RNA–Protein interactions for RNA: ENST00000396354.5

NDE1-201, Transcript of nudE neurodevelopment protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NDE1, Length 3,221 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1-201ENST00000396354 CASC1Q6TDU7 716 aa11.38□□□□□ -0.59
NDE1-201ENST00000396354 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.38□□□□□ -0.59
NDE1-201ENST00000396354 TTC22Q5TAA0 569 aa11.38□□□□□ -0.59
NDE1-201ENST00000396354 SLIT3O75094 1523 aa11.38□□□□□ -0.59
NDE1-201ENST00000396354 PTPRCP08575 1304 aa11.37□□□□□ -0.59
NDE1-201ENST00000396354 SYCE3A1L190 88 aa11.37□□□□□ -0.59
NDE1-201ENST00000396354 NUTM1Q86Y26 1132 aa11.37□□□□□ -0.59
NDE1-201ENST00000396354 PKNOX2Q96KN3 472 aa11.37□□□□□ -0.59
NDE1-201ENST00000396354 PHAXQ9H814 394 aaKnown RBP11.37□□□□□ -0.59
NDE1-201ENST00000396354 CEMIPQ8WUJ3 1361 aa11.37□□□□□ -0.59
NDE1-201ENST00000396354 GCP02774 474 aa11.37□□□□□ -0.59
NDE1-201ENST00000396354 ATF3P18847 181 aa11.37□□□□□ -0.59
NDE1-201ENST00000396354 TAOK2Q9UL54 1235 aa11.37□□□□□ -0.59
NDE1-201ENST00000396354 CHMP3Q9Y3E7 222 aa11.37□□□□□ -0.59
NDE1-201ENST00000396354 KDM3BQ7LBC6 1761 aa11.37□□□□□ -0.59
NDE1-201ENST00000396354 BCL11BQ9C0K0 894 aaPredicted RBP11.37□□□□□ -0.59
NDE1-201ENST00000396354 NSFL1CQ9UNZ2 370 aaKnown RBP11.37□□□□□ -0.59
NDE1-201ENST00000396354 FLIIQ13045 1269 aa11.36□□□□□ -0.59
NDE1-201ENST00000396354 VSIG10Q8N0Z9 540 aa11.36□□□□□ -0.59
NDE1-201ENST00000396354 C1orf167Q5SNV9 1468 aa11.36□□□□□ -0.59
NDE1-201ENST00000396354 ARHGEF25Q86VW2 580 aa11.36□□□□□ -0.59
NDE1-201ENST00000396354 LMO7Q8WWI1 1683 aa11.36□□□□□ -0.59
NDE1-201ENST00000396354 PRAMEF22A3QJZ6 481 aa11.35□□□□□ -0.59
NDE1-201ENST00000396354 ST18O60284 1047 aa11.35□□□□□ -0.59
NDE1-201ENST00000396354 MPRIPQ6WCQ1 1025 aa11.35□□□□□ -0.59
NDE1-201ENST00000396354 CCDC9Q9Y3X0 531 aaKnown RBP11.35□□□□□ -0.59
NDE1-201ENST00000396354 MSNP26038 577 aaKnown RBP11.35□□□□□ -0.59
NDE1-201ENST00000396354 POLA2Q14181 598 aa11.35□□□□□ -0.59
NDE1-201ENST00000396354 PNMA6EA0A0J9YXQ4 647 aa11.35□□□□□ -0.59
NDE1-201ENST00000396354 PRIM1P49642 420 aaKnown RBP11.35□□□□□ -0.59
NDE1-201ENST00000396354 STK31Q9BXU1 1019 aa11.35□□□□□ -0.59
NDE1-201ENST00000396354 USP26Q9BXU7 913 aa11.35□□□□□ -0.59
NDE1-201ENST00000396354 PALD1Q9ULE6 856 aa11.35□□□□□ -0.59
NDE1-201ENST00000396354 ALS2Q96Q42 1657 aa11.35□□□□□ -0.59
NDE1-201ENST00000396354 PTMAP06454 111 aaKnown RBP11.34□□□□□ -0.59
NDE1-201ENST00000396354 CPA1P15085 419 aa11.34□□□□□ -0.59
NDE1-201ENST00000396354 HSP90AA2PQ14568 343 aaPredicted RBP11.34□□□□□ -0.59
NDE1-201ENST00000396354 TAF7Q15545 349 aaPredicted RBP11.34□□□□□ -0.59
NDE1-201ENST00000396354 SNX21Q969T3 373 aa11.34□□□□□ -0.59
NDE1-201ENST00000396354 N4BP2Q86UW6 1770 aaPredicted RBP11.34□□□□□ -0.59
NDE1-201ENST00000396354 HTATSF1O43719 755 aaKnown RBP11.34□□□□□ -0.59
NDE1-201ENST00000396354 CHMP4BQ9H444 224 aaKnown RBP11.34□□□□□ -0.59
NDE1-201ENST00000396354 NCAPD2Q15021 1401 aa11.34□□□□□ -0.59
NDE1-201ENST00000396354 OS9Q13438 667 aaPredicted RBP11.33□□□□□ -0.59
NDE1-201ENST00000396354 MST1RQ04912 1400 aa11.33□□□□□ -0.6
NDE1-201ENST00000396354 CAMTA1Q9Y6Y1 1673 aa11.33□□□□□ -0.6
NDE1-201ENST00000396354 RABEP1Q15276 862 aa11.33□□□□□ -0.6
NDE1-201ENST00000396354 UNC5CLQ8IV45 518 aa11.33□□□□□ -0.6
NDE1-201ENST00000396354 R3HCC1Q9Y3T6 440 aaKnown RBP11.33□□□□□ -0.6
NDE1-201ENST00000396354 LRRFIP2Q9Y608 721 aaKnown RBP11.33□□□□□ -0.6
NDE1-201ENST00000396354 TUBGCP6Q96RT7 1819 aa11.33□□□□□ -0.6
NDE1-201ENST00000396354 ZC3H6P61129 1189 aaKnown RBP11.33□□□□□ -0.6
NDE1-201ENST00000396354 ZSCAN23Q3MJ62 389 aa11.33□□□□□ -0.6
NDE1-201ENST00000396354 KRT28Q7Z3Y7 464 aa11.33□□□□□ -0.6
NDE1-201ENST00000396354 CABLES1Q8TDN4 633 aa11.33□□□□□ -0.6
NDE1-201ENST00000396354 ANKRD24Q8TF21 1146 aa11.33□□□□□ -0.6
NDE1-201ENST00000396354 HAP1P54257 671 aaPredicted RBP11.32□□□□□ -0.6
NDE1-201ENST00000396354 EIF4A1P60842 406 aaKnown RBP11.32□□□□□ -0.6
NDE1-201ENST00000396354 CADPS2Q86UW7 1296 aa11.32□□□□□ -0.6
NDE1-201ENST00000396354 RBSNQ9H1K0 784 aa11.32□□□□□ -0.6
NDE1-201ENST00000396354 FAM13BQ9NYF5 915 aa11.32□□□□□ -0.6
NDE1-201ENST00000396354 PROSER3Q2NL68 480 aa11.32□□□□□ -0.6
NDE1-201ENST00000396354 ZNF530Q6P9A1 599 aaPredicted RBP11.32□□□□□ -0.6
NDE1-201ENST00000396354 KIAA1211Q6ZU35 1233 aa11.32□□□□□ -0.6
NDE1-201ENST00000396354 CLCN1P35523 988 aa11.31□□□□□ -0.6
NDE1-201ENST00000396354 CHPF2Q9P2E5 772 aa11.31□□□□□ -0.6
NDE1-201ENST00000396354 ERC2O15083 957 aa11.31□□□□□ -0.6
NDE1-201ENST00000396354 PDE1AP54750 535 aa11.31□□□□□ -0.6
NDE1-201ENST00000396354 HDGFL1Q5TGJ6 251 aa11.31□□□□□ -0.6
NDE1-201ENST00000396354 RPAP2Q8IXW5 612 aaPredicted RBP11.31□□□□□ -0.6
NDE1-201ENST00000396354 USP44Q9H0E7 712 aa11.31□□□□□ -0.6
NDE1-201ENST00000396354 NCOA3Q9Y6Q9 1424 aa11.31□□□□□ -0.6
NDE1-201ENST00000396354 CRYBG1Q9Y4K1 1723 aa11.31□□□□□ -0.6
NDE1-201ENST00000396354 SIPA1L3O60292 1781 aaPredicted RBP11.31□□□□□ -0.6
NDE1-201ENST00000396354 SURF6O75683 361 aaKnown RBP11.31□□□□□ -0.6
NDE1-201ENST00000396354 REC8O95072 547 aa11.31□□□□□ -0.6
NDE1-201ENST00000396354 DNTTIP2Q5QJE6 756 aaKnown RBP11.31□□□□□ -0.6
NDE1-201ENST00000396354 CCDC30Q5VVM6 783 aa11.31□□□□□ -0.6
NDE1-201ENST00000396354 ZNF830Q96NB3 372 aaPredicted RBP11.31□□□□□ -0.6
NDE1-201ENST00000396354 ZBTB12Q9Y330 459 aaPredicted RBP11.31□□□□□ -0.6
NDE1-201ENST00000396354 HMMRO75330 724 aa11.3□□□□□ -0.6
NDE1-201ENST00000396354 DDIT3P35638 169 aa11.3□□□□□ -0.6
NDE1-201ENST00000396354 SKOR2Q2VWA4 1001 aaPredicted RBP11.3□□□□□ -0.6
NDE1-201ENST00000396354 GPT2Q8TD30 523 aa11.3□□□□□ -0.6
NDE1-201ENST00000396354 SPG7Q9UQ90 795 aa11.3□□□□□ -0.6
NDE1-201ENST00000396354 DCCP43146 1447 aa11.3□□□□□ -0.6
NDE1-201ENST00000396354 CACNA1FO60840 1977 aa11.3□□□□□ -0.6
NDE1-201ENST00000396354 LTBP4Q8N2S1 1624 aa11.3□□□□□ -0.6
NDE1-201ENST00000396354 KCNH5Q8NCM2 988 aa11.3□□□□□ -0.6
NDE1-201ENST00000396354 TMX3Q96JJ7 454 aa11.3□□□□□ -0.6
NDE1-201ENST00000396354 CCT4P50991 539 aaKnown RBP11.3□□□□□ -0.6
NDE1-201ENST00000396354 IL25Q9H293 177 aa11.3□□□□□ -0.6
NDE1-201ENST00000396354 CIZ1Q9ULV3 898 aaPredicted RBP11.3□□□□□ -0.6
NDE1-201ENST00000396354 COL18A1P39060 1754 aa11.29□□□□□ -0.6
NDE1-201ENST00000396354 PPFIA3O75145 1194 aa11.29□□□□□ -0.6
NDE1-201ENST00000396354 SALL3Q9BXA9 1300 aa11.29□□□□□ -0.6
NDE1-201ENST00000396354 ADCY9O60503 1353 aa11.29□□□□□ -0.6
NDE1-201ENST00000396354 GNAI2P04899 355 aa11.29□□□□□ -0.6
NDE1-201ENST00000396354 CWC27Q6UX04 472 aaKnown RBP11.29□□□□□ -0.6
NDE1-201ENST00000396354 TMEM63CQ9P1W3 806 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms