RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 C8orf58Q8NAV2 365 aa22.02■■□□□ 1.12
COL7A1-202ENST00000422991 TEX13AQ9BXU3 409 aaPredicted RBP22.02■■□□□ 1.12
COL7A1-202ENST00000422991 QSER1Q2KHR3 1735 aa22.02■■□□□ 1.12
COL7A1-202ENST00000422991 HOXB7P09629 217 aa22.01■■□□□ 1.11
COL7A1-202ENST00000422991 CYP19A1P11511 503 aaPredicted RBP22.01■■□□□ 1.11
COL7A1-202ENST00000422991 HMGB2P26583 209 aaKnown RBP22.01■■□□□ 1.11
COL7A1-202ENST00000422991 CNTNAP4Q9C0A0 1308 aa22.01■■□□□ 1.11
COL7A1-202ENST00000422991 EXOSC9Q06265 439 aaKnown RBP22■■□□□ 1.11
COL7A1-202ENST00000422991 DUSP27Q5VZP5 1158 aa22■■□□□ 1.11
COL7A1-202ENST00000422991 USP16Q9Y5T5 823 aa22■■□□□ 1.11
COL7A1-202ENST00000422991 STARD3NLO95772 234 aa21.99■■□□□ 1.11
COL7A1-202ENST00000422991 CRKLP46109 303 aaKnown RBP21.99■■□□□ 1.11
COL7A1-202ENST00000422991 TSPYL6Q8N831 410 aa21.99■■□□□ 1.11
COL7A1-202ENST00000422991 ANO8Q9HCE9 1232 aaPredicted RBP21.99■■□□□ 1.11
COL7A1-202ENST00000422991 SOS1Q07889 1333 aaPredicted RBP21.99■■□□□ 1.11
COL7A1-202ENST00000422991 ZNF827Q17R98 1081 aa21.98■■□□□ 1.11
COL7A1-202ENST00000422991 RC3H1Q5TC82 1133 aaKnown RBP21.98■■□□□ 1.11
COL7A1-202ENST00000422991 AKT1S1Q96B36 256 aa21.98■■□□□ 1.11
COL7A1-202ENST00000422991 CCDC87Q9NVE4 849 aa21.97■■□□□ 1.11
COL7A1-202ENST00000422991 ELL2O00472 640 aaPredicted RBP21.96■■□□□ 1.11
COL7A1-202ENST00000422991 TWISTNBQ3B726 338 aaPredicted RBP21.96■■□□□ 1.11
COL7A1-202ENST00000422991 INTS5Q6P9B9 1019 aaKnown RBP21.96■■□□□ 1.11
COL7A1-202ENST00000422991 C4AP0C0L4 1744 aa21.95■■□□□ 1.1
COL7A1-202ENST00000422991 AK7Q96M32 723 aa21.95■■□□□ 1.1
COL7A1-202ENST00000422991 STK32BQ9NY57 414 aa21.95■■□□□ 1.1
COL7A1-202ENST00000422991 ZBTB1Q9Y2K1 713 aa21.95■■□□□ 1.1
COL7A1-202ENST00000422991 A1BGP04217 495 aa21.94■■□□□ 1.1
COL7A1-202ENST00000422991 HDGFL1Q5TGJ6 251 aa21.94■■□□□ 1.1
COL7A1-202ENST00000422991 ERBB4Q15303 1308 aa21.94■■□□□ 1.1
COL7A1-202ENST00000422991 GNPATO15228 680 aa21.93■■□□□ 1.1
COL7A1-202ENST00000422991 EIF2S2P20042 333 aaKnown RBP21.93■■□□□ 1.1
COL7A1-202ENST00000422991 SLC15A2Q16348 729 aa21.93■■□□□ 1.1
COL7A1-202ENST00000422991 VAMP4O75379 141 aa21.92■■□□□ 1.1
COL7A1-202ENST00000422991 AMIGO3Q86WK7 504 aa21.92■■□□□ 1.1
COL7A1-202ENST00000422991 NBPF26B4DH59 902 aa21.91■■□□□ 1.1
COL7A1-202ENST00000422991 RPS6KA4O75676 772 aa21.91■■□□□ 1.1
COL7A1-202ENST00000422991 NBPF10Q6P3W6 841 aaKnown RBP21.91■■□□□ 1.1
COL7A1-202ENST00000422991 NBPF15Q8N660 670 aa21.91■■□□□ 1.1
COL7A1-202ENST00000422991 NECTIN2Q92692 538 aa21.91■■□□□ 1.1
COL7A1-202ENST00000422991 CACNA1FO60840 1977 aa21.9■■□□□ 1.1
COL7A1-202ENST00000422991 CASZ1Q86V15 1759 aa21.9■■□□□ 1.1
COL7A1-202ENST00000422991 PIP4K2AP48426 406 aaPredicted RBP21.9■■□□□ 1.1
COL7A1-202ENST00000422991 TFCP2L1Q9NZI6 479 aa21.9■■□□□ 1.1
COL7A1-202ENST00000422991 COL15A1P39059 1388 aa21.89■■□□□ 1.1
COL7A1-202ENST00000422991 SCN7AQ01118 1682 aa21.89■■□□□ 1.1
COL7A1-202ENST00000422991 CANXP27824 592 aaKnown RBP21.89■■□□□ 1.09
COL7A1-202ENST00000422991 PDIA6Q15084 440 aa21.89■■□□□ 1.09
COL7A1-202ENST00000422991 CHMP4AQ9BY43 222 aa21.89■■□□□ 1.09
COL7A1-202ENST00000422991 CHPF2Q9P2E5 772 aa21.89■■□□□ 1.09
COL7A1-202ENST00000422991 RTCBQ9Y3I0 505 aaKnown RBP21.89■■□□□ 1.09
COL7A1-202ENST00000422991 BCORQ6W2J9 1755 aa21.89■■□□□ 1.09
COL7A1-202ENST00000422991 CT47B1P0C2W7 299 aaPredicted RBP21.88■■□□□ 1.09
COL7A1-202ENST00000422991 SSFA2P28290 1259 aa21.88■■□□□ 1.09
COL7A1-202ENST00000422991 IL6STP40189 918 aaPredicted RBP21.88■■□□□ 1.09
COL7A1-202ENST00000422991 EIF5P55010 431 aaKnown RBP21.88■■□□□ 1.09
COL7A1-202ENST00000422991 PROSER3Q2NL68 480 aa21.88■■□□□ 1.09
COL7A1-202ENST00000422991 CCDC30Q5VVM6 783 aa21.88■■□□□ 1.09
COL7A1-202ENST00000422991 SPON1Q9HCB6 807 aa21.88■■□□□ 1.09
COL7A1-202ENST00000422991 PNPLA7Q6ZV29 1317 aa21.87■■□□□ 1.09
COL7A1-202ENST00000422991 ADRA2BP18089 450 aa21.87■■□□□ 1.09
COL7A1-202ENST00000422991 SMIM5Q71RC9 77 aa21.87■■□□□ 1.09
COL7A1-202ENST00000422991 LRP10Q7Z4F1 713 aa21.87■■□□□ 1.09
COL7A1-202ENST00000422991 DDX21Q9NR30 783 aaKnown RBP eCLIP21.87■■□□□ 1.09
COL7A1-202ENST00000422991 DBF4Q9UBU7 674 aaPredicted RBP21.87■■□□□ 1.09
COL7A1-202ENST00000422991 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.86■■□□□ 1.09
COL7A1-202ENST00000422991 PHF14O94880 888 aa21.86■■□□□ 1.09
COL7A1-202ENST00000422991 ANXA1P04083 346 aa21.85■■□□□ 1.09
COL7A1-202ENST00000422991 MYL6BP14649 208 aa21.85■■□□□ 1.09
COL7A1-202ENST00000422991 ZNF428Q96B54 188 aa21.85■■□□□ 1.09
COL7A1-202ENST00000422991 FLAD1Q8NFF5 587 aa21.84■■□□□ 1.09
COL7A1-202ENST00000422991 STK31Q9BXU1 1019 aa21.84■■□□□ 1.09
COL7A1-202ENST00000422991 PDGFDQ9GZP0 370 aaPredicted RBP21.84■■□□□ 1.09
COL7A1-202ENST00000422991 ZNF330Q9Y3S2 320 aaPredicted RBP21.84■■□□□ 1.09
COL7A1-202ENST00000422991 TCERG1O14776 1098 aaKnown RBP21.83■■□□□ 1.09
COL7A1-202ENST00000422991 TRAPPC3LQ5T215 181 aa21.83■■□□□ 1.09
COL7A1-202ENST00000422991 COL23A1Q86Y22 540 aaPredicted RBP21.83■■□□□ 1.09
COL7A1-202ENST00000422991 ARHGEF1Q92888 912 aaKnown RBP21.82■■□□□ 1.08
COL7A1-202ENST00000422991 HYPKQ9NX55 129 aa21.82■■□□□ 1.08
COL7A1-202ENST00000422991 A0A087WZG4 1122 aa21.81■■□□□ 1.08
COL7A1-202ENST00000422991 ARFGEF2Q9Y6D5 1785 aa21.8■■□□□ 1.08
COL7A1-202ENST00000422991 ZBTB7AO95365 584 aa21.8■■□□□ 1.08
COL7A1-202ENST00000422991 ALDH1L2Q3SY69 923 aa21.8■■□□□ 1.08
COL7A1-202ENST00000422991 NPM2Q86SE8 214 aaKnown RBP21.8■■□□□ 1.08
COL7A1-202ENST00000422991 SSH1Q8WYL5 1049 aa21.8■■□□□ 1.08
COL7A1-202ENST00000422991 USP42Q9H9J4 1324 aaKnown RBP21.8■■□□□ 1.08
COL7A1-202ENST00000422991 SLC4A2P04920 1241 aa21.79■■□□□ 1.08
COL7A1-202ENST00000422991 RFC4P35249 363 aa21.79■■□□□ 1.08
COL7A1-202ENST00000422991 DZIP3Q86Y13 1208 aaKnown RBP21.79■■□□□ 1.08
COL7A1-202ENST00000422991 XAGE3Q8WTP9 111 aa21.79■■□□□ 1.08
COL7A1-202ENST00000422991 MTFR1LQ9H019 292 aa21.79■■□□□ 1.08
COL7A1-202ENST00000422991 PPP1R1BQ9UD71 204 aaPredicted RBP21.79■■□□□ 1.08
COL7A1-202ENST00000422991 COL24A1Q17RW2 1714 aa21.79■■□□□ 1.08
COL7A1-202ENST00000422991 NUP98P52948 1817 aa21.78■■□□□ 1.08
COL7A1-202ENST00000422991 RARSP54136 660 aaKnown RBP21.78■■□□□ 1.08
COL7A1-202ENST00000422991 TTLL7Q6ZT98 887 aa21.78■■□□□ 1.08
COL7A1-202ENST00000422991 PHAXQ9H814 394 aaKnown RBP21.78■■□□□ 1.08
COL7A1-202ENST00000422991 NARFQ9UHQ1 456 aa21.78■■□□□ 1.08
COL7A1-202ENST00000422991 ANKRD36CQ5JPF3 1778 aa21.77■■□□□ 1.08
COL7A1-202ENST00000422991 MSH5O43196 834 aa21.77■■□□□ 1.08
COL7A1-202ENST00000422991 CAMTA2O94983 1202 aa21.77■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms