RNA–Protein interactions for RNA: ENST00000396082.2

UPK3A-202, Transcript of uroplakin 3A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene UPK3A, Length 627 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3A-202ENST00000396082 CANXP27824 592 aaKnown RBP23.1■■□□□ 1.29
UPK3A-202ENST00000396082 CD2APQ9Y5K6 639 aa23.1■■□□□ 1.29
UPK3A-202ENST00000396082 ZPR1O75312 459 aa23.09■■□□□ 1.29
UPK3A-202ENST00000396082 GPR162Q16538 588 aa23.09■■□□□ 1.29
UPK3A-202ENST00000396082 SRP68Q9UHB9 627 aaKnown RBP23.09■■□□□ 1.29
UPK3A-202ENST00000396082 COL15A1P39059 1388 aa23.09■■□□□ 1.29
UPK3A-202ENST00000396082 USP42Q9H9J4 1324 aaKnown RBP23.08■■□□□ 1.29
UPK3A-202ENST00000396082 TAF7Q15545 349 aaPredicted RBP23.08■■□□□ 1.29
UPK3A-202ENST00000396082 CCDC146Q8IYE0 955 aa23.07■■□□□ 1.28
UPK3A-202ENST00000396082 ZNF330Q9Y3S2 320 aaPredicted RBP23.07■■□□□ 1.28
UPK3A-202ENST00000396082 RIPK4P57078 832 aa23.06■■□□□ 1.28
UPK3A-202ENST00000396082 THUMPD2Q9BTF0 503 aaKnown RBP23.06■■□□□ 1.28
UPK3A-202ENST00000396082 PARP3Q9Y6F1 533 aa23.06■■□□□ 1.28
UPK3A-202ENST00000396082 NPM2Q86SE8 214 aaKnown RBP23.05■■□□□ 1.28
UPK3A-202ENST00000396082 PNISRQ8TF01 805 aaKnown RBP23.05■■□□□ 1.28
UPK3A-202ENST00000396082 SNRPA1P09661 255 aaKnown RBP23.04■■□□□ 1.28
UPK3A-202ENST00000396082 LMOD3Q0VAK6 560 aa23.04■■□□□ 1.28
UPK3A-202ENST00000396082 USPL1Q5W0Q7 1092 aa23.04■■□□□ 1.28
UPK3A-202ENST00000396082 MIS18AQ9NYP9 233 aa23.04■■□□□ 1.28
UPK3A-202ENST00000396082 TMPOP42166 694 aaKnown RBP23.03■■□□□ 1.28
UPK3A-202ENST00000396082 FKBP8Q14318 412 aa23.03■■□□□ 1.28
UPK3A-202ENST00000396082 RUNDC1Q96C34 613 aa23.03■■□□□ 1.28
UPK3A-202ENST00000396082 NARFQ9UHQ1 456 aa23.03■■□□□ 1.28
UPK3A-202ENST00000396082 KDM3BQ7LBC6 1761 aa23.03■■□□□ 1.28
UPK3A-202ENST00000396082 A0A087WZG4 1122 aa23.02■■□□□ 1.28
UPK3A-202ENST00000396082 YY1P25490 414 aa23.02■■□□□ 1.28
UPK3A-202ENST00000396082 NEUROD2Q15784 382 aa23.02■■□□□ 1.28
UPK3A-202ENST00000396082 ADAMTS8Q9UP79 889 aa23.02■■□□□ 1.28
UPK3A-202ENST00000396082 RRP7AQ9Y3A4 280 aaKnown RBP23.02■■□□□ 1.28
UPK3A-202ENST00000396082 A1BGP04217 495 aa23.01■■□□□ 1.27
UPK3A-202ENST00000396082 EIF5P55010 431 aaKnown RBP23.01■■□□□ 1.27
UPK3A-202ENST00000396082 PRAMEF22A3QJZ6 481 aa23■■□□□ 1.27
UPK3A-202ENST00000396082 IL6STP40189 918 aaPredicted RBP23■■□□□ 1.27
UPK3A-202ENST00000396082 USP16Q9Y5T5 823 aa23■■□□□ 1.27
UPK3A-202ENST00000396082 KIF13BQ9NQT8 1826 aa22.98■■□□□ 1.27
UPK3A-202ENST00000396082 ANP32CO43423 234 aa22.98■■□□□ 1.27
UPK3A-202ENST00000396082 LAMB4A4D0S4 1761 aa22.98■■□□□ 1.27
UPK3A-202ENST00000396082 C10orf71Q711Q0 1435 aa22.98■■□□□ 1.27
UPK3A-202ENST00000396082 CHD4Q14839 1912 aa22.98■■□□□ 1.27
UPK3A-202ENST00000396082 DDR1Q08345 913 aa22.97■■□□□ 1.27
UPK3A-202ENST00000396082 TSPYL4Q9UJ04 414 aa22.97■■□□□ 1.27
UPK3A-202ENST00000396082 WWC3Q9ULE0 1092 aa22.97■■□□□ 1.27
UPK3A-202ENST00000396082 SCN7AQ01118 1682 aa22.97■■□□□ 1.27
UPK3A-202ENST00000396082 PIP4K2AP48426 406 aaPredicted RBP22.96■■□□□ 1.27
UPK3A-202ENST00000396082 TBC1D2BQ9UPU7 963 aa22.96■■□□□ 1.27
UPK3A-202ENST00000396082 GRIN3BO60391 1043 aa22.95■■□□□ 1.26
UPK3A-202ENST00000396082 YBX3P16989 372 aaKnown RBP eCLIP22.95■■□□□ 1.26
UPK3A-202ENST00000396082 POLRMTO00411 1230 aaKnown RBP22.94■■□□□ 1.26
UPK3A-202ENST00000396082 TM4SF1P30408 202 aa22.94■■□□□ 1.26
UPK3A-202ENST00000396082 EIF4A1P60842 406 aaKnown RBP22.94■■□□□ 1.26
UPK3A-202ENST00000396082 NFIXQ14938 502 aa22.94■■□□□ 1.26
UPK3A-202ENST00000396082 BCL2L12Q9HB09 334 aa22.94■■□□□ 1.26
UPK3A-202ENST00000396082 N4BP2Q86UW6 1770 aaPredicted RBP22.94■■□□□ 1.26
UPK3A-202ENST00000396082 PXDNLA1KZ92 1463 aa22.93■■□□□ 1.26
UPK3A-202ENST00000396082 TGFB2P61812 414 aa22.93■■□□□ 1.26
UPK3A-202ENST00000396082 BICDL1Q6ZP65 573 aa22.93■■□□□ 1.26
UPK3A-202ENST00000396082 GIGYF1O75420 1035 aaPredicted RBP22.92■■□□□ 1.26
UPK3A-202ENST00000396082 DZIP3Q86Y13 1208 aaKnown RBP22.92■■□□□ 1.26
UPK3A-202ENST00000396082 KIAA1551Q9HCM1 1747 aa22.91■■□□□ 1.26
UPK3A-202ENST00000396082 AFDNP55196 1824 aaKnown RBP22.91■■□□□ 1.26
UPK3A-202ENST00000396082 BCORQ6W2J9 1755 aa22.91■■□□□ 1.26
UPK3A-202ENST00000396082 A0A0G2JLW4 131 aa22.9■■□□□ 1.26
UPK3A-202ENST00000396082 BABAM1Q9NWV8 329 aa22.9■■□□□ 1.26
UPK3A-202ENST00000396082 LAS1LQ9Y4W2 734 aaKnown RBP22.9■■□□□ 1.26
UPK3A-202ENST00000396082 SERPINB2P05120 415 aa22.89■■□□□ 1.25
UPK3A-202ENST00000396082 DPEP1P16444 411 aa22.89■■□□□ 1.25
UPK3A-202ENST00000396082 CCDC184Q52MB2 194 aa22.89■■□□□ 1.25
UPK3A-202ENST00000396082 MRS2Q9HD23 443 aa22.89■■□□□ 1.25
UPK3A-202ENST00000396082 TRIM35Q9UPQ4 493 aa22.89■■□□□ 1.25
UPK3A-202ENST00000396082 NBPF26B4DH59 902 aa22.88■■□□□ 1.25
UPK3A-202ENST00000396082 APAF1O14727 1248 aa22.88■■□□□ 1.25
UPK3A-202ENST00000396082 CAMTA2O94983 1202 aa22.88■■□□□ 1.25
UPK3A-202ENST00000396082 TBC1D9BQ66K14 1250 aa22.88■■□□□ 1.25
UPK3A-202ENST00000396082 NBPF10Q6P3W6 841 aaKnown RBP22.88■■□□□ 1.25
UPK3A-202ENST00000396082 NBPF15Q8N660 670 aa22.88■■□□□ 1.25
UPK3A-202ENST00000396082 BCS1LQ9Y276 419 aa22.87■■□□□ 1.25
UPK3A-202ENST00000396082 ZNF652Q9Y2D9 606 aa22.87■■□□□ 1.25
UPK3A-202ENST00000396082 NRXN2Q9P2S2 1712 aa22.87■■□□□ 1.25
UPK3A-202ENST00000396082 NPHP1O15259 732 aa22.86■■□□□ 1.25
UPK3A-202ENST00000396082 CARMIL3Q8ND23 1372 aa22.86■■□□□ 1.25
UPK3A-202ENST00000396082 NGEFQ8N5V2 710 aa22.85■■□□□ 1.25
UPK3A-202ENST00000396082 SETDB2Q96T68 719 aa22.85■■□□□ 1.25
UPK3A-202ENST00000396082 BRCA1P38398 1863 aaKnown RBP22.83■■□□□ 1.25
UPK3A-202ENST00000396082 MYL6BP14649 208 aa22.83■■□□□ 1.25
UPK3A-202ENST00000396082 EIF2S2P20042 333 aaKnown RBP22.83■■□□□ 1.25
UPK3A-202ENST00000396082 PIM2Q9P1W9 311 aa22.83■■□□□ 1.25
UPK3A-202ENST00000396082 CHL1O00533 1208 aa22.82■■□□□ 1.24
UPK3A-202ENST00000396082 CHRNA5P30532 468 aa22.82■■□□□ 1.24
UPK3A-202ENST00000396082 CLEC4GQ6UXB4 293 aa22.82■■□□□ 1.24
UPK3A-202ENST00000396082 ERBB4Q15303 1308 aa22.82■■□□□ 1.24
UPK3A-202ENST00000396082 CALD1Q05682 793 aaKnown RBP22.81■■□□□ 1.24
UPK3A-202ENST00000396082 KIF6Q6ZMV9 814 aa22.81■■□□□ 1.24
UPK3A-202ENST00000396082 CNBD1Q8NA66 436 aa22.8■■□□□ 1.24
UPK3A-202ENST00000396082 KCNA3P22001 575 aa22.79■■□□□ 1.24
UPK3A-202ENST00000396082 DALRD3Q5D0E6 543 aaKnown RBP22.79■■□□□ 1.24
UPK3A-202ENST00000396082 CFAP44Q96MT7 982 aa22.79■■□□□ 1.24
UPK3A-202ENST00000396082 UTRNP46939 3433 aa22.79■■□□□ 1.24
UPK3A-202ENST00000396082 RGL2O15211 777 aa22.78■■□□□ 1.24
UPK3A-202ENST00000396082 ST5P78524 1137 aa22.78■■□□□ 1.24
UPK3A-202ENST00000396082 PRR5LQ6MZQ0 368 aa22.78■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms