RNA–Protein interactions for RNA: ENST00000392456.3

CCDC50-202, Transcript of coiled-coil domain containing 50, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CCDC50, Length 2,454 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50-202ENST00000392456 PCDH11YQ9BZA8 1340 aa23.59■■□□□ 1.37
CCDC50-202ENST00000392456 SIPA1L3O60292 1781 aaPredicted RBP23.58■■□□□ 1.37
CCDC50-202ENST00000392456 PLEKHG2Q9H7P9 1386 aa23.58■■□□□ 1.37
CCDC50-202ENST00000392456 GOLGA6L3A6NEY3 463 aa23.58■■□□□ 1.37
CCDC50-202ENST00000392456 API5Q9BZZ5 524 aaKnown RBP23.58■■□□□ 1.37
CCDC50-202ENST00000392456 F6X3S4 739 aa23.57■■□□□ 1.36
CCDC50-202ENST00000392456 ZNF790Q6PG37 636 aa23.57■■□□□ 1.36
CCDC50-202ENST00000392456 ZBTB40Q9NUA8 1239 aa23.57■■□□□ 1.36
CCDC50-202ENST00000392456 STK31Q9BXU1 1019 aa23.57■■□□□ 1.36
CCDC50-202ENST00000392456 PARP4Q9UKK3 1724 aaKnown RBP23.57■■□□□ 1.36
CCDC50-202ENST00000392456 ZBTB7BO15156 539 aaPredicted RBP23.56■■□□□ 1.36
CCDC50-202ENST00000392456 GIGYF1O75420 1035 aaPredicted RBP23.56■■□□□ 1.36
CCDC50-202ENST00000392456 ANXA1P04083 346 aa23.56■■□□□ 1.36
CCDC50-202ENST00000392456 DMTNQ08495 405 aa23.56■■□□□ 1.36
CCDC50-202ENST00000392456 HEG1Q9ULI3 1381 aa23.56■■□□□ 1.36
CCDC50-202ENST00000392456 KIAA1211Q6ZU35 1233 aa23.56■■□□□ 1.36
CCDC50-202ENST00000392456 PHAXQ9H814 394 aaKnown RBP23.55■■□□□ 1.36
CCDC50-202ENST00000392456 HSP90AB1P08238 724 aaKnown RBP23.55■■□□□ 1.36
CCDC50-202ENST00000392456 CABP4P57796 275 aa23.55■■□□□ 1.36
CCDC50-202ENST00000392456 CENPQQ7L2Z9 268 aaPredicted RBP23.55■■□□□ 1.36
CCDC50-202ENST00000392456 ZNF830Q96NB3 372 aaPredicted RBP23.54■■□□□ 1.36
CCDC50-202ENST00000392456 CHPF2Q9P2E5 772 aa23.54■■□□□ 1.36
CCDC50-202ENST00000392456 FLIIQ13045 1269 aa23.54■■□□□ 1.36
CCDC50-202ENST00000392456 SHANK3Q9BYB0 1731 aa23.54■■□□□ 1.36
CCDC50-202ENST00000392456 NKX1-1Q15270 411 aaPredicted RBP23.53■■□□□ 1.36
CCDC50-202ENST00000392456 ZNF496Q96IT1 587 aaPredicted RBP23.53■■□□□ 1.36
CCDC50-202ENST00000392456 PTPRCP08575 1304 aa23.53■■□□□ 1.36
CCDC50-202ENST00000392456 C1orf115Q9H7X2 142 aa23.53■■□□□ 1.36
CCDC50-202ENST00000392456 PLCH1Q4KWH8 1693 aa23.52■■□□□ 1.36
CCDC50-202ENST00000392456 SOS1Q07889 1333 aaPredicted RBP23.52■■□□□ 1.36
CCDC50-202ENST00000392456 DISP2A7MBM2 1401 aa23.52■■□□□ 1.36
CCDC50-202ENST00000392456 MRC1P22897 1456 aa23.51■■□□□ 1.35
CCDC50-202ENST00000392456 HOXB7P09629 217 aa23.51■■□□□ 1.35
CCDC50-202ENST00000392456 PROSER3Q2NL68 480 aa23.51■■□□□ 1.35
CCDC50-202ENST00000392456 PPP4R3BQ5MIZ7 849 aa23.51■■□□□ 1.35
CCDC50-202ENST00000392456 INTS3Q68E01 1043 aaKnown RBP23.51■■□□□ 1.35
CCDC50-202ENST00000392456 C8orf37Q96NL8 207 aa23.51■■□□□ 1.35
CCDC50-202ENST00000392456 JCADQ9P266 1359 aa23.5■■□□□ 1.35
CCDC50-202ENST00000392456 FKBP5Q13451 457 aaPredicted RBP23.5■■□□□ 1.35
CCDC50-202ENST00000392456 SLC4A10Q6U841 1118 aa23.5■■□□□ 1.35
CCDC50-202ENST00000392456 SPATA31A1Q5TZJ5 1347 aa23.5■■□□□ 1.35
CCDC50-202ENST00000392456 BRD2P25440 801 aaKnown RBP23.49■■□□□ 1.35
CCDC50-202ENST00000392456 HSPA1LP34931 641 aa23.49■■□□□ 1.35
CCDC50-202ENST00000392456 SLIT2O94813 1529 aa23.48■■□□□ 1.35
CCDC50-202ENST00000392456 TERF1P54274 439 aa23.48■■□□□ 1.35
CCDC50-202ENST00000392456 ERVV-2B6SEH9 535 aa23.47■■□□□ 1.35
CCDC50-202ENST00000392456 ZFP91Q96JP5 570 aaPredicted RBP23.47■■□□□ 1.35
CCDC50-202ENST00000392456 NGLY1Q96IV0 654 aa23.47■■□□□ 1.35
CCDC50-202ENST00000392456 CCDC9Q9Y3X0 531 aaKnown RBP23.47■■□□□ 1.35
CCDC50-202ENST00000392456 USP16Q9Y5T5 823 aa23.47■■□□□ 1.35
CCDC50-202ENST00000392456 NRAPQ86VF7 1730 aa23.46■■□□□ 1.35
CCDC50-202ENST00000392456 TTC5Q8N0Z6 440 aa23.46■■□□□ 1.35
CCDC50-202ENST00000392456 PRDM10Q9NQV6 1147 aa23.45■■□□□ 1.35
CCDC50-202ENST00000392456 SPATA31A5Q5VU36 1347 aa23.45■■□□□ 1.34
CCDC50-202ENST00000392456 SPATA31A7Q8IWB4 1347 aa23.45■■□□□ 1.34
CCDC50-202ENST00000392456 EXOC5O00471 708 aa23.45■■□□□ 1.34
CCDC50-202ENST00000392456 PIP4K2AP48426 406 aaPredicted RBP23.44■■□□□ 1.34
CCDC50-202ENST00000392456 PDIA6Q15084 440 aa23.44■■□□□ 1.34
CCDC50-202ENST00000392456 PLCD3Q8N3E9 789 aa23.44■■□□□ 1.34
CCDC50-202ENST00000392456 MEIS3Q99687 375 aa23.44■■□□□ 1.34
CCDC50-202ENST00000392456 LRP6O75581 1613 aa23.44■■□□□ 1.34
CCDC50-202ENST00000392456 SIRT2Q8IXJ6 389 aa23.43■■□□□ 1.34
CCDC50-202ENST00000392456 RWDD1Q9H446 243 aaPredicted RBP23.43■■□□□ 1.34
CCDC50-202ENST00000392456 DBF4Q9UBU7 674 aaPredicted RBP23.43■■□□□ 1.34
CCDC50-202ENST00000392456 UNC5CLQ8IV45 518 aa23.42■■□□□ 1.34
CCDC50-202ENST00000392456 BCL9LQ86UU0 1499 aa23.42■■□□□ 1.34
CCDC50-202ENST00000392456 PTCD1O75127 700 aaKnown RBP23.42■■□□□ 1.34
CCDC50-202ENST00000392456 MRE11P49959 708 aa23.42■■□□□ 1.34
CCDC50-202ENST00000392456 FMNL2Q96PY5 1086 aa23.42■■□□□ 1.34
CCDC50-202ENST00000392456 TOGARAM1Q9Y4F4 1720 aa23.42■■□□□ 1.34
CCDC50-202ENST00000392456 KAT6BQ8WYB5 2073 aa23.41■■□□□ 1.34
CCDC50-202ENST00000392456 PIGBQ92521 554 aa23.41■■□□□ 1.34
CCDC50-202ENST00000392456 FAM13BQ9NYF5 915 aa23.41■■□□□ 1.34
CCDC50-202ENST00000392456 CHRM1P11229 460 aaPredicted RBP23.41■■□□□ 1.34
CCDC50-202ENST00000392456 ZSCAN20P17040 1043 aaPredicted RBP23.41■■□□□ 1.34
CCDC50-202ENST00000392456 C5P01031 1676 aa23.41■■□□□ 1.34
CCDC50-202ENST00000392456 CACNA1FO60840 1977 aa23.41■■□□□ 1.34
CCDC50-202ENST00000392456 PI4KAP2A4QPH2 592 aa23.4■■□□□ 1.34
CCDC50-202ENST00000392456 SNRPA1P09661 255 aaKnown RBP23.4■■□□□ 1.34
CCDC50-202ENST00000392456 HDAC1Q13547 482 aaPredicted RBP23.4■■□□□ 1.34
CCDC50-202ENST00000392456 TEX2Q8IWB9 1127 aa23.4■■□□□ 1.34
CCDC50-202ENST00000392456 PI4KAP1Q8N8J0 262 aa23.4■■□□□ 1.34
CCDC50-202ENST00000392456 VGLL3A8MV65 326 aa23.4■■□□□ 1.34
CCDC50-202ENST00000392456 MTERF4Q7Z6M4 381 aaKnown RBP23.4■■□□□ 1.34
CCDC50-202ENST00000392456 ASAP1Q9ULH1 1129 aa23.39■■□□□ 1.34
CCDC50-202ENST00000392456 MYL6BP14649 208 aa23.39■■□□□ 1.33
CCDC50-202ENST00000392456 TMOD3Q9NYL9 352 aa23.39■■□□□ 1.33
CCDC50-202ENST00000392456 THRAP3Q9Y2W1 955 aaKnown RBP23.39■■□□□ 1.33
CCDC50-202ENST00000392456 CCT4P50991 539 aaKnown RBP23.38■■□□□ 1.33
CCDC50-202ENST00000392456 DDB1Q16531 1140 aa23.38■■□□□ 1.33
CCDC50-202ENST00000392456 DHX37Q8IY37 1157 aaKnown RBP23.38■■□□□ 1.33
CCDC50-202ENST00000392456 FNBP4Q8N3X1 1017 aaPredicted RBP23.38■■□□□ 1.33
CCDC50-202ENST00000392456 DDX21Q9NR30 783 aaKnown RBP eCLIP23.38■■□□□ 1.33
CCDC50-202ENST00000392456 OFD1O75665 1012 aa23.37■■□□□ 1.33
CCDC50-202ENST00000392456 AIMP1Q12904 312 aaKnown RBP23.37■■□□□ 1.33
CCDC50-202ENST00000392456 FAM98CQ17RN3 349 aaKnown RBP23.37■■□□□ 1.33
CCDC50-202ENST00000392456 GLI3P10071 1580 aa23.37■■□□□ 1.33
CCDC50-202ENST00000392456 ADCY9O60503 1353 aa23.37■■□□□ 1.33
CCDC50-202ENST00000392456 SPATA31A6Q5VVP1 1343 aa23.37■■□□□ 1.33
CCDC50-202ENST00000392456 NWD2Q9ULI1 1742 aa23.37■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms