RNA–Protein interactions for RNA: ENST00000403997.2

SDF4-203, Transcript of stromal cell derived factor 4, humanhuman

TSL 3

Gene SDF4, Length 728 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-203ENST00000403997 KCNQ3O43525 872 aa17.67■□□□□ 0.42
SDF4-203ENST00000403997 HTATSF1O43719 755 aaKnown RBP17.67■□□□□ 0.42
SDF4-203ENST00000403997 USPL1Q5W0Q7 1092 aa17.67■□□□□ 0.42
SDF4-203ENST00000403997 HEG1Q9ULI3 1381 aa17.66■□□□□ 0.42
SDF4-203ENST00000403997 PNNQ9H307 717 aaKnown RBP17.66■□□□□ 0.42
SDF4-203ENST00000403997 GOLGB1Q14789 3259 aaKnown RBP17.66■□□□□ 0.42
SDF4-203ENST00000403997 CICQ96RK0 1608 aaPredicted RBP17.65■□□□□ 0.42
SDF4-203ENST00000403997 PLEKHF1Q96S99 279 aa17.65■□□□□ 0.42
SDF4-203ENST00000403997 NARFQ9UHQ1 456 aa17.65■□□□□ 0.42
SDF4-203ENST00000403997 CHD4Q14839 1912 aa17.64■□□□□ 0.42
SDF4-203ENST00000403997 TGFB2P61812 414 aa17.64■□□□□ 0.41
SDF4-203ENST00000403997 COL15A1P39059 1388 aa17.64■□□□□ 0.41
SDF4-203ENST00000403997 A0A0G2JLW4 131 aa17.63■□□□□ 0.41
SDF4-203ENST00000403997 TM4SF1P30408 202 aa17.63■□□□□ 0.41
SDF4-203ENST00000403997 TAF7Q15545 349 aaPredicted RBP17.63■□□□□ 0.41
SDF4-203ENST00000403997 ZNF330Q9Y3S2 320 aaPredicted RBP17.63■□□□□ 0.41
SDF4-203ENST00000403997 C4AP0C0L4 1744 aa17.63■□□□□ 0.41
SDF4-203ENST00000403997 UBR2Q8IWV8 1755 aa17.62■□□□□ 0.41
SDF4-203ENST00000403997 A0A087WZG4 1122 aa17.62■□□□□ 0.41
SDF4-203ENST00000403997 A1BGP04217 495 aa17.62■□□□□ 0.41
SDF4-203ENST00000403997 EIF5P55010 431 aaKnown RBP17.62■□□□□ 0.41
SDF4-203ENST00000403997 DDR1Q08345 913 aa17.62■□□□□ 0.41
SDF4-203ENST00000403997 NFE2L2Q16236 605 aa17.62■□□□□ 0.41
SDF4-203ENST00000403997 MYBBP1AQ9BQG0 1328 aaKnown RBP17.62■□□□□ 0.41
SDF4-203ENST00000403997 MAPK8IP3Q9UPT6 1336 aa17.62■□□□□ 0.41
SDF4-203ENST00000403997 NPM2Q86SE8 214 aaKnown RBP17.61■□□□□ 0.41
SDF4-203ENST00000403997 USP16Q9Y5T5 823 aa17.61■□□□□ 0.41
SDF4-203ENST00000403997 SIPA1L3O60292 1781 aaPredicted RBP17.61■□□□□ 0.41
SDF4-203ENST00000403997 POLRMTO00411 1230 aaKnown RBP17.6■□□□□ 0.41
SDF4-203ENST00000403997 SNRPA1P09661 255 aaKnown RBP17.6■□□□□ 0.41
SDF4-203ENST00000403997 DPEP1P16444 411 aa17.6■□□□□ 0.41
SDF4-203ENST00000403997 ZEB1P37275 1124 aaPredicted RBP17.6■□□□□ 0.41
SDF4-203ENST00000403997 NFIXQ14938 502 aa17.6■□□□□ 0.41
SDF4-203ENST00000403997 MIS18AQ9NYP9 233 aa17.6■□□□□ 0.41
SDF4-203ENST00000403997 C10orf71Q711Q0 1435 aa17.6■□□□□ 0.41
SDF4-203ENST00000403997 PXDNLA1KZ92 1463 aa17.59■□□□□ 0.41
SDF4-203ENST00000403997 IL6STP40189 918 aaPredicted RBP17.59■□□□□ 0.41
SDF4-203ENST00000403997 BCL2L12Q9HB09 334 aa17.59■□□□□ 0.41
SDF4-203ENST00000403997 TBC1D2BQ9UPU7 963 aa17.59■□□□□ 0.41
SDF4-203ENST00000403997 BCS1LQ9Y276 419 aa17.59■□□□□ 0.41
SDF4-203ENST00000403997 PRAMEF22A3QJZ6 481 aa17.58■□□□□ 0.4
SDF4-203ENST00000403997 PNISRQ8TF01 805 aaKnown RBP17.58■□□□□ 0.4
SDF4-203ENST00000403997 BICDL1Q6ZP65 573 aa17.57■□□□□ 0.4
SDF4-203ENST00000403997 THUMPD2Q9BTF0 503 aaKnown RBP17.57■□□□□ 0.4
SDF4-203ENST00000403997 SERPINB2P05120 415 aa17.56■□□□□ 0.4
SDF4-203ENST00000403997 PIP4K2AP48426 406 aaPredicted RBP17.56■□□□□ 0.4
SDF4-203ENST00000403997 KIF13BQ9NQT8 1826 aa17.56■□□□□ 0.4
SDF4-203ENST00000403997 KCNA3P22001 575 aa17.55■□□□□ 0.4
SDF4-203ENST00000403997 RIPK4P57078 832 aa17.55■□□□□ 0.4
SDF4-203ENST00000403997 WDR43Q15061 677 aaKnown RBP eCLIP17.55■□□□□ 0.4
SDF4-203ENST00000403997 PIM2Q9P1W9 311 aa17.55■□□□□ 0.4
SDF4-203ENST00000403997 N4BP2Q86UW6 1770 aaPredicted RBP17.54■□□□□ 0.4
SDF4-203ENST00000403997 CHRNA5P30532 468 aa17.54■□□□□ 0.4
SDF4-203ENST00000403997 TBC1D9BQ66K14 1250 aa17.54■□□□□ 0.4
SDF4-203ENST00000403997 DZIP3Q86Y13 1208 aaKnown RBP17.54■□□□□ 0.4
SDF4-203ENST00000403997 PRKRIP1Q9H875 184 aaPredicted RBP17.54■□□□□ 0.4
SDF4-203ENST00000403997 TMPOP42166 694 aaKnown RBP17.53■□□□□ 0.4
SDF4-203ENST00000403997 ARHGAP27Q6ZUM4 889 aa17.53■□□□□ 0.4
SDF4-203ENST00000403997 CCDC146Q8IYE0 955 aa17.53■□□□□ 0.4
SDF4-203ENST00000403997 DLG5Q8TDM6 1919 aa17.53■□□□□ 0.4
SDF4-203ENST00000403997 CAMTA2O94983 1202 aa17.52■□□□□ 0.4
SDF4-203ENST00000403997 DALRD3Q5D0E6 543 aaKnown RBP17.52■□□□□ 0.4
SDF4-203ENST00000403997 NBPF26B4DH59 902 aa17.51■□□□□ 0.39
SDF4-203ENST00000403997 EIF4A1P60842 406 aaKnown RBP17.51■□□□□ 0.39
SDF4-203ENST00000403997 NEUROD2Q15784 382 aa17.51■□□□□ 0.39
SDF4-203ENST00000403997 NBPF10Q6P3W6 841 aaKnown RBP17.51■□□□□ 0.39
SDF4-203ENST00000403997 NBPF15Q8N660 670 aa17.51■□□□□ 0.39
SDF4-203ENST00000403997 SETDB2Q96T68 719 aa17.51■□□□□ 0.39
SDF4-203ENST00000403997 RRP7AQ9Y3A4 280 aaKnown RBP17.51■□□□□ 0.39
SDF4-203ENST00000403997 GIGYF1O75420 1035 aaPredicted RBP17.5■□□□□ 0.39
SDF4-203ENST00000403997 LMOD3Q0VAK6 560 aa17.5■□□□□ 0.39
SDF4-203ENST00000403997 RUNDC1Q96C34 613 aa17.5■□□□□ 0.39
SDF4-203ENST00000403997 TSPYL4Q9UJ04 414 aa17.5■□□□□ 0.39
SDF4-203ENST00000403997 ADAMTS8Q9UP79 889 aa17.5■□□□□ 0.39
SDF4-203ENST00000403997 KIAA1551Q9HCM1 1747 aa17.5■□□□□ 0.39
SDF4-203ENST00000403997 NPHP1O15259 732 aa17.48■□□□□ 0.39
SDF4-203ENST00000403997 CLEC4GQ6UXB4 293 aa17.48■□□□□ 0.39
SDF4-203ENST00000403997 C2CD5Q86YS7 1000 aa17.48■□□□□ 0.39
SDF4-203ENST00000403997 NGEFQ8N5V2 710 aa17.48■□□□□ 0.39
SDF4-203ENST00000403997 H0YIN7 160 aa17.47■□□□□ 0.39
SDF4-203ENST00000403997 CCDC24Q8N4L8 307 aa17.47■□□□□ 0.39
SDF4-203ENST00000403997 ZNF526Q8TF50 670 aaPredicted RBP17.47■□□□□ 0.39
SDF4-203ENST00000403997 ZNF652Q9Y2D9 606 aa17.47■□□□□ 0.39
SDF4-203ENST00000403997 CARMIL3Q8ND23 1372 aa17.47■□□□□ 0.39
SDF4-203ENST00000403997 AFDNP55196 1824 aaKnown RBP17.47■□□□□ 0.39
SDF4-203ENST00000403997 ATP10DQ9P241 1426 aa17.47■□□□□ 0.39
SDF4-203ENST00000403997 PRR5LQ6MZQ0 368 aa17.46■□□□□ 0.39
SDF4-203ENST00000403997 BRIP1Q9BX63 1249 aa17.46■□□□□ 0.39
SDF4-203ENST00000403997 CNBD1Q8NA66 436 aa17.45■□□□□ 0.38
SDF4-203ENST00000403997 GPBP1L1Q9HC44 474 aaPredicted RBP17.45■□□□□ 0.38
SDF4-203ENST00000403997 BABAM1Q9NWV8 329 aa17.45■□□□□ 0.38
SDF4-203ENST00000403997 NRXN2Q9P2S2 1712 aa17.44■□□□□ 0.38
SDF4-203ENST00000403997 MYL6BP14649 208 aa17.44■□□□□ 0.38
SDF4-203ENST00000403997 PDE6BP35913 854 aa17.44■□□□□ 0.38
SDF4-203ENST00000403997 TTLL6Q8N841 843 aa17.44■□□□□ 0.38
SDF4-203ENST00000403997 ZNF622Q969S3 477 aaKnown RBP eCLIP17.44■□□□□ 0.383e-8■■■□□ 17.8
SDF4-203ENST00000403997 LAS1LQ9Y4W2 734 aaKnown RBP17.44■□□□□ 0.38
SDF4-203ENST00000403997 ADCY9O60503 1353 aa17.43■□□□□ 0.38
SDF4-203ENST00000403997 SCN7AQ01118 1682 aa17.43■□□□□ 0.38
SDF4-203ENST00000403997 ZNF316A6NFI3 1004 aaPredicted RBP17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms