RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 PCDHB15Q9Y5E8 787 aa22.89■■□□□ 1.25
CCDC88C-203ENST00000389856 VPS72Q15906 364 aa22.88■■□□□ 1.25
CCDC88C-203ENST00000389856 MEX3CQ5U5Q3 659 aaKnown RBP22.87■■□□□ 1.25
CCDC88C-203ENST00000389856 FNBP4Q8N3X1 1017 aaPredicted RBP22.87■■□□□ 1.25
CCDC88C-203ENST00000389856 ZNF496Q96IT1 587 aaPredicted RBP22.87■■□□□ 1.25
CCDC88C-203ENST00000389856 DDX21Q9NR30 783 aaKnown RBP eCLIP22.87■■□□□ 1.25
CCDC88C-203ENST00000389856 TOGARAM1Q9Y4F4 1720 aa22.87■■□□□ 1.25
CCDC88C-203ENST00000389856 DDX58O95786 925 aaKnown RBP22.86■■□□□ 1.25
CCDC88C-203ENST00000389856 C5P01031 1676 aa22.86■■□□□ 1.25
CCDC88C-203ENST00000389856 ERBB4Q15303 1308 aa22.86■■□□□ 1.25
CCDC88C-203ENST00000389856 HSPA1LP34931 641 aa22.86■■□□□ 1.25
CCDC88C-203ENST00000389856 SLC4A10Q6U841 1118 aa22.86■■□□□ 1.25
CCDC88C-203ENST00000389856 IGHDP01880 384 aa22.83■■□□□ 1.25
CCDC88C-203ENST00000389856 ITGB4P16144 1822 aa22.83■■□□□ 1.25
CCDC88C-203ENST00000389856 BCL9LQ86UU0 1499 aa22.83■■□□□ 1.25
CCDC88C-203ENST00000389856 GNAI3P08754 354 aa22.82■■□□□ 1.24
CCDC88C-203ENST00000389856 TEX13AQ9BXU3 409 aaPredicted RBP22.82■■□□□ 1.24
CCDC88C-203ENST00000389856 USP21Q9UK80 565 aa22.82■■□□□ 1.24
CCDC88C-203ENST00000389856 F6X3S4 739 aa22.81■■□□□ 1.24
CCDC88C-203ENST00000389856 KCPQ6ZWJ8 1503 aa22.81■■□□□ 1.24
CCDC88C-203ENST00000389856 PHAXQ9H814 394 aaKnown RBP22.81■■□□□ 1.24
CCDC88C-203ENST00000389856 ATP10DQ9P241 1426 aa22.8■■□□□ 1.24
CCDC88C-203ENST00000389856 VSIG10Q8N0Z9 540 aa22.8■■□□□ 1.24
CCDC88C-203ENST00000389856 DNAAF4Q8WXU2 420 aa22.8■■□□□ 1.24
CCDC88C-203ENST00000389856 ZBTB47Q9UFB7 747 aaPredicted RBP22.8■■□□□ 1.24
CCDC88C-203ENST00000389856 RPAP2Q8IXW5 612 aaPredicted RBP22.79■■□□□ 1.24
CCDC88C-203ENST00000389856 SRCIN1Q9C0H9 1055 aa22.79■■□□□ 1.24
CCDC88C-203ENST00000389856 HDAC5Q9UQL6 1122 aa22.79■■□□□ 1.24
CCDC88C-203ENST00000389856 BCL9O00512 1426 aa22.79■■□□□ 1.24
CCDC88C-203ENST00000389856 FAM161AQ3B820 660 aa22.79■■□□□ 1.24
CCDC88C-203ENST00000389856 KSR2Q6VAB6 950 aa22.79■■□□□ 1.24
CCDC88C-203ENST00000389856 DOT1LQ8TEK3 1739 aa22.78■■□□□ 1.24
CCDC88C-203ENST00000389856 GCC1Q96CN9 775 aa22.78■■□□□ 1.24
CCDC88C-203ENST00000389856 GLI3P10071 1580 aa22.78■■□□□ 1.24
CCDC88C-203ENST00000389856 PRAMEF22A3QJZ6 481 aa22.77■■□□□ 1.24
CCDC88C-203ENST00000389856 PIGBQ92521 554 aa22.77■■□□□ 1.24
CCDC88C-203ENST00000389856 DDRGK1Q96HY6 314 aa22.77■■□□□ 1.24
CCDC88C-203ENST00000389856 PI4KAP2A4QPH2 592 aa22.76■■□□□ 1.23
CCDC88C-203ENST00000389856 HMMRO75330 724 aa22.76■■□□□ 1.23
CCDC88C-203ENST00000389856 GNAI2P04899 355 aa22.76■■□□□ 1.23
CCDC88C-203ENST00000389856 PI4KAP1Q8N8J0 262 aa22.76■■□□□ 1.23
CCDC88C-203ENST00000389856 ALDH1L1O75891 902 aa22.75■■□□□ 1.23
CCDC88C-203ENST00000389856 PDIA6Q15084 440 aa22.75■■□□□ 1.23
CCDC88C-203ENST00000389856 SMC5Q8IY18 1101 aa22.75■■□□□ 1.23
CCDC88C-203ENST00000389856 USP16Q9Y5T5 823 aa22.75■■□□□ 1.23
CCDC88C-203ENST00000389856 PTCD1O75127 700 aaKnown RBP22.74■■□□□ 1.23
CCDC88C-203ENST00000389856 NEXNQ0ZGT2 675 aa22.74■■□□□ 1.23
CCDC88C-203ENST00000389856 FAM98CQ17RN3 349 aaKnown RBP22.74■■□□□ 1.23
CCDC88C-203ENST00000389856 MEIS3Q99687 375 aa22.74■■□□□ 1.23
CCDC88C-203ENST00000389856 ADCY9O60503 1353 aa22.74■■□□□ 1.23
CCDC88C-203ENST00000389856 IBTKQ9P2D0 1353 aaPredicted RBP22.74■■□□□ 1.23
CCDC88C-203ENST00000389856 ANXA1P04083 346 aa22.73■■□□□ 1.23
CCDC88C-203ENST00000389856 PROSER3Q2NL68 480 aa22.73■■□□□ 1.23
CCDC88C-203ENST00000389856 ANKRD44Q8N8A2 993 aa22.73■■□□□ 1.23
CCDC88C-203ENST00000389856 SYTL4Q96C24 671 aaPredicted RBP22.73■■□□□ 1.23
CCDC88C-203ENST00000389856 C1orf115Q9H7X2 142 aa22.73■■□□□ 1.23
CCDC88C-203ENST00000389856 MAP3K2Q9Y2U5 619 aa22.73■■□□□ 1.23
CCDC88C-203ENST00000389856 STARD3NLO95772 234 aa22.72■■□□□ 1.23
CCDC88C-203ENST00000389856 MYL6BP14649 208 aa22.72■■□□□ 1.23
CCDC88C-203ENST00000389856 RIC3Q7Z5B4 369 aa22.72■■□□□ 1.23
CCDC88C-203ENST00000389856 ATG3Q9NT62 314 aa22.72■■□□□ 1.23
CCDC88C-203ENST00000389856 UBTFL1P0CB47 393 aaPredicted RBP22.71■■□□□ 1.23
CCDC88C-203ENST00000389856 BEND3Q5T5X7 828 aa22.71■■□□□ 1.23
CCDC88C-203ENST00000389856 MARCH10Q8NA82 808 aaPredicted RBP22.71■■□□□ 1.23
CCDC88C-203ENST00000389856 KAT6BQ8WYB5 2073 aa22.71■■□□□ 1.23
CCDC88C-203ENST00000389856 AFF2P51816 1311 aa22.71■■□□□ 1.23
CCDC88C-203ENST00000389856 PRIM1P49642 420 aaKnown RBP22.71■■□□□ 1.23
CCDC88C-203ENST00000389856 TRPC5Q9UL62 973 aaPredicted RBP22.71■■□□□ 1.23
CCDC88C-203ENST00000389856 THSD7AQ9UPZ6 1657 aa22.7■■□□□ 1.22
CCDC88C-203ENST00000389856 A0A0G2JS52 829 aa22.7■■□□□ 1.22
CCDC88C-203ENST00000389856 AIMP1Q12904 312 aaKnown RBP22.7■■□□□ 1.22
CCDC88C-203ENST00000389856 LINS1Q8NG48 757 aa22.7■■□□□ 1.22
CCDC88C-203ENST00000389856 XAGE3Q8WTP9 111 aa22.7■■□□□ 1.22
CCDC88C-203ENST00000389856 ASAP1Q9ULH1 1129 aa22.7■■□□□ 1.22
CCDC88C-203ENST00000389856 CEP85Q6P2H3 762 aa22.69■■□□□ 1.22
CCDC88C-203ENST00000389856 COPS6Q7L5N1 327 aa22.69■■□□□ 1.22
CCDC88C-203ENST00000389856 PDZRN3Q9UPQ7 1066 aa22.69■■□□□ 1.22
CCDC88C-203ENST00000389856 ANKRD13DQ6ZTN6 518 aa22.68■■□□□ 1.22
CCDC88C-203ENST00000389856 SMARCC1Q92922 1105 aaPredicted RBP22.68■■□□□ 1.22
CCDC88C-203ENST00000389856 RBM42Q9BTD8 480 aaKnown RBP22.68■■□□□ 1.22
CCDC88C-203ENST00000389856 ATRNO75882 1429 aa22.68■■□□□ 1.22
CCDC88C-203ENST00000389856 RGS3P49796 1198 aa22.68■■□□□ 1.22
CCDC88C-203ENST00000389856 GJD4Q96KN9 370 aaPredicted RBP22.68■■□□□ 1.22
CCDC88C-203ENST00000389856 C8orf34Q49A92 452 aa22.67■■□□□ 1.22
CCDC88C-203ENST00000389856 USP44Q9H0E7 712 aa22.67■■□□□ 1.22
CCDC88C-203ENST00000389856 PLBD2Q8NHP8 589 aa22.66■■□□□ 1.22
CCDC88C-203ENST00000389856 C9orf78Q9NZ63 289 aaPredicted RBP22.66■■□□□ 1.22
CCDC88C-203ENST00000389856 METTL22Q9BUU2 404 aaPredicted RBP22.65■■□□□ 1.22
CCDC88C-203ENST00000389856 NUCB1Q02818 461 aa22.64■■□□□ 1.22
CCDC88C-203ENST00000389856 LRP10Q7Z4F1 713 aa22.64■■□□□ 1.22
CCDC88C-203ENST00000389856 NPM2Q86SE8 214 aaKnown RBP22.64■■□□□ 1.22
CCDC88C-203ENST00000389856 SIRT2Q8IXJ6 389 aa22.64■■□□□ 1.22
CCDC88C-203ENST00000389856 DCTPP1Q9H773 170 aa22.64■■□□□ 1.22
CCDC88C-203ENST00000389856 ARFGEF2Q9Y6D5 1785 aa22.64■■□□□ 1.21
CCDC88C-203ENST00000389856 DNAJC10Q8IXB1 793 aa22.63■■□□□ 1.21
CCDC88C-203ENST00000389856 CICQ96RK0 1608 aaPredicted RBP22.62■■□□□ 1.21
CCDC88C-203ENST00000389856 NBPF26B4DH59 902 aa22.62■■□□□ 1.21
CCDC88C-203ENST00000389856 ATP8B2P98198 1209 aa22.62■■□□□ 1.21
CCDC88C-203ENST00000389856 NBPF14Q5TI25 921 aa22.62■■□□□ 1.21
CCDC88C-203ENST00000389856 NBPF10Q6P3W6 841 aaKnown RBP22.62■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms