RNA–Protein interactions for RNA: ENST00000417088.2

RPS28-201, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 334 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-201ENST00000417088 CHRNA5P30532 468 aa19.99■□□□□ 0.79
RPS28-201ENST00000417088 NARFQ9UHQ1 456 aa19.99■□□□□ 0.79
RPS28-201ENST00000417088 VIRMAQ69YN4 1812 aaKnown RBP19.99■□□□□ 0.79
RPS28-201ENST00000417088 COL15A1P39059 1388 aa19.98■□□□□ 0.79
RPS28-201ENST00000417088 DALRD3Q5D0E6 543 aaKnown RBP19.98■□□□□ 0.79
RPS28-201ENST00000417088 IL17REQ8NFR9 667 aa19.98■□□□□ 0.79
RPS28-201ENST00000417088 NFIXQ14938 502 aa19.97■□□□□ 0.79
RPS28-201ENST00000417088 BCL2L12Q9HB09 334 aa19.97■□□□□ 0.79
RPS28-201ENST00000417088 GNAT3A8MTJ3 354 aa19.96■□□□□ 0.79
RPS28-201ENST00000417088 C9orf131Q5VYM1 1079 aa19.96■□□□□ 0.79
RPS28-201ENST00000417088 GAS2L2Q8NHY3 880 aa19.96■□□□□ 0.79
RPS28-201ENST00000417088 ARFGEF1Q9Y6D6 1849 aa19.96■□□□□ 0.79
RPS28-201ENST00000417088 CANXP27824 592 aaKnown RBP19.95■□□□□ 0.78
RPS28-201ENST00000417088 TTC5Q8N0Z6 440 aa19.95■□□□□ 0.78
RPS28-201ENST00000417088 UBR2Q8IWV8 1755 aa19.95■□□□□ 0.78
RPS28-201ENST00000417088 TEFQ10587 303 aa19.94■□□□□ 0.78
RPS28-201ENST00000417088 ZNF496Q96IT1 587 aaPredicted RBP19.94■□□□□ 0.78
RPS28-201ENST00000417088 STARD3NLO95772 234 aa19.93■□□□□ 0.78
RPS28-201ENST00000417088 SERPINB2P05120 415 aa19.93■□□□□ 0.78
RPS28-201ENST00000417088 EIF5P55010 431 aaKnown RBP19.93■□□□□ 0.78
RPS28-201ENST00000417088 ZNF790Q6PG37 636 aa19.93■□□□□ 0.78
RPS28-201ENST00000417088 NMRK2Q9NPI5 230 aa19.93■□□□□ 0.78
RPS28-201ENST00000417088 TOMM70O94826 608 aa19.91■□□□□ 0.78
RPS28-201ENST00000417088 PHACTR3Q96KR7 559 aa19.91■□□□□ 0.78
RPS28-201ENST00000417088 HEG1Q9ULI3 1381 aa19.91■□□□□ 0.78
RPS28-201ENST00000417088 NRXN2Q9P2S2 1712 aa19.9■□□□□ 0.78
RPS28-201ENST00000417088 AFDNP55196 1824 aaKnown RBP19.9■□□□□ 0.78
RPS28-201ENST00000417088 A0A087WZG4 1122 aa19.9■□□□□ 0.78
RPS28-201ENST00000417088 PRKAR2BP31323 418 aa19.9■□□□□ 0.78
RPS28-201ENST00000417088 TEX13AQ9BXU3 409 aaPredicted RBP19.9■□□□□ 0.78
RPS28-201ENST00000417088 RNF181Q9P0P0 153 aa19.9■□□□□ 0.78
RPS28-201ENST00000417088 CEMIPQ8WUJ3 1361 aa19.9■□□□□ 0.78
RPS28-201ENST00000417088 CFAP53Q96M91 514 aa19.89■□□□□ 0.77
RPS28-201ENST00000417088 RSPH6AQ9H0K4 717 aa19.89■□□□□ 0.77
RPS28-201ENST00000417088 BICDL1Q6ZP65 573 aa19.88■□□□□ 0.77
RPS28-201ENST00000417088 SIPA1L3O60292 1781 aaPredicted RBP19.88■□□□□ 0.77
RPS28-201ENST00000417088 CARMIL3Q8ND23 1372 aa19.87■□□□□ 0.77
RPS28-201ENST00000417088 FMNL2Q96PY5 1086 aa19.87■□□□□ 0.77
RPS28-201ENST00000417088 KCNQ3O43525 872 aa19.86■□□□□ 0.77
RPS28-201ENST00000417088 A1BGP04217 495 aa19.86■□□□□ 0.77
RPS28-201ENST00000417088 IL6STP40189 918 aaPredicted RBP19.86■□□□□ 0.77
RPS28-201ENST00000417088 TBC1D9BQ66K14 1250 aa19.86■□□□□ 0.77
RPS28-201ENST00000417088 C2CD5Q86YS7 1000 aa19.86■□□□□ 0.77
RPS28-201ENST00000417088 TBC1D2BQ9UPU7 963 aa19.86■□□□□ 0.77
RPS28-201ENST00000417088 NUDCQ9Y266 331 aa19.86■□□□□ 0.77
RPS28-201ENST00000417088 BTBD11A6QL63 1104 aa19.85■□□□□ 0.77
RPS28-201ENST00000417088 PPP2R1AP30153 589 aa19.85■□□□□ 0.77
RPS28-201ENST00000417088 RASSF7Q02833 373 aa19.85■□□□□ 0.77
RPS28-201ENST00000417088 TTLL6Q8N841 843 aa19.85■□□□□ 0.77
RPS28-201ENST00000417088 ZNF330Q9Y3S2 320 aaPredicted RBP19.85■□□□□ 0.77
RPS28-201ENST00000417088 SBF1O95248 1867 aa19.84■□□□□ 0.77
RPS28-201ENST00000417088 KDM2BQ8NHM5 1336 aa19.84■□□□□ 0.77
RPS28-201ENST00000417088 H0YIN7 160 aa19.84■□□□□ 0.77
RPS28-201ENST00000417088 U2AF1L5P0DN76 240 aaPredicted RBP19.84■□□□□ 0.77
RPS28-201ENST00000417088 APLP1P51693 650 aa19.84■□□□□ 0.77
RPS28-201ENST00000417088 U2AF1Q01081 240 aaKnown RBP eCLIP19.84■□□□□ 0.77
RPS28-201ENST00000417088 RBM46Q8TBY0 533 aaKnown RBP19.84■□□□□ 0.77
RPS28-201ENST00000417088 PRELPP51888 382 aa19.82■□□□□ 0.76
RPS28-201ENST00000417088 C16orf71Q8IYS4 520 aaPredicted RBP19.82■□□□□ 0.76
RPS28-201ENST00000417088 RRAGCQ9HB90 399 aa19.82■□□□□ 0.76
RPS28-201ENST00000417088 USP16Q9Y5T5 823 aa19.82■□□□□ 0.76
RPS28-201ENST00000417088 DLEC1Q9Y238 1755 aa19.82■□□□□ 0.76
RPS28-201ENST00000417088 CAMTA2O94983 1202 aa19.81■□□□□ 0.76
RPS28-201ENST00000417088 PRR5LQ6MZQ0 368 aa19.81■□□□□ 0.76
RPS28-201ENST00000417088 CCDC24Q8N4L8 307 aa19.81■□□□□ 0.76
RPS28-201ENST00000417088 BRIP1Q9BX63 1249 aa19.81■□□□□ 0.76
RPS28-201ENST00000417088 SCN7AQ01118 1682 aa19.81■□□□□ 0.76
RPS28-201ENST00000417088 LMNB1P20700 586 aa19.8■□□□□ 0.76
RPS28-201ENST00000417088 MCM10Q7L590 875 aa19.8■□□□□ 0.76
RPS28-201ENST00000417088 RTF1Q92541 710 aaKnown RBP19.8■□□□□ 0.76
RPS28-201ENST00000417088 ZC3H4Q9UPT8 1303 aaKnown RBP19.79■□□□□ 0.76
RPS28-201ENST00000417088 PRAMEF22A3QJZ6 481 aa19.79■□□□□ 0.76
RPS28-201ENST00000417088 NFKBIEO00221 500 aa19.79■□□□□ 0.76
RPS28-201ENST00000417088 PDE6BP35913 854 aa19.79■□□□□ 0.76
RPS28-201ENST00000417088 NPM2Q86SE8 214 aaKnown RBP19.79■□□□□ 0.76
RPS28-201ENST00000417088 DZIP3Q86Y13 1208 aaKnown RBP19.79■□□□□ 0.76
RPS28-201ENST00000417088 DNAJC5GQ8N7S2 189 aa19.79■□□□□ 0.76
RPS28-201ENST00000417088 ANKRD31Q8N7Z5 1873 aa19.78■□□□□ 0.76
RPS28-201ENST00000417088 PIP4K2AP48426 406 aaPredicted RBP19.78■□□□□ 0.76
RPS28-201ENST00000417088 FSTL1Q12841 308 aa19.78■□□□□ 0.76
RPS28-201ENST00000417088 ZNF622Q969S3 477 aaKnown RBP eCLIP19.78■□□□□ 0.76
RPS28-201ENST00000417088 SETDB2Q96T68 719 aa19.78■□□□□ 0.76
RPS28-201ENST00000417088 PDZRN3Q9UPQ7 1066 aa19.78■□□□□ 0.76
RPS28-201ENST00000417088 SNRPA1P09661 255 aaKnown RBP19.77■□□□□ 0.76
RPS28-201ENST00000417088 DCTN1Q14203 1278 aa19.77■□□□□ 0.76
RPS28-201ENST00000417088 IFFO2Q5TF58 517 aa19.77■□□□□ 0.76
RPS28-201ENST00000417088 HTATSF1O43719 755 aaKnown RBP19.76■□□□□ 0.75
RPS28-201ENST00000417088 GLTPD2A6NH11 291 aa19.75■□□□□ 0.75
RPS28-201ENST00000417088 C21orf2O43822 256 aa19.75■□□□□ 0.75
RPS28-201ENST00000417088 CNBD1Q8NA66 436 aa19.75■□□□□ 0.75
RPS28-201ENST00000417088 TNRC6CQ9HCJ0 1690 aaKnown RBP19.75■□□□□ 0.75
RPS28-201ENST00000417088 ZNF219Q9P2Y4 722 aaPredicted RBP19.74■□□□□ 0.75
RPS28-201ENST00000417088 NBPF26B4DH59 902 aa19.73■□□□□ 0.75
RPS28-201ENST00000417088 NPHP1O15259 732 aa19.73■□□□□ 0.75
RPS28-201ENST00000417088 HTRA3P83110 453 aa19.73■□□□□ 0.75
RPS28-201ENST00000417088 NBPF10Q6P3W6 841 aaKnown RBP19.73■□□□□ 0.75
RPS28-201ENST00000417088 CLEC4GQ6UXB4 293 aa19.73■□□□□ 0.75
RPS28-201ENST00000417088 NBPF15Q8N660 670 aa19.73■□□□□ 0.75
RPS28-201ENST00000417088 COL11A2P13942 1736 aaPredicted RBP19.73■□□□□ 0.75
RPS28-201ENST00000417088 SRGNP10124 158 aa19.72■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms