RNA–Protein interactions for RNA: ENST00000393077.2

VTI1A-201, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VTI1A, Length 4,131 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-201ENST00000393077 MKRN1Q9UHC7 482 aaKnown RBP8.93□□□□□ -0.98
VTI1A-201ENST00000393077 MYO6Q9UM54 1294 aa8.93□□□□□ -0.98
VTI1A-201ENST00000393077 DNMT1P26358 1616 aaKnown RBP8.93□□□□□ -0.98
VTI1A-201ENST00000393077 DENND4BO75064 1496 aaPredicted RBP8.93□□□□□ -0.98
VTI1A-201ENST00000393077 MX1P20591 662 aa8.93□□□□□ -0.98
VTI1A-201ENST00000393077 CLNS1AP54105 237 aaKnown RBP8.93□□□□□ -0.98
VTI1A-201ENST00000393077 MAP3K11Q16584 847 aa8.93□□□□□ -0.98
VTI1A-201ENST00000393077 NBPF6Q5VWK0 638 aa8.93□□□□□ -0.98
VTI1A-201ENST00000393077 CHD1LQ86WJ1 897 aa8.93□□□□□ -0.98
VTI1A-201ENST00000393077 NBPF5PQ86XG9 351 aaPredicted RBP8.93□□□□□ -0.98
VTI1A-201ENST00000393077 NBPF4Q96M43 638 aa8.93□□□□□ -0.98
VTI1A-201ENST00000393077 NOP2P46087 812 aaKnown RBP8.93□□□□□ -0.98
VTI1A-201ENST00000393077 MTHFSP49914 203 aa8.93□□□□□ -0.98
VTI1A-201ENST00000393077 TRDNQ13061 729 aa8.93□□□□□ -0.98
VTI1A-201ENST00000393077 SEMA3FQ13275 785 aa8.93□□□□□ -0.98
VTI1A-201ENST00000393077 RBBP5Q15291 538 aaKnown RBP8.93□□□□□ -0.98
VTI1A-201ENST00000393077 MUM1L1Q5H9M0 696 aa8.93□□□□□ -0.98
VTI1A-201ENST00000393077 MED4Q9NPJ6 270 aa8.93□□□□□ -0.98
VTI1A-201ENST00000393077 SMC3Q9UQE7 1217 aa8.93□□□□□ -0.98
VTI1A-201ENST00000393077 EBAG9O00559 213 aa8.92□□□□□ -0.98
VTI1A-201ENST00000393077 ZNF513Q8N8E2 541 aaPredicted RBP8.92□□□□□ -0.98
VTI1A-201ENST00000393077 NUP62CLQ9H1M0 184 aa8.92□□□□□ -0.98
VTI1A-201ENST00000393077 TMCO5BA8MYB1 307 aa8.92□□□□□ -0.98
VTI1A-201ENST00000393077 LTV1Q96GA3 475 aaPredicted RBP8.92□□□□□ -0.98
VTI1A-201ENST00000393077 NKTRP30414 1462 aaKnown RBP8.92□□□□□ -0.98
VTI1A-201ENST00000393077 FAM135AQ9P2D6 1515 aa8.92□□□□□ -0.98
VTI1A-201ENST00000393077 EZRP15311 586 aaKnown RBP8.92□□□□□ -0.98
VTI1A-201ENST00000393077 CEBPAP49715 358 aaPredicted RBP8.92□□□□□ -0.98
VTI1A-201ENST00000393077 ERCC6L2Q5T890 1561 aa8.92□□□□□ -0.98
VTI1A-201ENST00000393077 EIF3CLB5ME19 914 aaKnown RBP8.91□□□□□ -0.98
VTI1A-201ENST00000393077 NAP1L1P55209 391 aaKnown RBP8.91□□□□□ -0.98
VTI1A-201ENST00000393077 JAKMIP3Q5VZ66 844 aa8.91□□□□□ -0.98
VTI1A-201ENST00000393077 ZGPATQ8N5A5 531 aaKnown RBP8.91□□□□□ -0.98
VTI1A-201ENST00000393077 EIF3CQ99613 913 aaKnown RBP8.91□□□□□ -0.98
VTI1A-201ENST00000393077 POLKQ9UBT6 870 aa8.91□□□□□ -0.98
VTI1A-201ENST00000393077 KDM5BQ9UGL1 1544 aa8.91□□□□□ -0.98
VTI1A-201ENST00000393077 CT47B1P0C2W7 299 aaPredicted RBP8.91□□□□□ -0.98
VTI1A-201ENST00000393077 DHX8Q14562 1220 aaKnown RBP8.91□□□□□ -0.98
VTI1A-201ENST00000393077 NBPF11Q86T75 865 aa8.91□□□□□ -0.98
VTI1A-201ENST00000393077 EFCAB13Q8IY85 973 aa8.91□□□□□ -0.98
VTI1A-201ENST00000393077 IPO7O95373 1038 aaKnown RBP8.91□□□□□ -0.98
VTI1A-201ENST00000393077 EIF5P55010 431 aaKnown RBP8.91□□□□□ -0.98
VTI1A-201ENST00000393077 TBC1D9Q6ZT07 1266 aa8.91□□□□□ -0.98
VTI1A-201ENST00000393077 USP48Q86UV5 1035 aa8.91□□□□□ -0.98
VTI1A-201ENST00000393077 FAM200AQ8TCP9 573 aa8.91□□□□□ -0.98
VTI1A-201ENST00000393077 SMARCC1Q92922 1105 aaPredicted RBP8.91□□□□□ -0.98
VTI1A-201ENST00000393077 ZNF692Q9BU19 519 aaPredicted RBP8.91□□□□□ -0.98
VTI1A-201ENST00000393077 NAT10Q9H0A0 1025 aaKnown RBP8.91□□□□□ -0.98
VTI1A-201ENST00000393077 KDM6BO15054 1643 aa8.91□□□□□ -0.98
VTI1A-201ENST00000393077 ABCA8O94911 1581 aa8.91□□□□□ -0.98
VTI1A-201ENST00000393077 ABCC10Q5T3U5 1492 aa8.91□□□□□ -0.98
VTI1A-201ENST00000393077 KIF3CO14782 793 aa8.9□□□□□ -0.98
VTI1A-201ENST00000393077 PNMA6AP0CW24 399 aaPredicted RBP8.9□□□□□ -0.98
VTI1A-201ENST00000393077 CAMK4Q16566 473 aa8.9□□□□□ -0.98
VTI1A-201ENST00000393077 DYDC1Q8WWB3 177 aa8.9□□□□□ -0.98
VTI1A-201ENST00000393077 FBXW7Q969H0 707 aa8.9□□□□□ -0.98
VTI1A-201ENST00000393077 RAD50Q92878 1312 aa8.9□□□□□ -0.98
VTI1A-201ENST00000393077 ANKRD65E5RJM6 399 aa8.9□□□□□ -0.98
VTI1A-201ENST00000393077 ELL2O00472 640 aaPredicted RBP8.9□□□□□ -0.98
VTI1A-201ENST00000393077 PHACTR2O75167 634 aa8.9□□□□□ -0.98
VTI1A-201ENST00000393077 NEDD9Q14511 834 aa8.9□□□□□ -0.98
VTI1A-201ENST00000393077 SMARCE1Q969G3 411 aa8.9□□□□□ -0.98
VTI1A-201ENST00000393077 SIRT1Q96EB6 747 aa8.9□□□□□ -0.98
VTI1A-201ENST00000393077 COG3Q96JB2 828 aa8.9□□□□□ -0.98
VTI1A-201ENST00000393077 JPH2Q9BR39 696 aaPredicted RBP8.9□□□□□ -0.98
VTI1A-201ENST00000393077 CABP1Q9NZU7 370 aa8.9□□□□□ -0.98
VTI1A-201ENST00000393077 DISP3Q9P2K9 1392 aa8.9□□□□□ -0.98
VTI1A-201ENST00000393077 LIG3P49916 1009 aa8.9□□□□□ -0.98
VTI1A-201ENST00000393077 LRMPQ12912 555 aa8.9□□□□□ -0.98
VTI1A-201ENST00000393077 BMP2KLQ5H9B9 411 aa8.9□□□□□ -0.98
VTI1A-201ENST00000393077 WAPLQ7Z5K2 1190 aa8.9□□□□□ -0.98
VTI1A-201ENST00000393077 DUOX2Q9NRD8 1548 aa8.9□□□□□ -0.99
VTI1A-201ENST00000393077 A0A087WUV0 522 aaPredicted RBP8.9□□□□□ -0.99
VTI1A-201ENST00000393077 PEX19P40855 299 aa8.9□□□□□ -0.99
VTI1A-201ENST00000393077 UBE2HP62256 183 aa8.9□□□□□ -0.99
VTI1A-201ENST00000393077 EXOC4Q96A65 974 aa8.9□□□□□ -0.99
VTI1A-201ENST00000393077 RUFY1Q96T51 708 aa8.9□□□□□ -0.99
VTI1A-201ENST00000393077 SRRTQ9BXP5 876 aaKnown RBP8.9□□□□□ -0.99
VTI1A-201ENST00000393077 NOS1P29475 1434 aa8.89□□□□□ -0.99
VTI1A-201ENST00000393077 ANAPC15P60006 121 aa8.89□□□□□ -0.99
VTI1A-201ENST00000393077 TRIM6Q9C030 488 aaPredicted RBP8.89□□□□□ -0.99
VTI1A-201ENST00000393077 ANO2Q9NQ90 1003 aa8.89□□□□□ -0.99
VTI1A-201ENST00000393077 DNAI1Q9UI46 699 aa8.89□□□□□ -0.99
VTI1A-201ENST00000393077 MBD5Q9P267 1494 aa8.89□□□□□ -0.99
VTI1A-201ENST00000393077 SHANK2Q9UPX8 1470 aa8.89□□□□□ -0.99
VTI1A-201ENST00000393077 HMMRO75330 724 aa8.89□□□□□ -0.99
VTI1A-201ENST00000393077 SFPQP23246 707 aaKnown RBP eCLIP8.89□□□□□ -0.99
VTI1A-201ENST00000393077 AMPHP49418 695 aa8.89□□□□□ -0.99
VTI1A-201ENST00000393077 CDK19Q9BWU1 502 aa8.89□□□□□ -0.99
VTI1A-201ENST00000393077 LRRCC1Q9C099 1032 aa8.89□□□□□ -0.99
VTI1A-201ENST00000393077 GBP3Q9H0R5 595 aa8.89□□□□□ -0.99
VTI1A-201ENST00000393077 RPGRIP1LQ68CZ1 1315 aa8.89□□□□□ -0.99
VTI1A-201ENST00000393077 ADGRL2O95490 1459 aa8.89□□□□□ -0.99
VTI1A-201ENST00000393077 A2MP01023 1474 aa8.89□□□□□ -0.99
VTI1A-201ENST00000393077 TTC36A6NLP5 189 aa8.89□□□□□ -0.99
VTI1A-201ENST00000393077 ERCC3P19447 782 aa8.89□□□□□ -0.99
VTI1A-201ENST00000393077 INPP5BP32019 993 aa8.89□□□□□ -0.99
VTI1A-201ENST00000393077 NBPF9Q3BBW0 867 aa8.89□□□□□ -0.99
VTI1A-201ENST00000393077 RNF187Q5TA31 235 aaPredicted RBP8.89□□□□□ -0.99
VTI1A-201ENST00000393077 RPUSD2Q8IZ73 545 aaKnown RBP8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms