RNA–Protein interactions for RNA: ENST00000409783.6

PTCD3-203, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 587 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-203ENST00000409783 PHF14O94880 888 aa29.28■■■□□ 2.28
PTCD3-203ENST00000409783 SNRPA1P09661 255 aaKnown RBP29.28■■■□□ 2.28
PTCD3-203ENST00000409783 MTFR1LQ9H019 292 aa29.28■■■□□ 2.28
PTCD3-203ENST00000409783 RTCBQ9Y3I0 505 aaKnown RBP29.28■■■□□ 2.28
PTCD3-203ENST00000409783 C4AP0C0L4 1744 aa29.28■■■□□ 2.28
PTCD3-203ENST00000409783 LAMB4A4D0S4 1761 aa29.27■■■□□ 2.28
PTCD3-203ENST00000409783 ZNF853P0CG23 659 aa29.27■■■□□ 2.28
PTCD3-203ENST00000409783 ZBTB1Q9Y2K1 713 aa29.27■■■□□ 2.28
PTCD3-203ENST00000409783 USP16Q9Y5T5 823 aa29.27■■■□□ 2.28
PTCD3-203ENST00000409783 STARD3NLO95772 234 aa29.26■■■□□ 2.27
PTCD3-203ENST00000409783 WWC1Q8IX03 1113 aa29.26■■■□□ 2.27
PTCD3-203ENST00000409783 SPON1Q9HCB6 807 aa29.26■■■□□ 2.27
PTCD3-203ENST00000409783 GIGYF1O75420 1035 aaPredicted RBP29.25■■■□□ 2.27
PTCD3-203ENST00000409783 CFAP44Q96MT7 982 aa29.25■■■□□ 2.27
PTCD3-203ENST00000409783 SGIP1Q9BQI5 828 aa29.25■■■□□ 2.27
PTCD3-203ENST00000409783 ATF5Q9Y2D1 282 aaPredicted RBP29.25■■■□□ 2.27
PTCD3-203ENST00000409783 SOS1Q07889 1333 aaPredicted RBP29.24■■■□□ 2.27
PTCD3-203ENST00000409783 ADRA2BP18089 450 aa29.24■■■□□ 2.27
PTCD3-203ENST00000409783 PTGER2P43116 358 aa29.24■■■□□ 2.27
PTCD3-203ENST00000409783 ARHGEF1Q92888 912 aaKnown RBP29.24■■■□□ 2.27
PTCD3-203ENST00000409783 SRCAPQ6ZRS2 3230 aa29.24■■■□□ 2.27
PTCD3-203ENST00000409783 TRAPPC3LQ5T215 181 aa29.23■■■□□ 2.27
PTCD3-203ENST00000409783 MSH5O43196 834 aa29.22■■■□□ 2.27
PTCD3-203ENST00000409783 IFT57Q9NWB7 429 aa29.22■■■□□ 2.27
PTCD3-203ENST00000409783 LAS1LQ9Y4W2 734 aaKnown RBP29.22■■■□□ 2.27
PTCD3-203ENST00000409783 A1BGP04217 495 aa29.21■■■□□ 2.27
PTCD3-203ENST00000409783 CALD1Q05682 793 aaKnown RBP29.21■■■□□ 2.27
PTCD3-203ENST00000409783 MBIPQ9NS73 344 aa29.2■■■□□ 2.26
PTCD3-203ENST00000409783 CANXP27824 592 aaKnown RBP29.19■■■□□ 2.26
PTCD3-203ENST00000409783 EIF5P55010 431 aaKnown RBP29.18■■■□□ 2.26
PTCD3-203ENST00000409783 GNAI1P63096 354 aa29.18■■■□□ 2.26
PTCD3-203ENST00000409783 SALL2Q9Y467 1007 aaPredicted RBP29.18■■■□□ 2.26
PTCD3-203ENST00000409783 COL15A1P39059 1388 aa29.17■■■□□ 2.26
PTCD3-203ENST00000409783 KRT24Q2M2I5 525 aa29.17■■■□□ 2.26
PTCD3-203ENST00000409783 NGEFQ8N5V2 710 aa29.17■■■□□ 2.26
PTCD3-203ENST00000409783 MSL1Q68DK7 614 aa29.16■■■□□ 2.26
PTCD3-203ENST00000409783 IL16Q14005 1332 aa29.16■■■□□ 2.26
PTCD3-203ENST00000409783 NBPF26B4DH59 902 aa29.15■■■□□ 2.26
PTCD3-203ENST00000409783 IL6STP40189 918 aaPredicted RBP29.15■■■□□ 2.26
PTCD3-203ENST00000409783 NBPF10Q6P3W6 841 aaKnown RBP29.15■■■□□ 2.26
PTCD3-203ENST00000409783 NBPF15Q8N660 670 aa29.15■■■□□ 2.26
PTCD3-203ENST00000409783 RFC4P35249 363 aa29.14■■■□□ 2.26
PTCD3-203ENST00000409783 PIP4K2AP48426 406 aaPredicted RBP29.14■■■□□ 2.26
PTCD3-203ENST00000409783 USP42Q9H9J4 1324 aaKnown RBP29.14■■■□□ 2.25
PTCD3-203ENST00000409783 GYS1P13807 737 aa29.13■■■□□ 2.25
PTCD3-203ENST00000409783 WDR63Q8IWG1 891 aa29.13■■■□□ 2.25
PTCD3-203ENST00000409783 SRP68Q9UHB9 627 aaKnown RBP29.13■■■□□ 2.25
PTCD3-203ENST00000409783 ZNF521Q96K83 1311 aa29.13■■■□□ 2.25
PTCD3-203ENST00000409783 NARFQ9UHQ1 456 aa29.1■■■□□ 2.25
PTCD3-203ENST00000409783 TSR2Q969E8 191 aaKnown RBP29.08■■■□□ 2.25
PTCD3-203ENST00000409783 BCL2L12Q9HB09 334 aa29.08■■■□□ 2.25
PTCD3-203ENST00000409783 SCN7AQ01118 1682 aa29.08■■■□□ 2.25
PTCD3-203ENST00000409783 A0A087WZG4 1122 aa29.07■■■□□ 2.24
PTCD3-203ENST00000409783 HOXB7P09629 217 aa29.07■■■□□ 2.24
PTCD3-203ENST00000409783 POLD1P28340 1107 aa29.07■■■□□ 2.24
PTCD3-203ENST00000409783 USPL1Q5W0Q7 1092 aa29.07■■■□□ 2.24
PTCD3-203ENST00000409783 NLGN1Q8N2Q7 840 aa29.07■■■□□ 2.24
PTCD3-203ENST00000409783 SPINK5Q9NQ38 1064 aaPredicted RBP29.07■■■□□ 2.24
PTCD3-203ENST00000409783 BCORQ6W2J9 1755 aa29.06■■■□□ 2.24
PTCD3-203ENST00000409783 ERBB4Q15303 1308 aa29.06■■■□□ 2.24
PTCD3-203ENST00000409783 EIF2S2P20042 333 aaKnown RBP29.06■■■□□ 2.24
PTCD3-203ENST00000409783 PDIA6Q15084 440 aa29.06■■■□□ 2.24
PTCD3-203ENST00000409783 DUSP27Q5VZP5 1158 aa29.06■■■□□ 2.24
PTCD3-203ENST00000409783 ARXQ96QS3 562 aa29.06■■■□□ 2.24
PTCD3-203ENST00000409783 ZNF330Q9Y3S2 320 aaPredicted RBP29.06■■■□□ 2.24
PTCD3-203ENST00000409783 ZPR1O75312 459 aa29.05■■■□□ 2.24
PTCD3-203ENST00000409783 FKBP8Q14318 412 aa29.05■■■□□ 2.24
PTCD3-203ENST00000409783 LRP10Q7Z4F1 713 aa29.05■■■□□ 2.24
PTCD3-203ENST00000409783 C8orf58Q8NAV2 365 aa29.05■■■□□ 2.24
PTCD3-203ENST00000409783 TBC1D2BQ9UPU7 963 aa29.05■■■□□ 2.24
PTCD3-203ENST00000409783 PPP1R1BQ9UD71 204 aaPredicted RBP29.03■■■□□ 2.24
PTCD3-203ENST00000409783 FANCIQ9NVI1 1328 aa29.02■■■□□ 2.24
PTCD3-203ENST00000409783 CAMTA2O94983 1202 aa29.02■■■□□ 2.24
PTCD3-203ENST00000409783 MMP10P09238 476 aa29.01■■■□□ 2.23
PTCD3-203ENST00000409783 PROSER3Q2NL68 480 aa29.01■■■□□ 2.23
PTCD3-203ENST00000409783 DZIP3Q86Y13 1208 aaKnown RBP29.01■■■□□ 2.23
PTCD3-203ENST00000409783 TSPYL6Q8N831 410 aa29.01■■■□□ 2.23
PTCD3-203ENST00000409783 NECTIN2Q92692 538 aa29.01■■■□□ 2.23
PTCD3-203ENST00000409783 ELL2O00472 640 aaPredicted RBP29■■■□□ 2.23
PTCD3-203ENST00000409783 TM4SF1P30408 202 aa29■■■□□ 2.23
PTCD3-203ENST00000409783 MYL6BP14649 208 aa28.99■■■□□ 2.23
PTCD3-203ENST00000409783 HDGFL1Q5TGJ6 251 aa28.99■■■□□ 2.23
PTCD3-203ENST00000409783 ANXA1P04083 346 aa28.98■■■□□ 2.23
PTCD3-203ENST00000409783 NPM2Q86SE8 214 aaKnown RBP28.98■■■□□ 2.23
PTCD3-203ENST00000409783 FHDC1Q9C0D6 1143 aaPredicted RBP28.98■■■□□ 2.23
PTCD3-203ENST00000409783 DDR1Q08345 913 aa28.97■■■□□ 2.23
PTCD3-203ENST00000409783 DDX21Q9NR30 783 aaKnown RBP eCLIP28.97■■■□□ 2.23
PTCD3-203ENST00000409783 NFIXQ14938 502 aa28.96■■■□□ 2.23
PTCD3-203ENST00000409783 TTLL7Q6ZT98 887 aa28.96■■■□□ 2.23
PTCD3-203ENST00000409783 CHPF2Q9P2E5 772 aa28.96■■■□□ 2.23
PTCD3-203ENST00000409783 GOLGA2Q08379 1002 aa28.94■■■□□ 2.22
PTCD3-203ENST00000409783 SYT17Q9BSW7 474 aa28.94■■■□□ 2.22
PTCD3-203ENST00000409783 MYH16Q9H6N6 1097 aa28.94■■■□□ 2.22
PTCD3-203ENST00000409783 NUP98P52948 1817 aa28.94■■■□□ 2.22
PTCD3-203ENST00000409783 AFDNP55196 1824 aaKnown RBP28.94■■■□□ 2.22
PTCD3-203ENST00000409783 NRXN2Q9P2S2 1712 aa28.94■■■□□ 2.22
PTCD3-203ENST00000409783 KIF13BQ9NQT8 1826 aa28.93■■■□□ 2.22
PTCD3-203ENST00000409783 POLRMTO00411 1230 aaKnown RBP28.93■■■□□ 2.22
PTCD3-203ENST00000409783 RGL2O15211 777 aa28.93■■■□□ 2.22
PTCD3-203ENST00000409783 TBC1D9BQ66K14 1250 aa28.93■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 106.9 ms