Q99683 1374 aa9.72□□□□□ -0.85
TMEM39A-202ENST00000438581 TET3O43151 1660 aa9.72□□□□□ -0.85
TMEM39A-202ENST00000438581 AMOTL1Q8IY63 956 aa9.72□□□□□ -0.85
TMEM39A-202ENST00000438581 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.72□□□□□ -0.85
TMEM39A-202ENST00000438581 DDB1Q16531 1140 aa9.72□□□□□ -0.85
TMEM39A-202ENST00000438581 RRP12Q5JTH9 1297 aaKnown RBP9.72□□□□□ -0.85
TMEM39A-202ENST00000438581 ZNF526Q8TF50 670 aaPredicted RBP9.72□□□□□ -0.85
TMEM39A-202ENST00000438581 ATP6V1DQ9Y5K8 247 aa9.72□□□□□ -0.85
TMEM39A-202ENST00000438581 IQGAP3Q86VI3 1631 aa9.72□□□□□ -0.85
TMEM39A-202ENST00000438581 TMEM94Q12767 1356 aa9.71□□□□□ -0.85
TMEM39A-202ENST00000438581 ABCA9Q8IUA7 1624 aa9.71□□□□□ -0.85
TMEM39A-202ENST00000438581 RNMTO43148 476 aaKnown RBP9.71□□□□□ -0.85
TMEM39A-202ENST00000438581 HIP1O00291 1037 aa9.71□□□□□ -0.85
TMEM39A-202ENST00000438581 RABEP1Q15276 862 aa9.71□□□□□ -0.85
TMEM39A-202ENST00000438581 NFKBIBQ15653 356 aa9.71□□□□□ -0.85
TMEM39A-202ENST00000438581 CSPP1Q1MSJ5 1256 aa9.71□□□□□ -0.85
TMEM39A-202ENST00000438581 CLTCL1P53675 1640 aa9.71□□□□□ -0.86
TMEM39A-202ENST00000438581 DHX16O60231 1041 aaKnown RBP9.71□□□□□ -0.86
TMEM39A-202ENST00000438581 ZPR1O75312 459 aa9.71□□□□□ -0.86
TMEM39A-202ENST00000438581 IFIT5Q13325 482 aaKnown RBP9.71□□□□□ -0.86
TMEM39A-202ENST00000438581 SF3B2Q13435 895 aaKnown RBP9.71□□□□□ -0.86
TMEM39A-202ENST00000438581 IDH1O75874 414 aaKnown RBP9.7□□□□□ -0.86
TMEM39A-202ENST00000438581 CWF19L2Q2TBE0 894 aaKnown RBP9.7□□□□□ -0.86
TMEM39A-202ENST00000438581 DNAJC5Q9H3Z4 198 aa9.7□□□□□ -0.86
TMEM39A-202ENST00000438581 GLRX3O76003 335 aaKnown RBP9.7□□□□□ -0.86
TMEM39A-202ENST00000438581 PSMA5P28066 241 aa9.7□□□□□ -0.86
TMEM39A-202ENST00000438581 SSR1P43307 286 aaKnown RBP9.7□□□□□ -0.86
TMEM39A-202ENST00000438581 UPF3BQ9BZI7 483 aaKnown RBP9.7□□□□□ -0.86
TMEM39A-202ENST00000438581 ABCF2Q9UG63 623 aa9.7□□□□□ -0.86
TMEM39A-202ENST00000438581 KDM5AP29375 1690 aaKnown RBP9.7□□□□□ -0.86
TMEM39A-202ENST00000438581 ERICH2A1L162 156 aa9.7□□□□□ -0.86
TMEM39A-202ENST00000438581 TPM2P07951 284 aa9.7□□□□□ -0.86
TMEM39A-202ENST00000438581 IGHMBP2P38935 993 aaKnown RBP9.7□□□□□ -0.86
TMEM39A-202ENST00000438581 PDCL3Q9H2J4 239 aa9.7□□□□□ -0.86
TMEM39A-202ENST00000438581 ARHGAP31Q2M1Z3 1444 aa9.7□□□□□ -0.86
TMEM39A-202ENST00000438581 RAB11FIP3O75154 756 aa9.7□□□□□ -0.86
TMEM39A-202ENST00000438581 NUCB2P80303 420 aa9.7□□□□□ -0.86
TMEM39A-202ENST00000438581 DCAF5Q96JK2 942 aa9.7□□□□□ -0.86
TMEM39A-202ENST00000438581 TRIM34Q9BYJ4 488 aa9.7□□□□□ -0.86
TMEM39A-202ENST00000438581 STK3Q13188 491 aa9.69□□□□□ -0.86
TMEM39A-202ENST00000438581 CWC25Q9NXE8 425 aaPredicted RBP9.69□□□□□ -0.86
TMEM39A-202ENST00000438581 ZNF652Q9Y2D9 606 aa9.69□□□□□ -0.86
TMEM39A-202ENST00000438581 CHL1O00533 1208 aa9.69□□□□□ -0.86
TMEM39A-202ENST00000438581 KSR2Q6VAB6 950 aa9.69□□□□□ -0.86
TMEM39A-202ENST00000438581 C16orf71Q8IYS4 520 aaPredicted RBP9.69□□□□□ -0.86
TMEM39A-202ENST00000438581 TEX13AQ9BXU3 409 aaPredicted RBP9.69□□□□□ -0.86
TMEM39A-202ENST00000438581 GNL3LQ9NVN8 582 aaKnown RBP9.69□□□□□ -0.86
TMEM39A-202ENST00000438581 RBM28Q9NW13 759 aaKnown RBP9.69□□□□□ -0.86
TMEM39A-202ENST00000438581 TRIM29Q14134 588 aa9.69□□□□□ -0.86
TMEM39A-202ENST00000438581 VPS53Q5VIR6 699 aa9.69□□□□□ -0.86
TMEM39A-202ENST00000438581 NLRP1Q9C000 1473 aa9.69□□□□□ -0.86
TMEM39A-202ENST00000438581 MARCH6O60337 910 aa9.68□□□□□ -0.86
TMEM39A-202ENST00000438581 CHMP4CQ96CF2 233 aa9.68□□□□□ -0.86
TMEM39A-202ENST00000438581 SNRKQ9NRH2 765 aa9.68□□□□□ -0.86
TMEM39A-202ENST00000438581 A2ML1A8K2U0 1454 aa9.68□□□□□ -0.86
TMEM39A-202ENST00000438581 SHROOM2Q13796 1616 aa9.68□□□□□ -0.86
TMEM39A-202ENST00000438581 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.68□□□□□ -0.86
TMEM39A-202ENST00000438581 NPHP4O75161 1426 aaPredicted RBP9.68□□□□□ -0.86
TMEM39A-202ENST00000438581 GOLGA6L6A8MZA4 724 aa9.68□□□□□ -0.86
TMEM39A-202ENST00000438581 ATP6V1AP38606 617 aa9.68□□□□□ -0.86
TMEM39A-202ENST00000438581 LDHAL6AQ6ZMR3 332 aa9.68□□□□□ -0.86
TMEM39A-202ENST00000438581 CREBRFQ8IUR6 639 aa9.68□□□□□ -0.86
TMEM39A-202ENST00000438581 ANKRD44Q8N8A2 993 aa9.68□□□□□ -0.86
TMEM39A-202ENST00000438581 PA2G4Q9UQ80 394 aaKnown RBP9.68□□□□□ -0.86
TMEM39A-202ENST00000438581 CYP46A1Q9Y6A2 500 aa9.68□□□□□ -0.86
TMEM39A-202ENST00000438581 IFIT1P09914 478 aaKnown RBP9.68□□□□□ -0.86
TMEM39A-202ENST00000438581 CHAF1AQ13111 956 aaPredicted RBP9.68□□□□□ -0.86
TMEM39A-202ENST00000438581 HDAC1Q13547 482 aaPredicted RBP9.68□□□□□ -0.86
TMEM39A-202ENST00000438581 HSP90AB3PQ58FF7 597 aa9.68□□□□□ -0.86
TMEM39A-202ENST00000438581 TSPYL1Q9H0U9 437 aa9.68□□□□□ -0.86
TMEM39A-202ENST00000438581 ZBTB40Q9NUA8 1239 aa9.68□□□□□ -0.86
TMEM39A-202ENST00000438581 LRP2BPQ9P2M1 347 aa9.68□□□□□ -0.86
TMEM39A-202ENST00000438581 RNF17Q9BXT8 1623 aaKnown RBP9.67□□□□□ -0.86
TMEM39A-202ENST00000438581 GRM8O00222 908 aa9.67□□□□□ -0.86
TMEM39A-202ENST00000438581 ZNF790Q6PG37 636 aa9.67□□□□□ -0.86
TMEM39A-202ENST00000438581 RHPN1Q8TCX5 695 aa9.67□□□□□ -0.86
TMEM39A-202ENST00000438581 JAKMIP1Q96N16 626 aaKnown RBP9.67□□□□□ -0.86
TMEM39A-202ENST00000438581 TTC36A6NLP5 189 aa9.67□□□□□ -0.86
TMEM39A-202ENST00000438581 MSNP26038 577 aaKnown RBP9.67□□□□□ -0.86
TMEM39A-202ENST00000438581 GSE1Q14687 1217 aa9.67□□□□□ -0.86
TMEM39A-202ENST00000438581 NBPF20Q3BBV1 942 aa9.67□□□□□ -0.86
TMEM39A-202ENST00000438581 LMBR1LQ6UX01 489 aa9.67□□□□□ -0.86
TMEM39A-202ENST00000438581 RAI14Q9P0K7 980 aa9.67□□□□□ -0.86
TMEM39A-202ENST00000438581 UNC13BO14795 1591 aa9.67□□□□□ -0.86
TMEM39A-202ENST00000438581 IL17REQ8NFR9 667 aa9.67□□□□□ -0.86
TMEM39A-202ENST00000438581 BICD2Q8TD16 824 aa9.67□□□□□ -0.86
TMEM39A-202ENST00000438581 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.67□□□□□ -0.86
TMEM39A-202ENST00000438581 RIMBP3CA6NJZ7 1639 aa9.67□□□□□ -0.86
TMEM39A-202ENST00000438581 RIMBP3BA6NNM3 1639 aa9.67□□□□□ -0.86
TMEM39A-202ENST00000438581 RIMBP3Q9UFD9 1639 aa9.67□□□□□ -0.86
TMEM39A-202ENST00000438581 KCNQ3O43525 872 aa9.66□□□□□ -0.86
TMEM39A-202ENST00000438581 CROCC2H7BZ55 1655 aa9.66□□□□□ -0.86
TMEM39A-202ENST00000438581 BLOC1S2Q6QNY1 142 aa9.66□□□□□ -0.86
TMEM39A-202ENST00000438581 TBC1D9Q6ZT07 1266 aa9.66□□□□□ -0.86
TMEM39A-202ENST00000438581 SMAP1Q8IYB5 467 aaPredicted RBP9.66□□□□□ -0.86
TMEM39A-202ENST00000438581 LINS1Q8NG48 757 aa9.66□□□□□ -0.86
TMEM39A-202ENST00000438581 ECHDC1Q9NTX5 307 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms