RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 TEX13AQ9BXU3 409 aaPredicted RBP20.64■□□□□ 0.89
HMGA1-204ENST00000401473 VAMP4O75379 141 aa20.63■□□□□ 0.89
HMGA1-204ENST00000401473 A1BGP04217 495 aa20.63■□□□□ 0.89
HMGA1-204ENST00000401473 EIF2S2P20042 333 aaKnown RBP20.63■□□□□ 0.89
HMGA1-204ENST00000401473 TWISTNBQ3B726 338 aaPredicted RBP20.63■□□□□ 0.89
HMGA1-204ENST00000401473 AMIGO3Q86WK7 504 aa20.63■□□□□ 0.89
HMGA1-204ENST00000401473 COL5A3P25940 1745 aaPredicted RBP20.63■□□□□ 0.89
HMGA1-204ENST00000401473 CRKLP46109 303 aaKnown RBP20.62■□□□□ 0.89
HMGA1-204ENST00000401473 INTS5Q6P9B9 1019 aaKnown RBP20.62■□□□□ 0.89
HMGA1-204ENST00000401473 NECTIN2Q92692 538 aa20.62■□□□□ 0.89
HMGA1-204ENST00000401473 STARD3NLO95772 234 aa20.62■□□□□ 0.89
HMGA1-204ENST00000401473 CICQ96RK0 1608 aaPredicted RBP20.62■□□□□ 0.89
HMGA1-204ENST00000401473 PIP4K2AP48426 406 aaPredicted RBP20.61■□□□□ 0.89
HMGA1-204ENST00000401473 SLC15A2Q16348 729 aa20.61■□□□□ 0.89
HMGA1-204ENST00000401473 SMIM5Q71RC9 77 aa20.61■□□□□ 0.89
HMGA1-204ENST00000401473 HOXB7P09629 217 aa20.6■□□□□ 0.89
HMGA1-204ENST00000401473 R3HDM1Q15032 1099 aaKnown RBP20.6■□□□□ 0.89
HMGA1-204ENST00000401473 NBPF14Q5TI25 921 aa20.6■□□□□ 0.89
HMGA1-204ENST00000401473 ZBTB1Q9Y2K1 713 aa20.6■□□□□ 0.89
HMGA1-204ENST00000401473 C4BP0C0L5 1744 aa20.59■□□□□ 0.89
HMGA1-204ENST00000401473 PSDA5PKW4 1024 aaPredicted RBP20.59■□□□□ 0.89
HMGA1-204ENST00000401473 NBPF26B4DH59 902 aa20.59■□□□□ 0.89
HMGA1-204ENST00000401473 RC3H1Q5TC82 1133 aaKnown RBP20.59■□□□□ 0.89
HMGA1-204ENST00000401473 NBPF10Q6P3W6 841 aaKnown RBP20.59■□□□□ 0.89
HMGA1-204ENST00000401473 NBPF15Q8N660 670 aa20.59■□□□□ 0.89
HMGA1-204ENST00000401473 PDGFDQ9GZP0 370 aaPredicted RBP20.59■□□□□ 0.89
HMGA1-204ENST00000401473 PDIA6Q15084 440 aa20.58■□□□□ 0.89
HMGA1-204ENST00000401473 HDGFL1Q5TGJ6 251 aa20.58■□□□□ 0.89
HMGA1-204ENST00000401473 STK32BQ9NY57 414 aa20.58■□□□□ 0.89
HMGA1-204ENST00000401473 CNTNAP4Q9C0A0 1308 aa20.58■□□□□ 0.88
HMGA1-204ENST00000401473 CCDC87Q9NVE4 849 aa20.58■□□□□ 0.88
HMGA1-204ENST00000401473 TCERG1O14776 1098 aaKnown RBP20.57■□□□□ 0.88
HMGA1-204ENST00000401473 CANXP27824 592 aaKnown RBP20.57■□□□□ 0.88
HMGA1-204ENST00000401473 TFCP2L1Q9NZI6 479 aa20.57■□□□□ 0.88
HMGA1-204ENST00000401473 ANXA1P04083 346 aa20.56■□□□□ 0.88
HMGA1-204ENST00000401473 PROSER3Q2NL68 480 aa20.56■□□□□ 0.88
HMGA1-204ENST00000401473 SOS1Q07889 1333 aaPredicted RBP20.56■□□□□ 0.88
HMGA1-204ENST00000401473 LAMB4A4D0S4 1761 aa20.56■□□□□ 0.88
HMGA1-204ENST00000401473 GNPATO15228 680 aa20.56■□□□□ 0.88
HMGA1-204ENST00000401473 AK7Q96M32 723 aa20.56■□□□□ 0.88
HMGA1-204ENST00000401473 CHPF2Q9P2E5 772 aa20.56■□□□□ 0.88
HMGA1-204ENST00000401473 RPS6KA4O75676 772 aa20.55■□□□□ 0.88
HMGA1-204ENST00000401473 LRP10Q7Z4F1 713 aa20.55■□□□□ 0.88
HMGA1-204ENST00000401473 PNPLA7Q6ZV29 1317 aa20.55■□□□□ 0.88
HMGA1-204ENST00000401473 MYL6BP14649 208 aa20.54■□□□□ 0.88
HMGA1-204ENST00000401473 UBR3Q6ZT12 1888 aa20.54■□□□□ 0.88
HMGA1-204ENST00000401473 EIF5P55010 431 aaKnown RBP20.54■□□□□ 0.88
HMGA1-204ENST00000401473 CCDC30Q5VVM6 783 aa20.54■□□□□ 0.88
HMGA1-204ENST00000401473 HMGB2P26583 209 aaKnown RBP20.53■□□□□ 0.88
HMGA1-204ENST00000401473 RTCBQ9Y3I0 505 aaKnown RBP20.53■□□□□ 0.88
HMGA1-204ENST00000401473 PHF14O94880 888 aa20.52■□□□□ 0.88
HMGA1-204ENST00000401473 IL6STP40189 918 aaPredicted RBP20.52■□□□□ 0.88
HMGA1-204ENST00000401473 DDX21Q9NR30 783 aaKnown RBP eCLIP20.52■□□□□ 0.88
HMGA1-204ENST00000401473 DBF4Q9UBU7 674 aaPredicted RBP20.52■□□□□ 0.88
HMGA1-204ENST00000401473 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.52■□□□□ 0.87
HMGA1-204ENST00000401473 COL23A1Q86Y22 540 aaPredicted RBP20.52■□□□□ 0.87
HMGA1-204ENST00000401473 ARHGEF1Q92888 912 aaKnown RBP20.51■□□□□ 0.87
HMGA1-204ENST00000401473 ZNF330Q9Y3S2 320 aaPredicted RBP20.51■□□□□ 0.87
HMGA1-204ENST00000401473 TUBGCP6Q96RT7 1819 aa20.51■□□□□ 0.87
HMGA1-204ENST00000401473 ERBB4Q15303 1308 aa20.51■□□□□ 0.87
HMGA1-204ENST00000401473 SLC4A2P04920 1241 aa20.5■□□□□ 0.87
HMGA1-204ENST00000401473 CT47B1P0C2W7 299 aaPredicted RBP20.5■□□□□ 0.87
HMGA1-204ENST00000401473 SSH1Q8WYL5 1049 aa20.5■□□□□ 0.87
HMGA1-204ENST00000401473 PHAXQ9H814 394 aaKnown RBP20.5■□□□□ 0.87
HMGA1-204ENST00000401473 SSFA2P28290 1259 aa20.49■□□□□ 0.87
HMGA1-204ENST00000401473 TRAPPC3LQ5T215 181 aa20.49■□□□□ 0.87
HMGA1-204ENST00000401473 BCL2L13Q9BXK5 485 aa20.49■□□□□ 0.87
HMGA1-204ENST00000401473 CACNA1FO60840 1977 aa20.49■□□□□ 0.87
HMGA1-204ENST00000401473 RARSP54136 660 aaKnown RBP20.48■□□□□ 0.87
HMGA1-204ENST00000401473 G2E3Q7L622 706 aa20.48■□□□□ 0.87
HMGA1-204ENST00000401473 ZNF428Q96B54 188 aa20.48■□□□□ 0.87
HMGA1-204ENST00000401473 CHMP4AQ9BY43 222 aa20.48■□□□□ 0.87
HMGA1-204ENST00000401473 TTLL7Q6ZT98 887 aa20.47■□□□□ 0.87
HMGA1-204ENST00000401473 STK31Q9BXU1 1019 aa20.47■□□□□ 0.87
HMGA1-204ENST00000401473 TBC1D2BQ9UPU7 963 aa20.47■□□□□ 0.87
HMGA1-204ENST00000401473 COPS6Q7L5N1 327 aa20.47■□□□□ 0.87
HMGA1-204ENST00000401473 HYPKQ9NX55 129 aa20.47■□□□□ 0.87
HMGA1-204ENST00000401473 COL15A1P39059 1388 aa20.46■□□□□ 0.87
HMGA1-204ENST00000401473 AIMP1Q12904 312 aaKnown RBP20.46■□□□□ 0.87
HMGA1-204ENST00000401473 XAGE3Q8WTP9 111 aa20.46■□□□□ 0.87
HMGA1-204ENST00000401473 MRPL50Q8N5N7 158 aaKnown RBP20.45■□□□□ 0.86
HMGA1-204ENST00000401473 ARXQ96QS3 562 aa20.45■□□□□ 0.86
HMGA1-204ENST00000401473 MSH5O43196 834 aa20.45■□□□□ 0.86
HMGA1-204ENST00000401473 BCAR3O75815 825 aa20.45■□□□□ 0.86
HMGA1-204ENST00000401473 ADRA2BP18089 450 aa20.45■□□□□ 0.86
HMGA1-204ENST00000401473 ALDH1L2Q3SY69 923 aa20.45■□□□□ 0.86
HMGA1-204ENST00000401473 FLAD1Q8NFF5 587 aa20.45■□□□□ 0.86
HMGA1-204ENST00000401473 RFC4P35249 363 aa20.44■□□□□ 0.86
HMGA1-204ENST00000401473 DZIP3Q86Y13 1208 aaKnown RBP20.44■□□□□ 0.86
HMGA1-204ENST00000401473 SRP68Q9UHB9 627 aaKnown RBP20.44■□□□□ 0.86
HMGA1-204ENST00000401473 CASZ1Q86V15 1759 aa20.44■□□□□ 0.86
HMGA1-204ENST00000401473 QSER1Q2KHR3 1735 aa20.44■□□□□ 0.86
HMGA1-204ENST00000401473 ZBTB7AO95365 584 aa20.43■□□□□ 0.86
HMGA1-204ENST00000401473 NPM2Q86SE8 214 aaKnown RBP20.43■□□□□ 0.86
HMGA1-204ENST00000401473 SMC4Q9NTJ3 1288 aa20.43■□□□□ 0.86
HMGA1-204ENST00000401473 C4AP0C0L4 1744 aa20.42■□□□□ 0.86
HMGA1-204ENST00000401473 FLIIQ13045 1269 aa20.42■□□□□ 0.86
HMGA1-204ENST00000401473 BCL2L12Q9HB09 334 aa20.42■□□□□ 0.86
HMGA1-204ENST00000401473 NARFQ9UHQ1 456 aa20.42■□□□□ 0.86
HMGA1-204ENST00000401473 GOLGB1Q14789 3259 aaKnown RBP20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms