RNA–Protein interactions for RNA: ENST00000417508.1

VPS16-204, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS16, Length 819 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-204ENST00000417508 COL15A1P39059 1388 aa24.57■■□□□ 1.52
VPS16-204ENST00000417508 A0A087WZG4 1122 aa24.57■■□□□ 1.52
VPS16-204ENST00000417508 HTATSF1O43719 755 aaKnown RBP24.57■■□□□ 1.52
VPS16-204ENST00000417508 DPEP1P16444 411 aa24.57■■□□□ 1.52
VPS16-204ENST00000417508 RTF1Q92541 710 aaKnown RBP24.57■■□□□ 1.52
VPS16-204ENST00000417508 FMNL2Q96PY5 1086 aa24.57■■□□□ 1.52
VPS16-204ENST00000417508 WWC3Q9ULE0 1092 aa24.57■■□□□ 1.52
VPS16-204ENST00000417508 SIPA1L3O60292 1781 aaPredicted RBP24.57■■□□□ 1.52
VPS16-204ENST00000417508 HEG1Q9ULI3 1381 aa24.56■■□□□ 1.52
VPS16-204ENST00000417508 GIGYF1O75420 1035 aaPredicted RBP24.56■■□□□ 1.52
VPS16-204ENST00000417508 C1QTNF8P60827 252 aa24.56■■□□□ 1.52
VPS16-204ENST00000417508 DDR1Q08345 913 aa24.56■■□□□ 1.52
VPS16-204ENST00000417508 N4BP2Q86UW6 1770 aaPredicted RBP24.56■■□□□ 1.52
VPS16-204ENST00000417508 BTBD11A6QL63 1104 aa24.55■■□□□ 1.52
VPS16-204ENST00000417508 POLRMTO00411 1230 aaKnown RBP24.55■■□□□ 1.52
VPS16-204ENST00000417508 CANXP27824 592 aaKnown RBP24.55■■□□□ 1.52
VPS16-204ENST00000417508 EIF5P55010 431 aaKnown RBP24.55■■□□□ 1.52
VPS16-204ENST00000417508 BCS1LQ9Y276 419 aa24.55■■□□□ 1.52
VPS16-204ENST00000417508 KIAA1551Q9HCM1 1747 aa24.55■■□□□ 1.52
VPS16-204ENST00000417508 PIM2Q9P1W9 311 aa24.54■■□□□ 1.52
VPS16-204ENST00000417508 NEFMP07197 916 aa24.53■■□□□ 1.52
VPS16-204ENST00000417508 KCNA3P22001 575 aa24.53■■□□□ 1.52
VPS16-204ENST00000417508 ADCY9O60503 1353 aa24.52■■□□□ 1.52
VPS16-204ENST00000417508 ATP10DQ9P241 1426 aa24.52■■□□□ 1.52
VPS16-204ENST00000417508 IL6STP40189 918 aaPredicted RBP24.51■■□□□ 1.51
VPS16-204ENST00000417508 NFIXQ14938 502 aa24.51■■□□□ 1.51
VPS16-204ENST00000417508 NPM2Q86SE8 214 aaKnown RBP24.5■■□□□ 1.51
VPS16-204ENST00000417508 PNNQ9H307 717 aaKnown RBP24.5■■□□□ 1.51
VPS16-204ENST00000417508 BCL2L12Q9HB09 334 aa24.5■■□□□ 1.51
VPS16-204ENST00000417508 GPBP1L1Q9HC44 474 aaPredicted RBP24.5■■□□□ 1.51
VPS16-204ENST00000417508 BRCA1P38398 1863 aaKnown RBP24.49■■□□□ 1.51
VPS16-204ENST00000417508 DALRD3Q5D0E6 543 aaKnown RBP24.48■■□□□ 1.51
VPS16-204ENST00000417508 ARHGAP27Q6ZUM4 889 aa24.48■■□□□ 1.51
VPS16-204ENST00000417508 MCM10Q7L590 875 aa24.48■■□□□ 1.51
VPS16-204ENST00000417508 KCNQ3O43525 872 aa24.47■■□□□ 1.51
VPS16-204ENST00000417508 SERPINB2P05120 415 aa24.47■■□□□ 1.51
VPS16-204ENST00000417508 SNRPA1P09661 255 aaKnown RBP24.46■■□□□ 1.51
VPS16-204ENST00000417508 TAF7Q15545 349 aaPredicted RBP24.46■■□□□ 1.51
VPS16-204ENST00000417508 ARFGEF1Q9Y6D6 1849 aa24.46■■□□□ 1.51
VPS16-204ENST00000417508 A1BGP04217 495 aa24.45■■□□□ 1.5
VPS16-204ENST00000417508 RALBP1Q15311 655 aa24.45■■□□□ 1.5
VPS16-204ENST00000417508 USP16Q9Y5T5 823 aa24.44■■□□□ 1.5
VPS16-204ENST00000417508 AFDNP55196 1824 aaKnown RBP24.44■■□□□ 1.5
VPS16-204ENST00000417508 NRXN2Q9P2S2 1712 aa24.44■■□□□ 1.5
VPS16-204ENST00000417508 CHRNA5P30532 468 aa24.43■■□□□ 1.5
VPS16-204ENST00000417508 TBC1D2BQ9UPU7 963 aa24.43■■□□□ 1.5
VPS16-204ENST00000417508 DCTN1Q14203 1278 aa24.42■■□□□ 1.5
VPS16-204ENST00000417508 PNISRQ8TF01 805 aaKnown RBP24.42■■□□□ 1.5
VPS16-204ENST00000417508 PLEKHF1Q96S99 279 aa24.42■■□□□ 1.5
VPS16-204ENST00000417508 PDZRN3Q9UPQ7 1066 aa24.42■■□□□ 1.5
VPS16-204ENST00000417508 ZNF330Q9Y3S2 320 aaPredicted RBP24.42■■□□□ 1.5
VPS16-204ENST00000417508 BICDL1Q6ZP65 573 aa24.4■■□□□ 1.5
VPS16-204ENST00000417508 SENP3-EIF4A1A0A087X0R7 540 aa24.39■■□□□ 1.49
VPS16-204ENST00000417508 NFE2L2Q16236 605 aa24.39■■□□□ 1.49
VPS16-204ENST00000417508 TBC1D9BQ66K14 1250 aa24.39■■□□□ 1.49
VPS16-204ENST00000417508 ZNF526Q8TF50 670 aaPredicted RBP24.39■■□□□ 1.49
VPS16-204ENST00000417508 H0YIN7 160 aa24.38■■□□□ 1.49
VPS16-204ENST00000417508 CAMTA2O94983 1202 aa24.38■■□□□ 1.49
VPS16-204ENST00000417508 CLEC4GQ6UXB4 293 aa24.38■■□□□ 1.49
VPS16-204ENST00000417508 DZIP3Q86Y13 1208 aaKnown RBP24.38■■□□□ 1.49
VPS16-204ENST00000417508 SETDB2Q96T68 719 aa24.38■■□□□ 1.49
VPS16-204ENST00000417508 RGL2O15211 777 aa24.37■■□□□ 1.49
VPS16-204ENST00000417508 TTLL6Q8N841 843 aa24.37■■□□□ 1.49
VPS16-204ENST00000417508 BRIP1Q9BX63 1249 aa24.37■■□□□ 1.49
VPS16-204ENST00000417508 DLG5Q8TDM6 1919 aa24.37■■□□□ 1.49
VPS16-204ENST00000417508 MAPK8IP3Q9UPT6 1336 aa24.36■■□□□ 1.49
VPS16-204ENST00000417508 PDE6BP35913 854 aa24.36■■□□□ 1.49
VPS16-204ENST00000417508 C2CD5Q86YS7 1000 aa24.36■■□□□ 1.49
VPS16-204ENST00000417508 CARMIL3Q8ND23 1372 aa24.36■■□□□ 1.49
VPS16-204ENST00000417508 PRAMEF22A3QJZ6 481 aa24.35■■□□□ 1.49
VPS16-204ENST00000417508 DDX10Q13206 875 aaKnown RBP24.35■■□□□ 1.49
VPS16-204ENST00000417508 C9orf131Q5VYM1 1079 aa24.35■■□□□ 1.49
VPS16-204ENST00000417508 SCN7AQ01118 1682 aa24.34■■□□□ 1.49
VPS16-204ENST00000417508 ZNF652Q9Y2D9 606 aa24.34■■□□□ 1.49
VPS16-204ENST00000417508 MIS18AQ9NYP9 233 aa24.33■■□□□ 1.49
VPS16-204ENST00000417508 PRR5LQ6MZQ0 368 aa24.32■■□□□ 1.48
VPS16-204ENST00000417508 DLEC1Q9Y238 1755 aa24.31■■□□□ 1.48
VPS16-204ENST00000417508 KIF3CO14782 793 aa24.31■■□□□ 1.48
VPS16-204ENST00000417508 NBPF26B4DH59 902 aa24.3■■□□□ 1.48
VPS16-204ENST00000417508 NPHP1O15259 732 aa24.3■■□□□ 1.48
VPS16-204ENST00000417508 PIP4K2AP48426 406 aaPredicted RBP24.3■■□□□ 1.48
VPS16-204ENST00000417508 NBPF10Q6P3W6 841 aaKnown RBP24.3■■□□□ 1.48
VPS16-204ENST00000417508 NBPF15Q8N660 670 aa24.3■■□□□ 1.48
VPS16-204ENST00000417508 CNBD1Q8NA66 436 aa24.3■■□□□ 1.48
VPS16-204ENST00000417508 MYBBP1AQ9BQG0 1328 aaKnown RBP24.3■■□□□ 1.48
VPS16-204ENST00000417508 SBF1O95248 1867 aa24.3■■□□□ 1.48
VPS16-204ENST00000417508 EIF4A1P60842 406 aaKnown RBP24.29■■□□□ 1.48
VPS16-204ENST00000417508 ST5P78524 1137 aa24.29■■□□□ 1.48
VPS16-204ENST00000417508 RNF181Q9P0P0 153 aa24.29■■□□□ 1.48
VPS16-204ENST00000417508 BCORQ6W2J9 1755 aa24.28■■□□□ 1.48
VPS16-204ENST00000417508 RIPK4P57078 832 aa24.27■■□□□ 1.48
VPS16-204ENST00000417508 ZNF622Q969S3 477 aaKnown RBP eCLIP24.27■■□□□ 1.48
VPS16-204ENST00000417508 BABAM1Q9NWV8 329 aa24.27■■□□□ 1.48
VPS16-204ENST00000417508 ZC3H4Q9UPT8 1303 aaKnown RBP24.27■■□□□ 1.48
VPS16-204ENST00000417508 KDM3BQ7LBC6 1761 aa24.26■■□□□ 1.47
VPS16-204ENST00000417508 ANKRD31Q8N7Z5 1873 aa24.26■■□□□ 1.47
VPS16-204ENST00000417508 LMOD3Q0VAK6 560 aa24.26■■□□□ 1.47
VPS16-204ENST00000417508 TPTE2Q6XPS3 522 aa24.26■■□□□ 1.47
VPS16-204ENST00000417508 NBPF5PQ86XG9 351 aaPredicted RBP24.26■■□□□ 1.47
VPS16-204ENST00000417508 KDM2BQ8NHM5 1336 aa24.26■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms