RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 GLI3P10071 1580 aa33.13■■■□□ 2.89
LDB1-202ENST00000425280 PLCH1Q4KWH8 1693 aa33.12■■■□□ 2.89
LDB1-202ENST00000425280 MSH5O43196 834 aa33.11■■■□□ 2.89
LDB1-202ENST00000425280 HMMRO75330 724 aa33.1■■■□□ 2.89
LDB1-202ENST00000425280 KSR2Q6VAB6 950 aa33.1■■■□□ 2.89
LDB1-202ENST00000425280 ADAMTS2O95450 1211 aa33.09■■■□□ 2.89
LDB1-202ENST00000425280 USP16Q9Y5T5 823 aa33.09■■■□□ 2.89
LDB1-202ENST00000425280 TOGARAM1Q9Y4F4 1720 aa33.09■■■□□ 2.89
LDB1-202ENST00000425280 MAP3K2Q9Y2U5 619 aa33.09■■■□□ 2.89
LDB1-202ENST00000425280 PAPPAQ13219 1627 aa33.09■■■□□ 2.89
LDB1-202ENST00000425280 UBR2Q8IWV8 1755 aa33.08■■■□□ 2.89
LDB1-202ENST00000425280 UBTFL1P0CB47 393 aaPredicted RBP33.08■■■□□ 2.89
LDB1-202ENST00000425280 LRRFIP2Q9Y608 721 aaKnown RBP33.08■■■□□ 2.89
LDB1-202ENST00000425280 LAMB4A4D0S4 1761 aa33.06■■■□□ 2.88
LDB1-202ENST00000425280 NRAPQ86VF7 1730 aa33.05■■■□□ 2.88
LDB1-202ENST00000425280 DDX58O95786 925 aaKnown RBP33.05■■■□□ 2.88
LDB1-202ENST00000425280 ATP8B2P98198 1209 aa33.05■■■□□ 2.88
LDB1-202ENST00000425280 KCPQ6ZWJ8 1503 aa33.04■■■□□ 2.88
LDB1-202ENST00000425280 UBAP1LF5GYI3 381 aa33.04■■■□□ 2.88
LDB1-202ENST00000425280 MYL6BP14649 208 aa33.04■■■□□ 2.88
LDB1-202ENST00000425280 WNK3Q9BYP7 1800 aa33.04■■■□□ 2.88
LDB1-202ENST00000425280 AIMP1Q12904 312 aaKnown RBP33.03■■■□□ 2.88
LDB1-202ENST00000425280 IPO9Q96P70 1041 aaKnown RBP33.03■■■□□ 2.88
LDB1-202ENST00000425280 SEC24BO95487 1268 aa33.03■■■□□ 2.88
LDB1-202ENST00000425280 NUTM2BA6NNL0 878 aaPredicted RBP33.02■■■□□ 2.88
LDB1-202ENST00000425280 NUTM2EB1AL46 878 aaPredicted RBP33.02■■■□□ 2.88
LDB1-202ENST00000425280 LRP10Q7Z4F1 713 aa33.02■■■□□ 2.88
LDB1-202ENST00000425280 NUTM2AQ8IVF1 878 aaPredicted RBP33.02■■■□□ 2.88
LDB1-202ENST00000425280 PNMA6EA0A0J9YXQ4 647 aa33.01■■■□□ 2.88
LDB1-202ENST00000425280 ALDH1L1O75891 902 aa33.01■■■□□ 2.88
LDB1-202ENST00000425280 TNS2Q63HR2 1409 aa33.01■■■□□ 2.87
LDB1-202ENST00000425280 NBPF7P0C2Y1 421 aaPredicted RBP33■■■□□ 2.87
LDB1-202ENST00000425280 XAGE3Q8WTP9 111 aa33■■■□□ 2.87
LDB1-202ENST00000425280 TMOD3Q9NYL9 352 aa32.99■■■□□ 2.87
LDB1-202ENST00000425280 ZBTB47Q9UFB7 747 aaPredicted RBP32.98■■■□□ 2.87
LDB1-202ENST00000425280 COPS6Q7L5N1 327 aa32.98■■■□□ 2.87
LDB1-202ENST00000425280 PIP4K2AP48426 406 aaPredicted RBP32.97■■■□□ 2.87
LDB1-202ENST00000425280 LINS1Q8NG48 757 aa32.97■■■□□ 2.87
LDB1-202ENST00000425280 BMP2KLQ5H9B9 411 aa32.96■■■□□ 2.87
LDB1-202ENST00000425280 RIC3Q7Z5B4 369 aa32.96■■■□□ 2.87
LDB1-202ENST00000425280 SPATA31A1Q5TZJ5 1347 aa32.96■■■□□ 2.87
LDB1-202ENST00000425280 APBB1O00213 710 aa32.95■■■□□ 2.87
LDB1-202ENST00000425280 EXOC5O00471 708 aa32.95■■■□□ 2.87
LDB1-202ENST00000425280 SMARCA5O60264 1052 aaPredicted RBP32.95■■■□□ 2.87
LDB1-202ENST00000425280 CWF19L2Q2TBE0 894 aaKnown RBP32.95■■■□□ 2.87
LDB1-202ENST00000425280 PLEKHM2Q8IWE5 1019 aa32.95■■■□□ 2.87
LDB1-202ENST00000425280 PTCD1O75127 700 aaKnown RBP32.95■■■□□ 2.86
LDB1-202ENST00000425280 C16orf71Q8IYS4 520 aaPredicted RBP32.95■■■□□ 2.86
LDB1-202ENST00000425280 ERBB4Q15303 1308 aa32.94■■■□□ 2.86
LDB1-202ENST00000425280 ITGB4P16144 1822 aa32.94■■■□□ 2.86
LDB1-202ENST00000425280 NWD2Q9ULI1 1742 aa32.94■■■□□ 2.86
LDB1-202ENST00000425280 SSH3Q8TE77 659 aa32.93■■■□□ 2.86
LDB1-202ENST00000425280 EXOC6BQ9Y2D4 811 aa32.93■■■□□ 2.86
LDB1-202ENST00000425280 PIGBQ92521 554 aa32.93■■■□□ 2.86
LDB1-202ENST00000425280 THRAP3Q9Y2W1 955 aaKnown RBP32.92■■■□□ 2.86
LDB1-202ENST00000425280 SLIT2O94813 1529 aa32.92■■■□□ 2.86
LDB1-202ENST00000425280 LRP6O75581 1613 aa32.92■■■□□ 2.86
LDB1-202ENST00000425280 CDCA7Q9BWT1 371 aaPredicted RBP32.92■■■□□ 2.86
LDB1-202ENST00000425280 C9orf78Q9NZ63 289 aaPredicted RBP32.92■■■□□ 2.86
LDB1-202ENST00000425280 ANKRD13DQ6ZTN6 518 aa32.91■■■□□ 2.86
LDB1-202ENST00000425280 PPP1R42Q7Z4L9 355 aa32.91■■■□□ 2.86
LDB1-202ENST00000425280 NBPF26B4DH59 902 aa32.9■■■□□ 2.86
LDB1-202ENST00000425280 POLA2Q14181 598 aa32.9■■■□□ 2.86
LDB1-202ENST00000425280 NBPF14Q5TI25 921 aa32.9■■■□□ 2.86
LDB1-202ENST00000425280 NBPF10Q6P3W6 841 aaKnown RBP32.9■■■□□ 2.86
LDB1-202ENST00000425280 NBPF15Q8N660 670 aa32.9■■■□□ 2.86
LDB1-202ENST00000425280 IGKV5-2P06315 115 aa32.9■■■□□ 2.86
LDB1-202ENST00000425280 OTUD7AQ8TE49 926 aaPredicted RBP32.9■■■□□ 2.86
LDB1-202ENST00000425280 METTL22Q9BUU2 404 aaPredicted RBP32.9■■■□□ 2.86
LDB1-202ENST00000425280 BCL11AQ9H165 835 aa32.9■■■□□ 2.86
LDB1-202ENST00000425280 IBTKQ9P2D0 1353 aaPredicted RBP32.89■■■□□ 2.86
LDB1-202ENST00000425280 ASAP1Q9ULH1 1129 aa32.89■■■□□ 2.86
LDB1-202ENST00000425280 UTYO14607 1347 aa32.88■■■□□ 2.85
LDB1-202ENST00000425280 SPATA31A5Q5VU36 1347 aa32.88■■■□□ 2.85
LDB1-202ENST00000425280 SPATA31A7Q8IWB4 1347 aa32.88■■■□□ 2.85
LDB1-202ENST00000425280 NEXNQ0ZGT2 675 aa32.87■■■□□ 2.85
LDB1-202ENST00000425280 GRM8O00222 908 aa32.87■■■□□ 2.85
LDB1-202ENST00000425280 MYD88Q99836 296 aa32.86■■■□□ 2.85
LDB1-202ENST00000425280 ATG3Q9NT62 314 aa32.86■■■□□ 2.85
LDB1-202ENST00000425280 ARFGEF2Q9Y6D5 1785 aa32.86■■■□□ 2.85
LDB1-202ENST00000425280 SRGAP3O43295 1099 aa32.86■■■□□ 2.85
LDB1-202ENST00000425280 LRRCC1Q9C099 1032 aa32.86■■■□□ 2.85
LDB1-202ENST00000425280 BCL9O00512 1426 aa32.85■■■□□ 2.85
LDB1-202ENST00000425280 NEURL1BA8MQ27 555 aa32.85■■■□□ 2.85
LDB1-202ENST00000425280 A1BGP04217 495 aa32.85■■■□□ 2.85
LDB1-202ENST00000425280 HDAC5Q9UQL6 1122 aa32.85■■■□□ 2.85
LDB1-202ENST00000425280 DDRGK1Q96HY6 314 aa32.84■■■□□ 2.85
LDB1-202ENST00000425280 NOP58Q9Y2X3 529 aaKnown RBP32.84■■■□□ 2.85
LDB1-202ENST00000425280 JCADQ9P266 1359 aa32.84■■■□□ 2.85
LDB1-202ENST00000425280 GSPT1P15170 499 aaKnown RBP32.84■■■□□ 2.85
LDB1-202ENST00000425280 MTX1Q13505 466 aa32.84■■■□□ 2.85
LDB1-202ENST00000425280 TTC22Q5TAA0 569 aa32.84■■■□□ 2.85
LDB1-202ENST00000425280 UPF2Q9HAU5 1272 aaKnown RBP32.84■■■□□ 2.85
LDB1-202ENST00000425280 PLBD2Q8NHP8 589 aa32.83■■■□□ 2.85
LDB1-202ENST00000425280 DDB1Q16531 1140 aa32.82■■■□□ 2.84
LDB1-202ENST00000425280 GCKRQ14397 625 aa32.81■■■□□ 2.84
LDB1-202ENST00000425280 VSIG10Q8N0Z9 540 aa32.81■■■□□ 2.84
LDB1-202ENST00000425280 SUCLG2Q96I99 432 aa32.8■■■□□ 2.84
LDB1-202ENST00000425280 CCDC9Q9Y3X0 531 aaKnown RBP32.8■■■□□ 2.84
LDB1-202ENST00000425280 BARGINQ6ZT62 677 aa32.79■■■□□ 2.84
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms