RNA–Protein interactions for RNA: ENST00000414419.6

RFFL-204, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 559 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-204ENST00000414419 GYS1P13807 737 aa14.79□□□□□ -0.04
RFFL-204ENST00000414419 CANXP27824 592 aaKnown RBP14.79□□□□□ -0.04
RFFL-204ENST00000414419 NLGN2Q8NFZ4 835 aa14.79□□□□□ -0.04
RFFL-204ENST00000414419 CHD4Q14839 1912 aa14.78□□□□□ -0.04
RFFL-204ENST00000414419 SOS1Q07889 1333 aaPredicted RBP14.78□□□□□ -0.04
RFFL-204ENST00000414419 USP42Q9H9J4 1324 aaKnown RBP14.78□□□□□ -0.04
RFFL-204ENST00000414419 KCNQ3O43525 872 aa14.78□□□□□ -0.04
RFFL-204ENST00000414419 ZBTB1Q9Y2K1 713 aa14.78□□□□□ -0.04
RFFL-204ENST00000414419 PARP3Q9Y6F1 533 aa14.78□□□□□ -0.04
RFFL-204ENST00000414419 COL15A1P39059 1388 aa14.77□□□□□ -0.04
RFFL-204ENST00000414419 RIPK4P57078 832 aa14.77□□□□□ -0.05
RFFL-204ENST00000414419 PNISRQ8TF01 805 aaKnown RBP14.77□□□□□ -0.05
RFFL-204ENST00000414419 SRP68Q9UHB9 627 aaKnown RBP14.77□□□□□ -0.05
RFFL-204ENST00000414419 A0A087WZG4 1122 aa14.76□□□□□ -0.05
RFFL-204ENST00000414419 SNRPA1P09661 255 aaKnown RBP14.76□□□□□ -0.05
RFFL-204ENST00000414419 YY1P25490 414 aa14.76□□□□□ -0.05
RFFL-204ENST00000414419 LMOD3Q0VAK6 560 aa14.76□□□□□ -0.05
RFFL-204ENST00000414419 USPL1Q5W0Q7 1092 aa14.76□□□□□ -0.05
RFFL-204ENST00000414419 ZNF330Q9Y3S2 320 aaPredicted RBP14.76□□□□□ -0.05
RFFL-204ENST00000414419 CCDC146Q8IYE0 955 aa14.75□□□□□ -0.05
RFFL-204ENST00000414419 NARFQ9UHQ1 456 aa14.75□□□□□ -0.05
RFFL-204ENST00000414419 TMPOP42166 694 aaKnown RBP14.74□□□□□ -0.05
RFFL-204ENST00000414419 FKBP8Q14318 412 aa14.74□□□□□ -0.05
RFFL-204ENST00000414419 NEUROD2Q15784 382 aa14.74□□□□□ -0.05
RFFL-204ENST00000414419 RUNDC1Q96C34 613 aa14.74□□□□□ -0.05
RFFL-204ENST00000414419 MIS18AQ9NYP9 233 aa14.74□□□□□ -0.05
RFFL-204ENST00000414419 ADAMTS8Q9UP79 889 aa14.74□□□□□ -0.05
RFFL-204ENST00000414419 GRIN3BO60391 1043 aa14.73□□□□□ -0.05
RFFL-204ENST00000414419 A1BGP04217 495 aa14.73□□□□□ -0.05
RFFL-204ENST00000414419 IL6STP40189 918 aaPredicted RBP14.73□□□□□ -0.05
RFFL-204ENST00000414419 EIF5P55010 431 aaKnown RBP14.73□□□□□ -0.05
RFFL-204ENST00000414419 THUMPD2Q9BTF0 503 aaKnown RBP14.73□□□□□ -0.05
RFFL-204ENST00000414419 USP16Q9Y5T5 823 aa14.73□□□□□ -0.05
RFFL-204ENST00000414419 KIF13BQ9NQT8 1826 aa14.72□□□□□ -0.05
RFFL-204ENST00000414419 KDM3BQ7LBC6 1761 aa14.72□□□□□ -0.05
RFFL-204ENST00000414419 ANP32CO43423 234 aa14.71□□□□□ -0.05
RFFL-204ENST00000414419 TGFB2P61812 414 aa14.71□□□□□ -0.05
RFFL-204ENST00000414419 RRP7AQ9Y3A4 280 aaKnown RBP14.71□□□□□ -0.05
RFFL-204ENST00000414419 N4BP2Q86UW6 1770 aaPredicted RBP14.7□□□□□ -0.06
RFFL-204ENST00000414419 PRAMEF22A3QJZ6 481 aa14.7□□□□□ -0.06
RFFL-204ENST00000414419 TM4SF1P30408 202 aa14.7□□□□□ -0.06
RFFL-204ENST00000414419 TSPYL4Q9UJ04 414 aa14.7□□□□□ -0.06
RFFL-204ENST00000414419 TBC1D2BQ9UPU7 963 aa14.7□□□□□ -0.06
RFFL-204ENST00000414419 YBX3P16989 372 aaKnown RBP eCLIP14.69□□□□□ -0.06
RFFL-204ENST00000414419 DDR1Q08345 913 aa14.69□□□□□ -0.06
RFFL-204ENST00000414419 WWC3Q9ULE0 1092 aa14.69□□□□□ -0.06
RFFL-204ENST00000414419 LAMB4A4D0S4 1761 aa14.69□□□□□ -0.06
RFFL-204ENST00000414419 AFDNP55196 1824 aaKnown RBP14.69□□□□□ -0.06
RFFL-204ENST00000414419 C10orf71Q711Q0 1435 aa14.68□□□□□ -0.06
RFFL-204ENST00000414419 A0A0G2JLW4 131 aa14.68□□□□□ -0.06
RFFL-204ENST00000414419 POLRMTO00411 1230 aaKnown RBP14.68□□□□□ -0.06
RFFL-204ENST00000414419 PIP4K2AP48426 406 aaPredicted RBP14.68□□□□□ -0.06
RFFL-204ENST00000414419 EIF4A1P60842 406 aaKnown RBP14.68□□□□□ -0.06
RFFL-204ENST00000414419 NFIXQ14938 502 aa14.68□□□□□ -0.06
RFFL-204ENST00000414419 BICDL1Q6ZP65 573 aa14.68□□□□□ -0.06
RFFL-204ENST00000414419 DZIP3Q86Y13 1208 aaKnown RBP14.68□□□□□ -0.06
RFFL-204ENST00000414419 BABAM1Q9NWV8 329 aa14.68□□□□□ -0.06
RFFL-204ENST00000414419 GIGYF1O75420 1035 aaPredicted RBP14.67□□□□□ -0.06
RFFL-204ENST00000414419 SERPINB2P05120 415 aa14.67□□□□□ -0.06
RFFL-204ENST00000414419 BCL2L12Q9HB09 334 aa14.67□□□□□ -0.06
RFFL-204ENST00000414419 GOLGB1Q14789 3259 aaKnown RBP14.67□□□□□ -0.06
RFFL-204ENST00000414419 SCN7AQ01118 1682 aa14.66□□□□□ -0.06
RFFL-204ENST00000414419 PXDNLA1KZ92 1463 aa14.66□□□□□ -0.06
RFFL-204ENST00000414419 NPHP1O15259 732 aa14.66□□□□□ -0.06
RFFL-204ENST00000414419 DPEP1P16444 411 aa14.66□□□□□ -0.06
RFFL-204ENST00000414419 ZNF652Q9Y2D9 606 aa14.66□□□□□ -0.06
RFFL-204ENST00000414419 LAS1LQ9Y4W2 734 aaKnown RBP14.66□□□□□ -0.06
RFFL-204ENST00000414419 UTRNP46939 3433 aa14.65□□□□□ -0.06
RFFL-204ENST00000414419 CAMTA2O94983 1202 aa14.65□□□□□ -0.06
RFFL-204ENST00000414419 TBC1D9BQ66K14 1250 aa14.65□□□□□ -0.06
RFFL-204ENST00000414419 SETDB2Q96T68 719 aa14.65□□□□□ -0.06
RFFL-204ENST00000414419 BCS1LQ9Y276 419 aa14.65□□□□□ -0.06
RFFL-204ENST00000414419 KIAA1551Q9HCM1 1747 aa14.64□□□□□ -0.07
RFFL-204ENST00000414419 NBPF26B4DH59 902 aa14.64□□□□□ -0.07
RFFL-204ENST00000414419 APAF1O14727 1248 aa14.64□□□□□ -0.07
RFFL-204ENST00000414419 NBPF10Q6P3W6 841 aaKnown RBP14.64□□□□□ -0.07
RFFL-204ENST00000414419 NGEFQ8N5V2 710 aa14.64□□□□□ -0.07
RFFL-204ENST00000414419 NBPF15Q8N660 670 aa14.64□□□□□ -0.07
RFFL-204ENST00000414419 MRS2Q9HD23 443 aa14.64□□□□□ -0.07
RFFL-204ENST00000414419 PIM2Q9P1W9 311 aa14.64□□□□□ -0.07
RFFL-204ENST00000414419 TRIM35Q9UPQ4 493 aa14.64□□□□□ -0.07
RFFL-204ENST00000414419 BCORQ6W2J9 1755 aa14.64□□□□□ -0.07
RFFL-204ENST00000414419 BRCA1P38398 1863 aaKnown RBP14.63□□□□□ -0.07
RFFL-204ENST00000414419 CARMIL3Q8ND23 1372 aa14.63□□□□□ -0.07
RFFL-204ENST00000414419 CLEC4GQ6UXB4 293 aa14.63□□□□□ -0.07
RFFL-204ENST00000414419 NRXN2Q9P2S2 1712 aa14.63□□□□□ -0.07
RFFL-204ENST00000414419 MYL6BP14649 208 aa14.62□□□□□ -0.07
RFFL-204ENST00000414419 EIF2S2P20042 333 aaKnown RBP14.62□□□□□ -0.07
RFFL-204ENST00000414419 CALD1Q05682 793 aaKnown RBP14.62□□□□□ -0.07
RFFL-204ENST00000414419 CCDC184Q52MB2 194 aa14.62□□□□□ -0.07
RFFL-204ENST00000414419 CHL1O00533 1208 aa14.61□□□□□ -0.07
RFFL-204ENST00000414419 CHRNA5P30532 468 aa14.61□□□□□ -0.07
RFFL-204ENST00000414419 DALRD3Q5D0E6 543 aaKnown RBP14.61□□□□□ -0.07
RFFL-204ENST00000414419 KIF6Q6ZMV9 814 aa14.61□□□□□ -0.07
RFFL-204ENST00000414419 ERBB4Q15303 1308 aa14.61□□□□□ -0.07
RFFL-204ENST00000414419 NUP98P52948 1817 aa14.6□□□□□ -0.07
RFFL-204ENST00000414419 ARFGEF1Q9Y6D6 1849 aa14.6□□□□□ -0.07
RFFL-204ENST00000414419 H0YIN7 160 aa14.6□□□□□ -0.07
RFFL-204ENST00000414419 RGL2O15211 777 aa14.6□□□□□ -0.07
RFFL-204ENST00000414419 KCNA3P22001 575 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms