RNA–Protein interactions for RNA: ENST00000434472.6

CD44-210, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-210ENST00000434472 SURF6O75683 361 aaKnown RBP12.71□□□□□ -0.37
CD44-210ENST00000434472 CYP2E1P05181 493 aaPredicted RBP12.71□□□□□ -0.37
CD44-210ENST00000434472 ANKRD24Q8TF21 1146 aa12.71□□□□□ -0.37
CD44-210ENST00000434472 RTN4Q9NQC3 1192 aaKnown RBP12.71□□□□□ -0.37
CD44-210ENST00000434472 CHPF2Q9P2E5 772 aa12.71□□□□□ -0.37
CD44-210ENST00000434472 KLHL40Q2TBA0 621 aa12.7□□□□□ -0.38
CD44-210ENST00000434472 RHPN1Q8TCX5 695 aa12.7□□□□□ -0.38
CD44-210ENST00000434472 LRRC59Q96AG4 307 aaKnown RBP12.7□□□□□ -0.38
CD44-210ENST00000434472 GRPEL1Q9HAV7 217 aa12.7□□□□□ -0.38
CD44-210ENST00000434472 PI4KAP2A4QPH2 592 aa12.7□□□□□ -0.38
CD44-210ENST00000434472 MTX1Q13505 466 aa12.7□□□□□ -0.38
CD44-210ENST00000434472 KRT28Q7Z3Y7 464 aa12.7□□□□□ -0.38
CD44-210ENST00000434472 PI4KAP1Q8N8J0 262 aa12.7□□□□□ -0.38
CD44-210ENST00000434472 USP42Q9H9J4 1324 aaKnown RBP12.69□□□□□ -0.38
CD44-210ENST00000434472 HEG1Q9ULI3 1381 aa12.69□□□□□ -0.38
CD44-210ENST00000434472 SRGAP3O43295 1099 aa12.69□□□□□ -0.38
CD44-210ENST00000434472 NEK4P51957 841 aa12.69□□□□□ -0.38
CD44-210ENST00000434472 KSR2Q6VAB6 950 aa12.69□□□□□ -0.38
CD44-210ENST00000434472 MPRIPQ6WCQ1 1025 aa12.69□□□□□ -0.38
CD44-210ENST00000434472 ERC1Q8IUD2 1116 aa12.69□□□□□ -0.38
CD44-210ENST00000434472 ORAI2Q96SN7 254 aa12.69□□□□□ -0.38
CD44-210ENST00000434472 ANO2Q9NQ90 1003 aa12.69□□□□□ -0.38
CD44-210ENST00000434472 HYPKQ9NX55 129 aa12.69□□□□□ -0.38
CD44-210ENST00000434472 TTC41PQ6P2S7 1318 aa12.68□□□□□ -0.38
CD44-210ENST00000434472 TRPM3Q9HCF6 1732 aaPredicted RBP12.68□□□□□ -0.38
CD44-210ENST00000434472 ADCY9O60503 1353 aa12.68□□□□□ -0.38
CD44-210ENST00000434472 PLEKHG2Q9H7P9 1386 aa12.68□□□□□ -0.38
CD44-210ENST00000434472 DDX58O95786 925 aaKnown RBP12.68□□□□□ -0.38
CD44-210ENST00000434472 CNTROBQ8N137 903 aa12.68□□□□□ -0.38
CD44-210ENST00000434472 RBM33Q96EV2 1170 aaKnown RBP12.68□□□□□ -0.38
CD44-210ENST00000434472 INTS4Q96HW7 963 aaKnown RBP12.68□□□□□ -0.38
CD44-210ENST00000434472 RGPD2P0DJD1 1756 aa12.68□□□□□ -0.38
CD44-210ENST00000434472 KCNQ3O43525 872 aa12.67□□□□□ -0.38
CD44-210ENST00000434472 GIGYF1O75420 1035 aaPredicted RBP12.67□□□□□ -0.38
CD44-210ENST00000434472 CUL4AQ13619 759 aa12.67□□□□□ -0.38
CD44-210ENST00000434472 TSHZ3Q63HK5 1081 aa12.67□□□□□ -0.38
CD44-210ENST00000434472 PROSER2Q86WR7 435 aaPredicted RBP12.67□□□□□ -0.38
CD44-210ENST00000434472 IL1RAPL2Q9NP60 686 aa12.67□□□□□ -0.38
CD44-210ENST00000434472 DDX49Q9Y6V7 483 aaKnown RBP12.67□□□□□ -0.38
CD44-210ENST00000434472 NBPF7P0C2Y1 421 aaPredicted RBP12.66□□□□□ -0.38
CD44-210ENST00000434472 NUTM1Q86Y26 1132 aa12.66□□□□□ -0.38
CD44-210ENST00000434472 GPATCH3Q96I76 525 aa12.66□□□□□ -0.38
CD44-210ENST00000434472 TMX3Q96JJ7 454 aa12.66□□□□□ -0.38
CD44-210ENST00000434472 C1orf167Q5SNV9 1468 aa12.66□□□□□ -0.38
CD44-210ENST00000434472 ADAMTS7Q9UKP4 1686 aa12.66□□□□□ -0.38
CD44-210ENST00000434472 GLRX3O76003 335 aaKnown RBP12.66□□□□□ -0.38
CD44-210ENST00000434472 OS9Q13438 667 aaPredicted RBP12.66□□□□□ -0.38
CD44-210ENST00000434472 MCTP1Q6DN14 999 aa12.66□□□□□ -0.38
CD44-210ENST00000434472 LMOD2Q6P5Q4 547 aa12.66□□□□□ -0.38
CD44-210ENST00000434472 PI4K2BQ8TCG2 481 aa12.66□□□□□ -0.38
CD44-210ENST00000434472 C19orf44Q9H6X5 657 aa12.66□□□□□ -0.38
CD44-210ENST00000434472 C9orf78Q9NZ63 289 aaPredicted RBP12.66□□□□□ -0.38
CD44-210ENST00000434472 PXDNQ92626 1479 aa12.66□□□□□ -0.38
CD44-210ENST00000434472 ABCC6O95255 1503 aa12.65□□□□□ -0.38
CD44-210ENST00000434472 HSPA4P34932 840 aa12.65□□□□□ -0.38
CD44-210ENST00000434472 CLASRPQ8N2M8 674 aaKnown RBP12.65□□□□□ -0.38
CD44-210ENST00000434472 LINS1Q8NG48 757 aa12.65□□□□□ -0.38
CD44-210ENST00000434472 RUFY2Q8WXA3 655 aa12.65□□□□□ -0.38
CD44-210ENST00000434472 DDX21Q9NR30 783 aaKnown RBP eCLIP12.65□□□□□ -0.38
CD44-210ENST00000434472 MAP3K2Q9Y2U5 619 aa12.65□□□□□ -0.38
CD44-210ENST00000434472 SGSM2O43147 1006 aa12.64□□□□□ -0.39
CD44-210ENST00000434472 KIAA1211Q6ZU35 1233 aa12.64□□□□□ -0.39
CD44-210ENST00000434472 UNC5CLQ8IV45 518 aa12.64□□□□□ -0.39
CD44-210ENST00000434472 ZGPATQ8N5A5 531 aaKnown RBP12.64□□□□□ -0.39
CD44-210ENST00000434472 RAPGEF4Q8WZA2 1011 aa12.64□□□□□ -0.39
CD44-210ENST00000434472 ARXQ96QS3 562 aa12.64□□□□□ -0.39
CD44-210ENST00000434472 LMBRD1Q9NUN5 540 aa12.64□□□□□ -0.39
CD44-210ENST00000434472 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.64□□□□□ -0.39
CD44-210ENST00000434472 SPG7Q9UQ90 795 aa12.64□□□□□ -0.39
CD44-210ENST00000434472 UTYO14607 1347 aa12.64□□□□□ -0.39
CD44-210ENST00000434472 SIPA1L3O60292 1781 aaPredicted RBP12.64□□□□□ -0.39
CD44-210ENST00000434472 TATP17735 454 aaPredicted RBP12.63□□□□□ -0.39
CD44-210ENST00000434472 ZNF445P59923 1031 aa12.63□□□□□ -0.39
CD44-210ENST00000434472 XPCQ01831 940 aaPredicted RBP12.63□□□□□ -0.39
CD44-210ENST00000434472 ERBB3P21860 1342 aa12.63□□□□□ -0.39
CD44-210ENST00000434472 PANK2Q9BZ23 570 aa12.62□□□□□ -0.39
CD44-210ENST00000434472 ECHDC1Q9NTX5 307 aa12.62□□□□□ -0.39
CD44-210ENST00000434472 PALD1Q9ULE6 856 aa12.62□□□□□ -0.39
CD44-210ENST00000434472 RAD50Q92878 1312 aa12.62□□□□□ -0.39
CD44-210ENST00000434472 ALS2Q96Q42 1657 aa12.62□□□□□ -0.39
CD44-210ENST00000434472 HIP1O00291 1037 aa12.62□□□□□ -0.39
CD44-210ENST00000434472 ANXA1P04083 346 aa12.62□□□□□ -0.39
CD44-210ENST00000434472 LARP1Q6PKG0 1096 aaKnown RBP12.62□□□□□ -0.39
CD44-210ENST00000434472 ANP32BQ92688 251 aaKnown RBP12.62□□□□□ -0.39
CD44-210ENST00000434472 AXIN2Q9Y2T1 843 aa12.62□□□□□ -0.39
CD44-210ENST00000434472 DCCP43146 1447 aa12.62□□□□□ -0.39
CD44-210ENST00000434472 CRYBG1Q9Y4K1 1723 aa12.61□□□□□ -0.39
CD44-210ENST00000434472 GRM8O00222 908 aa12.61□□□□□ -0.39
CD44-210ENST00000434472 PLEKHG5O94827 1062 aa12.61□□□□□ -0.39
CD44-210ENST00000434472 BRD1O95696 1058 aa12.61□□□□□ -0.39
CD44-210ENST00000434472 MBD3O95983 291 aa12.61□□□□□ -0.39
CD44-210ENST00000434472 IFIT2P09913 472 aaKnown RBP12.61□□□□□ -0.39
CD44-210ENST00000434472 ATF3P18847 181 aa12.61□□□□□ -0.39
CD44-210ENST00000434472 GAS2L3Q86XJ1 694 aa12.61□□□□□ -0.39
CD44-210ENST00000434472 LSG1Q9H089 658 aaKnown RBP12.61□□□□□ -0.39
CD44-210ENST00000434472 SLC52A2Q9HAB3 445 aa12.61□□□□□ -0.39
CD44-210ENST00000434472 DIAPH3Q9NSV4 1193 aa12.61□□□□□ -0.39
CD44-210ENST00000434472 ZDHHC9Q9Y397 364 aa12.61□□□□□ -0.39
CD44-210ENST00000434472 AK9Q5TCS8 1911 aa12.61□□□□□ -0.39
CD44-210ENST00000434472 NEXNQ0ZGT2 675 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 161.9 ms