RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 EHBP1L1Q8N3D4 1523 aa10.94□□□□□ -0.66
LIMCH1-202ENST00000381753 GNAI2P04899 355 aa10.94□□□□□ -0.66
LIMCH1-202ENST00000381753 PABPC4Q13310 644 aaKnown RBP eCLIP10.94□□□□□ -0.66
LIMCH1-202ENST00000381753 FAM47CQ5HY64 1035 aa10.94□□□□□ -0.66
LIMCH1-202ENST00000381753 HIP1O00291 1037 aa10.94□□□□□ -0.66
LIMCH1-202ENST00000381753 KDM6BO15054 1643 aa10.94□□□□□ -0.66
LIMCH1-202ENST00000381753 TTC21AQ8NDW8 1320 aa10.94□□□□□ -0.66
LIMCH1-202ENST00000381753 ERFEQ4G0M1 354 aa10.93□□□□□ -0.66
LIMCH1-202ENST00000381753 HYPKQ9NX55 129 aa10.93□□□□□ -0.66
LIMCH1-202ENST00000381753 MKRN3Q13064 507 aaKnown RBP10.93□□□□□ -0.66
LIMCH1-202ENST00000381753 DLGAP5Q15398 846 aa10.93□□□□□ -0.66
LIMCH1-202ENST00000381753 ANKRD2Q9GZV1 360 aa10.93□□□□□ -0.66
LIMCH1-202ENST00000381753 GGA1Q9UJY5 639 aa10.93□□□□□ -0.66
LIMCH1-202ENST00000381753 USP48Q86UV5 1035 aa10.93□□□□□ -0.66
LIMCH1-202ENST00000381753 RDXP35241 583 aaKnown RBP10.93□□□□□ -0.66
LIMCH1-202ENST00000381753 TNFAIP1Q13829 316 aa10.93□□□□□ -0.66
LIMCH1-202ENST00000381753 LBHD1Q9BQE6 289 aaPredicted RBP10.93□□□□□ -0.66
LIMCH1-202ENST00000381753 GADL1Q6ZQY3 521 aa10.92□□□□□ -0.66
LIMCH1-202ENST00000381753 FAM200AQ8TCP9 573 aa10.92□□□□□ -0.66
LIMCH1-202ENST00000381753 NPHP4O75161 1426 aaPredicted RBP10.92□□□□□ -0.66
LIMCH1-202ENST00000381753 ATP5J2-PTCD1G3V325 749 aa10.92□□□□□ -0.66
LIMCH1-202ENST00000381753 PPP4R3BQ5MIZ7 849 aa10.92□□□□□ -0.66
LIMCH1-202ENST00000381753 DZIP1LQ8IYY4 767 aaKnown RBP10.92□□□□□ -0.66
LIMCH1-202ENST00000381753 ERICH3Q5RHP9 1530 aa10.92□□□□□ -0.66
LIMCH1-202ENST00000381753 RANBP6O60518 1105 aaKnown RBP10.92□□□□□ -0.66
LIMCH1-202ENST00000381753 FMNL1O95466 1100 aaPredicted RBP10.92□□□□□ -0.66
LIMCH1-202ENST00000381753 UQCRHP07919 91 aa10.92□□□□□ -0.66
LIMCH1-202ENST00000381753 CCT4P50991 539 aaKnown RBP10.92□□□□□ -0.66
LIMCH1-202ENST00000381753 FOXD4L5Q5VV16 416 aaPredicted RBP10.92□□□□□ -0.66
LIMCH1-202ENST00000381753 AACSQ86V21 672 aa10.92□□□□□ -0.66
LIMCH1-202ENST00000381753 MPNDQ8N594 471 aa10.92□□□□□ -0.66
LIMCH1-202ENST00000381753 FOXD4L4Q8WXT5 416 aaPredicted RBP10.92□□□□□ -0.66
LIMCH1-202ENST00000381753 SH2D4AQ9H788 454 aa10.92□□□□□ -0.66
LIMCH1-202ENST00000381753 KDM5BQ9UGL1 1544 aa10.91□□□□□ -0.66
LIMCH1-202ENST00000381753 IPO7O95373 1038 aaKnown RBP10.91□□□□□ -0.66
LIMCH1-202ENST00000381753 MCM10Q7L590 875 aa10.91□□□□□ -0.66
LIMCH1-202ENST00000381753 BMP2KQ9NSY1 1161 aaPredicted RBP10.91□□□□□ -0.66
LIMCH1-202ENST00000381753 PIM2Q9P1W9 311 aa10.91□□□□□ -0.66
LIMCH1-202ENST00000381753 CCDC117Q8IWD4 279 aaPredicted RBP10.91□□□□□ -0.66
LIMCH1-202ENST00000381753 M0QZ92 97 aa10.91□□□□□ -0.66
LIMCH1-202ENST00000381753 ILDR1Q86SU0 546 aaPredicted RBP10.91□□□□□ -0.66
LIMCH1-202ENST00000381753 IQCA1LA6NCM1 817 aa10.91□□□□□ -0.66
LIMCH1-202ENST00000381753 HOXD10P28358 340 aa10.91□□□□□ -0.66
LIMCH1-202ENST00000381753 HSP90AB2PQ58FF8 381 aa10.9□□□□□ -0.66
LIMCH1-202ENST00000381753 TSPOAP1O95153 1857 aa10.9□□□□□ -0.66
LIMCH1-202ENST00000381753 TTC21BQ7Z4L5 1316 aa10.9□□□□□ -0.66
LIMCH1-202ENST00000381753 SYAP1Q96A49 352 aaPredicted RBP10.9□□□□□ -0.66
LIMCH1-202ENST00000381753 DDX11Q96FC9 970 aa10.9□□□□□ -0.66
LIMCH1-202ENST00000381753 TANGO6Q9C0B7 1094 aa10.9□□□□□ -0.66
LIMCH1-202ENST00000381753 TRAPPC8Q9Y2L5 1435 aa10.9□□□□□ -0.66
LIMCH1-202ENST00000381753 TRAF1Q13077 416 aa10.9□□□□□ -0.66
LIMCH1-202ENST00000381753 NBPF1Q3BBV0 1214 aa10.9□□□□□ -0.66
LIMCH1-202ENST00000381753 CRNKL1Q9BZJ0 848 aaKnown RBP10.9□□□□□ -0.66
LIMCH1-202ENST00000381753 BICRAQ9NZM4 1560 aa10.9□□□□□ -0.67
LIMCH1-202ENST00000381753 ABCC2Q92887 1545 aa10.9□□□□□ -0.67
LIMCH1-202ENST00000381753 CCDC85CA6NKD9 419 aa10.89□□□□□ -0.67
LIMCH1-202ENST00000381753 PSMA5P28066 241 aa10.89□□□□□ -0.67
LIMCH1-202ENST00000381753 NOS1P29475 1434 aa10.89□□□□□ -0.67
LIMCH1-202ENST00000381753 CCDC150Q8NCX0 1101 aa10.89□□□□□ -0.67
LIMCH1-202ENST00000381753 PAGR1Q9BTK6 254 aa10.89□□□□□ -0.67
LIMCH1-202ENST00000381753 NAPBQ9H115 298 aa10.89□□□□□ -0.67
LIMCH1-202ENST00000381753 CCDC24Q8N4L8 307 aa10.89□□□□□ -0.67
LIMCH1-202ENST00000381753 ABCC10Q5T3U5 1492 aa10.89□□□□□ -0.67
LIMCH1-202ENST00000381753 JCADQ9P266 1359 aa10.89□□□□□ -0.67
LIMCH1-202ENST00000381753 REC8O95072 547 aa10.89□□□□□ -0.67
LIMCH1-202ENST00000381753 SLC39A6Q13433 755 aa10.89□□□□□ -0.67
LIMCH1-202ENST00000381753 ZBED2Q9BTP6 218 aa10.89□□□□□ -0.67
LIMCH1-202ENST00000381753 PLCH2O75038 1416 aa10.89□□□□□ -0.67
LIMCH1-202ENST00000381753 FERMT2Q96AC1 680 aa10.89□□□□□ -0.67
LIMCH1-202ENST00000381753 SRGAP3O43295 1099 aa10.88□□□□□ -0.67
LIMCH1-202ENST00000381753 NAP1L1P55209 391 aaKnown RBP10.88□□□□□ -0.67
LIMCH1-202ENST00000381753 IQSEC3Q9UPP2 1182 aaPredicted RBP10.88□□□□□ -0.67
LIMCH1-202ENST00000381753 PDE4BQ07343 736 aa10.88□□□□□ -0.67
LIMCH1-202ENST00000381753 ZFYVE16Q7Z3T8 1539 aa10.88□□□□□ -0.67
LIMCH1-202ENST00000381753 SSFA2P28290 1259 aa10.88□□□□□ -0.67
LIMCH1-202ENST00000381753 DCAF15Q66K64 600 aa10.88□□□□□ -0.67
LIMCH1-202ENST00000381753 DBF4Q9UBU7 674 aaPredicted RBP10.88□□□□□ -0.67
LIMCH1-202ENST00000381753 CTNNA3Q9UI47 895 aa10.88□□□□□ -0.67
LIMCH1-202ENST00000381753 VAT1LQ9HCJ6 419 aa10.87□□□□□ -0.67
LIMCH1-202ENST00000381753 EMILIN1Q9Y6C2 1016 aa10.87□□□□□ -0.67
LIMCH1-202ENST00000381753 CSPG5O95196 566 aa10.87□□□□□ -0.67
LIMCH1-202ENST00000381753 MVPQ14764 893 aaKnown RBP10.87□□□□□ -0.67
LIMCH1-202ENST00000381753 RTN4Q9NQC3 1192 aaKnown RBP10.87□□□□□ -0.67
LIMCH1-202ENST00000381753 MAST3O60307 1309 aa10.87□□□□□ -0.67
LIMCH1-202ENST00000381753 AS3MTQ9HBK9 375 aa10.87□□□□□ -0.67
LIMCH1-202ENST00000381753 PLCG2P16885 1265 aa10.87□□□□□ -0.67
LIMCH1-202ENST00000381753 IQCA1Q86XH1 822 aa10.87□□□□□ -0.67
LIMCH1-202ENST00000381753 SLC10A4Q96EP9 437 aa10.87□□□□□ -0.67
LIMCH1-202ENST00000381753 NOL7Q9UMY1 257 aaKnown RBP10.87□□□□□ -0.67
LIMCH1-202ENST00000381753 CUL7Q14999 1698 aa10.87□□□□□ -0.67
LIMCH1-202ENST00000381753 DCAF5Q96JK2 942 aa10.87□□□□□ -0.67
LIMCH1-202ENST00000381753 DHX37Q8IY37 1157 aaKnown RBP10.86□□□□□ -0.67
LIMCH1-202ENST00000381753 TNPO1Q92973 898 aaKnown RBP10.86□□□□□ -0.67
LIMCH1-202ENST00000381753 ATP6V1DQ9Y5K8 247 aa10.86□□□□□ -0.67
LIMCH1-202ENST00000381753 TSPYL2Q9H2G4 693 aaPredicted RBP10.86□□□□□ -0.67
LIMCH1-202ENST00000381753 TSPY2A6NKD2 308 aa10.85□□□□□ -0.67
LIMCH1-202ENST00000381753 ECE1P42892 770 aa10.85□□□□□ -0.67
LIMCH1-202ENST00000381753 RAB3GAP1Q15042 981 aa10.85□□□□□ -0.67
LIMCH1-202ENST00000381753 DUSP27Q5VZP5 1158 aa10.85□□□□□ -0.67
LIMCH1-202ENST00000381753 NFATC2IPQ8NCF5 419 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms