RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 LARP6Q9BRS8 491 aaKnown RBP25.07■■□□□ 1.6
CLK3-202ENST00000395066 GDPD2Q9HCC8 539 aa25.06■■□□□ 1.6
CLK3-202ENST00000395066 STAP2Q9UGK3 403 aa25.06■■□□□ 1.6
CLK3-202ENST00000395066 SOS1Q07889 1333 aaPredicted RBP25.06■■□□□ 1.6
CLK3-202ENST00000395066 DTNBO60941 627 aa25.05■■□□□ 1.6
CLK3-202ENST00000395066 TPRNQ4KMQ1 711 aa25.04■■□□□ 1.6
CLK3-202ENST00000395066 HS1BP3Q53T59 392 aa25.04■■□□□ 1.6
CLK3-202ENST00000395066 SRGAP3O43295 1099 aa25.04■■□□□ 1.6
CLK3-202ENST00000395066 PDZRN4Q6ZMN7 1036 aaPredicted RBP25.04■■□□□ 1.6
CLK3-202ENST00000395066 SSH3Q8TE77 659 aa25.04■■□□□ 1.6
CLK3-202ENST00000395066 CHPF2Q9P2E5 772 aa25.04■■□□□ 1.6
CLK3-202ENST00000395066 BRD1O95696 1058 aa25.03■■□□□ 1.6
CLK3-202ENST00000395066 CUL4AQ13619 759 aa25.03■■□□□ 1.6
CLK3-202ENST00000395066 MARF1Q9Y4F3 1742 aaKnown RBP25.03■■□□□ 1.6
CLK3-202ENST00000395066 RNF214Q8ND24 703 aa25.02■■□□□ 1.6
CLK3-202ENST00000395066 SRCIN1Q9C0H9 1055 aa25.02■■□□□ 1.6
CLK3-202ENST00000395066 RHPN1Q8TCX5 695 aa25.01■■□□□ 1.59
CLK3-202ENST00000395066 NBPF6Q5VWK0 638 aa25.01■■□□□ 1.59
CLK3-202ENST00000395066 PDLIM2Q96JY6 352 aa25.01■■□□□ 1.59
CLK3-202ENST00000395066 NBPF4Q96M43 638 aa25.01■■□□□ 1.59
CLK3-202ENST00000395066 PI4KAP2A4QPH2 592 aa25■■□□□ 1.59
CLK3-202ENST00000395066 PI4KAP1Q8N8J0 262 aa25■■□□□ 1.59
CLK3-202ENST00000395066 PI4K2BQ8TCG2 481 aa25■■□□□ 1.59
CLK3-202ENST00000395066 MCM2P49736 904 aa24.99■■□□□ 1.59
CLK3-202ENST00000395066 ANAPC15P60006 121 aa24.99■■□□□ 1.59
CLK3-202ENST00000395066 NOL7Q9UMY1 257 aaKnown RBP24.99■■□□□ 1.59
CLK3-202ENST00000395066 LRRC59Q96AG4 307 aaKnown RBP24.99■■□□□ 1.59
CLK3-202ENST00000395066 PDCL3Q9H2J4 239 aa24.99■■□□□ 1.59
CLK3-202ENST00000395066 GADD45BO75293 160 aaPredicted RBP24.98■■□□□ 1.59
CLK3-202ENST00000395066 EIF4A1P60842 406 aaKnown RBP24.98■■□□□ 1.59
CLK3-202ENST00000395066 LRSAM1Q6UWE0 723 aa24.98■■□□□ 1.59
CLK3-202ENST00000395066 ARHGAP23Q9P227 1491 aa24.97■■□□□ 1.59
CLK3-202ENST00000395066 CPA1P15085 419 aa24.97■■□□□ 1.59
CLK3-202ENST00000395066 HSPA4P34932 840 aa24.97■■□□□ 1.59
CLK3-202ENST00000395066 TERF1P54274 439 aa24.97■■□□□ 1.59
CLK3-202ENST00000395066 POLA2Q14181 598 aa24.97■■□□□ 1.59
CLK3-202ENST00000395066 SPG7Q9UQ90 795 aa24.97■■□□□ 1.59
CLK3-202ENST00000395066 SLIT1O75093 1534 aa24.97■■□□□ 1.59
CLK3-202ENST00000395066 CWC27Q6UX04 472 aaKnown RBP24.97■■□□□ 1.59
CLK3-202ENST00000395066 MPRIPQ6WCQ1 1025 aa24.97■■□□□ 1.59
CLK3-202ENST00000395066 ZMYND15Q9H091 742 aa24.97■■□□□ 1.59
CLK3-202ENST00000395066 RASEFQ8IZ41 740 aa24.96■■□□□ 1.59
CLK3-202ENST00000395066 PXDNLA1KZ92 1463 aa24.95■■□□□ 1.58
CLK3-202ENST00000395066 BEND3Q5T5X7 828 aa24.95■■□□□ 1.58
CLK3-202ENST00000395066 CACNA1FO60840 1977 aa24.95■■□□□ 1.58
CLK3-202ENST00000395066 ZNF500O60304 480 aaPredicted RBP24.95■■□□□ 1.58
CLK3-202ENST00000395066 THEMISQ8N1K5 641 aaPredicted RBP24.95■■□□□ 1.58
CLK3-202ENST00000395066 DNAAF4Q8WXU2 420 aa24.95■■□□□ 1.58
CLK3-202ENST00000395066 INTS4Q96HW7 963 aaKnown RBP24.94■■□□□ 1.58
CLK3-202ENST00000395066 PKNOX2Q96KN3 472 aa24.94■■□□□ 1.58
CLK3-202ENST00000395066 EIF2AK3Q9NZJ5 1116 aaKnown RBP24.94■■□□□ 1.58
CLK3-202ENST00000395066 SGSM2O43147 1006 aa24.94■■□□□ 1.58
CLK3-202ENST00000395066 SNX14Q9Y5W7 946 aa24.94■■□□□ 1.58
CLK3-202ENST00000395066 CEMIPQ8WUJ3 1361 aa24.93■■□□□ 1.58
CLK3-202ENST00000395066 RAB11FIP3O75154 756 aa24.93■■□□□ 1.58
CLK3-202ENST00000395066 OS9Q13438 667 aaPredicted RBP24.93■■□□□ 1.58
CLK3-202ENST00000395066 KIF1BPQ96EK5 621 aa24.93■■□□□ 1.58
CLK3-202ENST00000395066 PHF8Q9UPP1 1060 aa24.92■■□□□ 1.58
CLK3-202ENST00000395066 AOX1Q06278 1338 aa24.92■■□□□ 1.58
CLK3-202ENST00000395066 PRAMEF22A3QJZ6 481 aa24.92■■□□□ 1.58
CLK3-202ENST00000395066 PA2G4Q9UQ80 394 aaKnown RBP24.92■■□□□ 1.58
CLK3-202ENST00000395066 R3HCC1Q9Y3T6 440 aaKnown RBP24.92■■□□□ 1.58
CLK3-202ENST00000395066 RAD50Q92878 1312 aa24.92■■□□□ 1.58
CLK3-202ENST00000395066 LTN1O94822 1766 aa24.91■■□□□ 1.58
CLK3-202ENST00000395066 N4BP2Q86UW6 1770 aaPredicted RBP24.91■■□□□ 1.58
CLK3-202ENST00000395066 PROSER3Q2NL68 480 aa24.91■■□□□ 1.58
CLK3-202ENST00000395066 DDX54Q8TDD1 881 aaKnown RBP24.91■■□□□ 1.58
CLK3-202ENST00000395066 LSG1Q9H089 658 aaKnown RBP24.91■■□□□ 1.58
CLK3-202ENST00000395066 TCHHQ07283 1943 aa24.91■■□□□ 1.58
CLK3-202ENST00000395066 BTBD11A6QL63 1104 aa24.91■■□□□ 1.58
CLK3-202ENST00000395066 MBD3O95983 291 aa24.91■■□□□ 1.58
CLK3-202ENST00000395066 USP48Q86UV5 1035 aa24.91■■□□□ 1.58
CLK3-202ENST00000395066 BABAM1Q9NWV8 329 aa24.91■■□□□ 1.58
CLK3-202ENST00000395066 AK2P54819 239 aa24.9■■□□□ 1.58
CLK3-202ENST00000395066 XPCQ01831 940 aaPredicted RBP24.9■■□□□ 1.58
CLK3-202ENST00000395066 IP6K1Q92551 441 aa24.9■■□□□ 1.58
CLK3-202ENST00000395066 ADCY9O60503 1353 aa24.9■■□□□ 1.58
CLK3-202ENST00000395066 ANKARQ7Z5J8 1434 aa24.9■■□□□ 1.58
CLK3-202ENST00000395066 TEFQ10587 303 aa24.9■■□□□ 1.58
CLK3-202ENST00000395066 ZNF530Q6P9A1 599 aaPredicted RBP24.9■■□□□ 1.58
CLK3-202ENST00000395066 ZKSCAN5Q9Y2L8 839 aa24.9■■□□□ 1.58
CLK3-202ENST00000395066 RPAP1Q9BWH6 1393 aaPredicted RBP24.9■■□□□ 1.58
CLK3-202ENST00000395066 CNTROBQ8N137 903 aa24.89■■□□□ 1.57
CLK3-202ENST00000395066 RGPD2P0DJD1 1756 aa24.88■■□□□ 1.57
CLK3-202ENST00000395066 LARGE1O95461 756 aa24.88■■□□□ 1.57
CLK3-202ENST00000395066 CWF19L2Q2TBE0 894 aaKnown RBP24.88■■□□□ 1.57
CLK3-202ENST00000395066 RUFY3Q7L099 469 aa24.88■■□□□ 1.57
CLK3-202ENST00000395066 MPNDQ8N594 471 aa24.87■■□□□ 1.57
CLK3-202ENST00000395066 CNPY2Q9Y2B0 182 aa24.87■■□□□ 1.57
CLK3-202ENST00000395066 IL17RAQ96F46 866 aa24.87■■□□□ 1.57
CLK3-202ENST00000395066 PTH1RQ03431 593 aa24.86■■□□□ 1.57
CLK3-202ENST00000395066 TTC14Q96N46 770 aa24.86■■□□□ 1.57
CLK3-202ENST00000395066 MAP3K2Q9Y2U5 619 aa24.86■■□□□ 1.57
CLK3-202ENST00000395066 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP24.86■■□□□ 1.57
CLK3-202ENST00000395066 MCM5P33992 734 aa24.86■■□□□ 1.57
CLK3-202ENST00000395066 ESCO1Q5FWF5 840 aa24.86■■□□□ 1.57
CLK3-202ENST00000395066 WDR33Q9C0J8 1336 aaKnown RBP24.86■■□□□ 1.57
CLK3-202ENST00000395066 CASTP20810 708 aaKnown RBP24.85■■□□□ 1.57
CLK3-202ENST00000395066 RBM10P98175 930 aaKnown RBP24.85■■□□□ 1.57
CLK3-202ENST00000395066 CCDC39Q9UFE4 941 aa24.85■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms