RNA–Protein interactions for RNA: ENST00000422344.5

TRAF4-204, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 631 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-204ENST00000422344 N4BP2Q86UW6 1770 aaPredicted RBP29.03■■■□□ 2.24
TRAF4-204ENST00000422344 MYH14Q7Z406 1995 aaKnown RBP29.02■■■□□ 2.24
TRAF4-204ENST00000422344 BTBD11A6QL63 1104 aa29.02■■■□□ 2.24
TRAF4-204ENST00000422344 A0A0G2JLW4 131 aa29.01■■■□□ 2.23
TRAF4-204ENST00000422344 CYP19A1P11511 503 aaPredicted RBP29.01■■■□□ 2.23
TRAF4-204ENST00000422344 TGFB2P61812 414 aa29.01■■■□□ 2.23
TRAF4-204ENST00000422344 INTS5Q6P9B9 1019 aaKnown RBP29.01■■■□□ 2.23
TRAF4-204ENST00000422344 BCS1LQ9Y276 419 aa29.01■■■□□ 2.23
TRAF4-204ENST00000422344 KIAA1551Q9HCM1 1747 aa29■■■□□ 2.23
TRAF4-204ENST00000422344 ZNF496Q96IT1 587 aaPredicted RBP28.99■■■□□ 2.23
TRAF4-204ENST00000422344 FMNL2Q96PY5 1086 aa28.99■■■□□ 2.23
TRAF4-204ENST00000422344 PLEKHF1Q96S99 279 aa28.99■■■□□ 2.23
TRAF4-204ENST00000422344 KIF3CO14782 793 aa28.98■■■□□ 2.23
TRAF4-204ENST00000422344 STARD3NLO95772 234 aa28.98■■■□□ 2.23
TRAF4-204ENST00000422344 GYS1P13807 737 aa28.98■■■□□ 2.23
TRAF4-204ENST00000422344 DCTN1Q14203 1278 aa28.98■■■□□ 2.23
TRAF4-204ENST00000422344 HEG1Q9ULI3 1381 aa28.98■■■□□ 2.23
TRAF4-204ENST00000422344 C4AP0C0L4 1744 aa28.97■■■□□ 2.23
TRAF4-204ENST00000422344 C10orf71Q711Q0 1435 aa28.97■■■□□ 2.23
TRAF4-204ENST00000422344 PRKRIP1Q9H875 184 aaPredicted RBP28.97■■■□□ 2.23
TRAF4-204ENST00000422344 NFE2L2Q16236 605 aa28.96■■■□□ 2.23
TRAF4-204ENST00000422344 IFFO2Q5TF58 517 aa28.96■■■□□ 2.23
TRAF4-204ENST00000422344 TEX13AQ9BXU3 409 aaPredicted RBP28.96■■■□□ 2.23
TRAF4-204ENST00000422344 PARP3Q9Y6F1 533 aa28.96■■■□□ 2.23
TRAF4-204ENST00000422344 DPEP1P16444 411 aa28.95■■■□□ 2.22
TRAF4-204ENST00000422344 SOS1Q07889 1333 aaPredicted RBP28.94■■■□□ 2.22
TRAF4-204ENST00000422344 WDR43Q15061 677 aaKnown RBP eCLIP28.94■■■□□ 2.22
TRAF4-204ENST00000422344 ARHGAP27Q6ZUM4 889 aa28.94■■■□□ 2.22
TRAF4-204ENST00000422344 ZBTB1Q9Y2K1 713 aa28.94■■■□□ 2.22
TRAF4-204ENST00000422344 USP42Q9H9J4 1324 aaKnown RBP28.94■■■□□ 2.22
TRAF4-204ENST00000422344 KCNQ3O43525 872 aa28.92■■■□□ 2.22
TRAF4-204ENST00000422344 ZPR1O75312 459 aa28.92■■■□□ 2.22
TRAF4-204ENST00000422344 CANXP27824 592 aaKnown RBP28.92■■■□□ 2.22
TRAF4-204ENST00000422344 SRP68Q9UHB9 627 aaKnown RBP28.92■■■□□ 2.22
TRAF4-204ENST00000422344 DLG5Q8TDM6 1919 aa28.91■■■□□ 2.22
TRAF4-204ENST00000422344 TAF7Q15545 349 aaPredicted RBP28.91■■■□□ 2.22
TRAF4-204ENST00000422344 COL15A1P39059 1388 aa28.9■■■□□ 2.22
TRAF4-204ENST00000422344 ZNF316A6NFI3 1004 aaPredicted RBP28.9■■■□□ 2.22
TRAF4-204ENST00000422344 BRCA1P38398 1863 aaKnown RBP28.88■■■□□ 2.21
TRAF4-204ENST00000422344 PNISRQ8TF01 805 aaKnown RBP28.87■■■□□ 2.21
TRAF4-204ENST00000422344 KCNA3P22001 575 aa28.86■■■□□ 2.21
TRAF4-204ENST00000422344 FKBP8Q14318 412 aa28.86■■■□□ 2.21
TRAF4-204ENST00000422344 USPL1Q5W0Q7 1092 aa28.86■■■□□ 2.21
TRAF4-204ENST00000422344 NPM2Q86SE8 214 aaKnown RBP28.86■■■□□ 2.21
TRAF4-204ENST00000422344 A0A087WZG4 1122 aa28.85■■■□□ 2.21
TRAF4-204ENST00000422344 SNRPA1P09661 255 aaKnown RBP28.85■■■□□ 2.21
TRAF4-204ENST00000422344 RIPK4P57078 832 aa28.85■■■□□ 2.21
TRAF4-204ENST00000422344 NARFQ9UHQ1 456 aa28.85■■■□□ 2.21
TRAF4-204ENST00000422344 ZNF330Q9Y3S2 320 aaPredicted RBP28.85■■■□□ 2.21
TRAF4-204ENST00000422344 CCDC146Q8IYE0 955 aa28.84■■■□□ 2.21
TRAF4-204ENST00000422344 THUMPD2Q9BTF0 503 aaKnown RBP28.84■■■□□ 2.21
TRAF4-204ENST00000422344 LMOD3Q0VAK6 560 aa28.83■■■□□ 2.21
TRAF4-204ENST00000422344 MIS18AQ9NYP9 233 aa28.83■■■□□ 2.21
TRAF4-204ENST00000422344 PIM2Q9P1W9 311 aa28.83■■■□□ 2.21
TRAF4-204ENST00000422344 TOMM70O94826 608 aa28.82■■■□□ 2.2
TRAF4-204ENST00000422344 EIF5P55010 431 aaKnown RBP28.82■■■□□ 2.2
TRAF4-204ENST00000422344 DDR1Q08345 913 aa28.82■■■□□ 2.2
TRAF4-204ENST00000422344 NMRK2Q9NPI5 230 aa28.82■■■□□ 2.2
TRAF4-204ENST00000422344 ARFGEF1Q9Y6D6 1849 aa28.82■■■□□ 2.2
TRAF4-204ENST00000422344 A1BGP04217 495 aa28.81■■■□□ 2.2
TRAF4-204ENST00000422344 IL6STP40189 918 aaPredicted RBP28.81■■■□□ 2.2
TRAF4-204ENST00000422344 TMPOP42166 694 aaKnown RBP28.81■■■□□ 2.2
TRAF4-204ENST00000422344 C9orf131Q5VYM1 1079 aa28.81■■■□□ 2.2
TRAF4-204ENST00000422344 RUNDC1Q96C34 613 aa28.81■■■□□ 2.2
TRAF4-204ENST00000422344 APLP1P51693 650 aa28.8■■■□□ 2.2
TRAF4-204ENST00000422344 ADAMTS8Q9UP79 889 aa28.8■■■□□ 2.2
TRAF4-204ENST00000422344 USP16Q9Y5T5 823 aa28.8■■■□□ 2.2
TRAF4-204ENST00000422344 DALRD3Q5D0E6 543 aaKnown RBP28.79■■■□□ 2.2
TRAF4-204ENST00000422344 PRAMEF22A3QJZ6 481 aa28.78■■■□□ 2.2
TRAF4-204ENST00000422344 RRP7AQ9Y3A4 280 aaKnown RBP28.78■■■□□ 2.2
TRAF4-204ENST00000422344 KDM3BQ7LBC6 1761 aa28.78■■■□□ 2.2
TRAF4-204ENST00000422344 CHRNA5P30532 468 aa28.77■■■□□ 2.2
TRAF4-204ENST00000422344 NEUROD2Q15784 382 aa28.77■■■□□ 2.2
TRAF4-204ENST00000422344 TM4SF1P30408 202 aa28.76■■■□□ 2.19
TRAF4-204ENST00000422344 POLRMTO00411 1230 aaKnown RBP28.75■■■□□ 2.19
TRAF4-204ENST00000422344 TBC1D2BQ9UPU7 963 aa28.75■■■□□ 2.19
TRAF4-204ENST00000422344 NFIXQ14938 502 aa28.74■■■□□ 2.19
TRAF4-204ENST00000422344 BCL2L12Q9HB09 334 aa28.74■■■□□ 2.19
TRAF4-204ENST00000422344 TSPYL4Q9UJ04 414 aa28.74■■■□□ 2.19
TRAF4-204ENST00000422344 PIP4K2AP48426 406 aaPredicted RBP28.73■■■□□ 2.19
TRAF4-204ENST00000422344 EIF4A1P60842 406 aaKnown RBP28.72■■■□□ 2.19
TRAF4-204ENST00000422344 C16orf71Q8IYS4 520 aaPredicted RBP28.72■■■□□ 2.19
TRAF4-204ENST00000422344 RNF181Q9P0P0 153 aa28.72■■■□□ 2.19
TRAF4-204ENST00000422344 SCN7AQ01118 1682 aa28.71■■■□□ 2.19
TRAF4-204ENST00000422344 LAMB4A4D0S4 1761 aa28.71■■■□□ 2.19
TRAF4-204ENST00000422344 ANP32CO43423 234 aa28.71■■■□□ 2.19
TRAF4-204ENST00000422344 BICDL1Q6ZP65 573 aa28.71■■■□□ 2.19
TRAF4-204ENST00000422344 DZIP3Q86Y13 1208 aaKnown RBP28.71■■■□□ 2.19
TRAF4-204ENST00000422344 DNAJC5GQ8N7S2 189 aa28.7■■■□□ 2.18
TRAF4-204ENST00000422344 RBM46Q8TBY0 533 aaKnown RBP28.69■■■□□ 2.18
TRAF4-204ENST00000422344 BABAM1Q9NWV8 329 aa28.69■■■□□ 2.18
TRAF4-204ENST00000422344 SERPINB2P05120 415 aa28.68■■■□□ 2.18
TRAF4-204ENST00000422344 KDM2BQ8NHM5 1336 aa28.68■■■□□ 2.18
TRAF4-204ENST00000422344 SBF1O95248 1867 aa28.67■■■□□ 2.18
TRAF4-204ENST00000422344 NBPF26B4DH59 902 aa28.66■■■□□ 2.18
TRAF4-204ENST00000422344 CAMTA2O94983 1202 aa28.66■■■□□ 2.18
TRAF4-204ENST00000422344 TBC1D9BQ66K14 1250 aa28.66■■■□□ 2.18
TRAF4-204ENST00000422344 NBPF10Q6P3W6 841 aaKnown RBP28.66■■■□□ 2.18
TRAF4-204ENST00000422344 NBPF15Q8N660 670 aa28.66■■■□□ 2.18
TRAF4-204ENST00000422344 AFDNP55196 1824 aaKnown RBP28.66■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 99.2 ms