RNA–Protein interactions for RNA: ENST00000396386.6

CBX3-202, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-202ENST00000396386 DCAF5Q96JK2 942 aa18.52■□□□□ 0.56
CBX3-202ENST00000396386 SHANK3Q9BYB0 1731 aa18.52■□□□□ 0.56
CBX3-202ENST00000396386 IBTKQ9P2D0 1353 aaPredicted RBP18.52■□□□□ 0.56
CBX3-202ENST00000396386 PNMA6EA0A0J9YXQ4 647 aa18.52■□□□□ 0.55
CBX3-202ENST00000396386 ZNF790Q6PG37 636 aa18.52■□□□□ 0.55
CBX3-202ENST00000396386 OTUD7AQ8TE49 926 aaPredicted RBP18.52■□□□□ 0.55
CBX3-202ENST00000396386 HYPKQ9NX55 129 aa18.52■□□□□ 0.55
CBX3-202ENST00000396386 GLI3P10071 1580 aa18.51■□□□□ 0.55
CBX3-202ENST00000396386 ILDR2Q71H61 639 aa18.51■□□□□ 0.55
CBX3-202ENST00000396386 BCL11AQ9H165 835 aa18.51■□□□□ 0.55
CBX3-202ENST00000396386 EXOC6BQ9Y2D4 811 aa18.51■□□□□ 0.55
CBX3-202ENST00000396386 CYP27B1O15528 508 aa18.5■□□□□ 0.55
CBX3-202ENST00000396386 LRRCC1Q9C099 1032 aa18.5■□□□□ 0.55
CBX3-202ENST00000396386 PAPPAQ13219 1627 aa18.5■□□□□ 0.55
CBX3-202ENST00000396386 PRAMEF22A3QJZ6 481 aa18.5■□□□□ 0.55
CBX3-202ENST00000396386 PROSER3Q2NL68 480 aa18.5■□□□□ 0.55
CBX3-202ENST00000396386 TBC1D2Q9BYX2 928 aa18.5■□□□□ 0.55
CBX3-202ENST00000396386 USP35Q9P2H5 1018 aa18.5■□□□□ 0.55
CBX3-202ENST00000396386 DDX21Q9NR30 783 aaKnown RBP eCLIP18.49■□□□□ 0.55
CBX3-202ENST00000396386 UBR2Q8IWV8 1755 aa18.49■□□□□ 0.55
CBX3-202ENST00000396386 ALDH1L1O75891 902 aa18.48■□□□□ 0.55
CBX3-202ENST00000396386 SLC39A6Q13433 755 aa18.48■□□□□ 0.55
CBX3-202ENST00000396386 KSR2Q6VAB6 950 aa18.48■□□□□ 0.55
CBX3-202ENST00000396386 NFATC2IPQ8NCF5 419 aa18.48■□□□□ 0.55
CBX3-202ENST00000396386 SSH3Q8TE77 659 aa18.48■□□□□ 0.55
CBX3-202ENST00000396386 OSBPL3Q9H4L5 887 aa18.48■□□□□ 0.55
CBX3-202ENST00000396386 MAP3K2Q9Y2U5 619 aa18.48■□□□□ 0.55
CBX3-202ENST00000396386 PCDH11XQ9BZA7 1347 aa18.48■□□□□ 0.55
CBX3-202ENST00000396386 PCDH11YQ9BZA8 1340 aa18.48■□□□□ 0.55
CBX3-202ENST00000396386 DDX58O95786 925 aaKnown RBP18.48■□□□□ 0.55
CBX3-202ENST00000396386 TOM1L2Q6ZVM7 507 aa18.48■□□□□ 0.55
CBX3-202ENST00000396386 TTC5Q8N0Z6 440 aa18.48■□□□□ 0.55
CBX3-202ENST00000396386 UBAP1LF5GYI3 381 aa18.47■□□□□ 0.55
CBX3-202ENST00000396386 POLA2Q14181 598 aa18.46■□□□□ 0.55
CBX3-202ENST00000396386 CASC1Q6TDU7 716 aa18.46■□□□□ 0.55
CBX3-202ENST00000396386 SALL3Q9BXA9 1300 aa18.46■□□□□ 0.55
CBX3-202ENST00000396386 SDSP20132 328 aa18.46■□□□□ 0.54
CBX3-202ENST00000396386 PDE1AP54750 535 aa18.46■□□□□ 0.54
CBX3-202ENST00000396386 ARFGEF2Q9Y6D5 1785 aa18.45■□□□□ 0.54
CBX3-202ENST00000396386 AFDNP55196 1824 aaKnown RBP18.45■□□□□ 0.54
CBX3-202ENST00000396386 NBPF7P0C2Y1 421 aaPredicted RBP18.45■□□□□ 0.54
CBX3-202ENST00000396386 CABP4P57796 275 aa18.45■□□□□ 0.54
CBX3-202ENST00000396386 PPP1R42Q7Z4L9 355 aa18.45■□□□□ 0.54
CBX3-202ENST00000396386 RAB11FIP3O75154 756 aa18.44■□□□□ 0.54
CBX3-202ENST00000396386 PDIA6Q15084 440 aa18.44■□□□□ 0.54
CBX3-202ENST00000396386 HSCBQ8IWL3 235 aa18.44■□□□□ 0.54
CBX3-202ENST00000396386 ZNF496Q96IT1 587 aaPredicted RBP18.44■□□□□ 0.54
CBX3-202ENST00000396386 HDAC5Q9UQL6 1122 aa18.44■□□□□ 0.54
CBX3-202ENST00000396386 ROBO1Q9Y6N7 1651 aa18.44■□□□□ 0.54
CBX3-202ENST00000396386 FMNL2Q96PY5 1086 aa18.43■□□□□ 0.54
CBX3-202ENST00000396386 CARD10Q9BWT7 1032 aa18.43■□□□□ 0.54
CBX3-202ENST00000396386 AK9Q5TCS8 1911 aa18.43■□□□□ 0.54
CBX3-202ENST00000396386 COL14A1Q05707 1796 aaKnown RBP18.43■□□□□ 0.54
CBX3-202ENST00000396386 SRGAP3O43295 1099 aa18.43■□□□□ 0.54
CBX3-202ENST00000396386 SNRPA1P09661 255 aaKnown RBP18.43■□□□□ 0.54
CBX3-202ENST00000396386 MX1P20591 662 aa18.43■□□□□ 0.54
CBX3-202ENST00000396386 ZCRB1Q8TBF4 217 aaKnown RBP18.43■□□□□ 0.54
CBX3-202ENST00000396386 COL22A1Q8NFW1 1626 aaPredicted RBP18.42■□□□□ 0.54
CBX3-202ENST00000396386 LINS1Q8NG48 757 aa18.42■□□□□ 0.54
CBX3-202ENST00000396386 C9orf78Q9NZ63 289 aaPredicted RBP18.42■□□□□ 0.54
CBX3-202ENST00000396386 TOGARAM1Q9Y4F4 1720 aa18.42■□□□□ 0.54
CBX3-202ENST00000396386 AOX1Q06278 1338 aa18.42■□□□□ 0.54
CBX3-202ENST00000396386 AHDC1Q5TGY3 1603 aaPredicted RBP18.42■□□□□ 0.54
CBX3-202ENST00000396386 IL2RBP14784 551 aa18.41■□□□□ 0.54
CBX3-202ENST00000396386 NFKBIBQ15653 356 aa18.41■□□□□ 0.54
CBX3-202ENST00000396386 AIMP1Q12904 312 aaKnown RBP18.41■□□□□ 0.54
CBX3-202ENST00000396386 MTX1Q13505 466 aa18.41■□□□□ 0.54
CBX3-202ENST00000396386 SNX21Q969T3 373 aa18.41■□□□□ 0.54
CBX3-202ENST00000396386 SLKQ9H2G2 1235 aaPredicted RBP18.41■□□□□ 0.54
CBX3-202ENST00000396386 PLCH1Q4KWH8 1693 aa18.41■□□□□ 0.54
CBX3-202ENST00000396386 SURF6O75683 361 aaKnown RBP18.4■□□□□ 0.54
CBX3-202ENST00000396386 HSP90AB4PQ58FF6 505 aa18.4■□□□□ 0.54
CBX3-202ENST00000396386 STAP2Q9UGK3 403 aa18.4■□□□□ 0.54
CBX3-202ENST00000396386 KCPQ6ZWJ8 1503 aa18.4■□□□□ 0.54
CBX3-202ENST00000396386 MYL6BP14649 208 aa18.39■□□□□ 0.54
CBX3-202ENST00000396386 CWF19L2Q2TBE0 894 aaKnown RBP18.39■□□□□ 0.54
CBX3-202ENST00000396386 LARP1Q6PKG0 1096 aaKnown RBP18.39■□□□□ 0.54
CBX3-202ENST00000396386 RIC3Q7Z5B4 369 aa18.39■□□□□ 0.54
CBX3-202ENST00000396386 WNK3Q9BYP7 1800 aa18.39■□□□□ 0.53
CBX3-202ENST00000396386 SOCS7O14512 581 aa18.39■□□□□ 0.53
CBX3-202ENST00000396386 KIF1BPQ96EK5 621 aa18.39■□□□□ 0.53
CBX3-202ENST00000396386 KIF2CQ99661 725 aa18.39■□□□□ 0.53
CBX3-202ENST00000396386 ANTXR1Q9H6X2 564 aa18.39■□□□□ 0.53
CBX3-202ENST00000396386 STRN4Q9NRL3 753 aa18.39■□□□□ 0.53
CBX3-202ENST00000396386 UTYO14607 1347 aa18.39■□□□□ 0.53
CBX3-202ENST00000396386 GRM8O00222 908 aa18.38■□□□□ 0.53
CBX3-202ENST00000396386 EVA1CP58658 441 aa18.38■□□□□ 0.53
CBX3-202ENST00000396386 NEXNQ0ZGT2 675 aa18.38■□□□□ 0.53
CBX3-202ENST00000396386 NUP188Q5SRE5 1749 aa18.38■□□□□ 0.53
CBX3-202ENST00000396386 RHPN1Q8TCX5 695 aa18.38■□□□□ 0.53
CBX3-202ENST00000396386 XAGE3Q8WTP9 111 aa18.38■□□□□ 0.53
CBX3-202ENST00000396386 COL16A1Q07092 1604 aaPredicted RBP18.38■□□□□ 0.53
CBX3-202ENST00000396386 ERVV-2B6SEH9 535 aa18.37■□□□□ 0.53
CBX3-202ENST00000396386 NKX1-1Q15270 411 aaPredicted RBP18.37■□□□□ 0.53
CBX3-202ENST00000396386 ERBB4Q15303 1308 aa18.37■□□□□ 0.53
CBX3-202ENST00000396386 REC8O95072 547 aa18.37■□□□□ 0.53
CBX3-202ENST00000396386 TSHZ3Q63HK5 1081 aa18.37■□□□□ 0.53
CBX3-202ENST00000396386 IL1RAPL2Q9NP60 686 aa18.37■□□□□ 0.53
CBX3-202ENST00000396386 USP16Q9Y5T5 823 aa18.36■□□□□ 0.53
CBX3-202ENST00000396386 TNS2Q63HR2 1409 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms