RNA–Protein interactions for RNA: ENST00000374426.6

CXCL12-202, Transcript of C-X-C motif chemokine ligand 12, humanhuman

TSL 1 (best) BASIC

Gene CXCL12, Length 470 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-202ENST00000374426 ZBTB1Q9Y2K1 713 aa18.7■□□□□ 0.58
CXCL12-202ENST00000374426 COL15A1P39059 1388 aa18.69■□□□□ 0.58
CXCL12-202ENST00000374426 CC2D1BQ5T0F9 858 aaKnown RBP18.69■□□□□ 0.58
CXCL12-202ENST00000374426 NARFQ9UHQ1 456 aa18.69■□□□□ 0.58
CXCL12-202ENST00000374426 VIRMAQ69YN4 1812 aaKnown RBP18.68■□□□□ 0.58
CXCL12-202ENST00000374426 APLP1P51693 650 aa18.68■□□□□ 0.58
CXCL12-202ENST00000374426 NFIXQ14938 502 aa18.68■□□□□ 0.58
CXCL12-202ENST00000374426 VSIG10Q8N0Z9 540 aa18.68■□□□□ 0.58
CXCL12-202ENST00000374426 BCL2L12Q9HB09 334 aa18.68■□□□□ 0.58
CXCL12-202ENST00000374426 RNF181Q9P0P0 153 aa18.66■□□□□ 0.58
CXCL12-202ENST00000374426 COL3A1P02461 1466 aaPredicted RBP18.65■□□□□ 0.58
CXCL12-202ENST00000374426 NRXN2Q9P2S2 1712 aa18.65■□□□□ 0.58
CXCL12-202ENST00000374426 UBR2Q8IWV8 1755 aa18.65■□□□□ 0.58
CXCL12-202ENST00000374426 AFDNP55196 1824 aaKnown RBP18.65■□□□□ 0.58
CXCL12-202ENST00000374426 CANXP27824 592 aaKnown RBP18.64■□□□□ 0.57
CXCL12-202ENST00000374426 DNAJC5GQ8N7S2 189 aa18.64■□□□□ 0.57
CXCL12-202ENST00000374426 RBM46Q8TBY0 533 aaKnown RBP18.64■□□□□ 0.57
CXCL12-202ENST00000374426 SERPINB2P05120 415 aa18.63■□□□□ 0.57
CXCL12-202ENST00000374426 NPC1L1Q9UHC9 1359 aa18.63■□□□□ 0.57
CXCL12-202ENST00000374426 SBF1O95248 1867 aa18.63■□□□□ 0.57
CXCL12-202ENST00000374426 EIF5P55010 431 aaKnown RBP18.62■□□□□ 0.57
CXCL12-202ENST00000374426 RASSF7Q02833 373 aa18.62■□□□□ 0.57
CXCL12-202ENST00000374426 TTC5Q8N0Z6 440 aa18.62■□□□□ 0.57
CXCL12-202ENST00000374426 IL17REQ8NFR9 667 aa18.62■□□□□ 0.57
CXCL12-202ENST00000374426 KDM2BQ8NHM5 1336 aa18.62■□□□□ 0.57
CXCL12-202ENST00000374426 PCNTO95613 3336 aa18.61■□□□□ 0.57
CXCL12-202ENST00000374426 CARMIL3Q8ND23 1372 aa18.61■□□□□ 0.57
CXCL12-202ENST00000374426 U2SURPO15042 1029 aaKnown RBP18.61■□□□□ 0.57
CXCL12-202ENST00000374426 STARD3NLO95772 234 aa18.61■□□□□ 0.57
CXCL12-202ENST00000374426 C16orf71Q8IYS4 520 aaPredicted RBP18.61■□□□□ 0.57
CXCL12-202ENST00000374426 ZNF496Q96IT1 587 aaPredicted RBP18.61■□□□□ 0.57
CXCL12-202ENST00000374426 CNGB1Q14028 1251 aaPredicted RBP18.6■□□□□ 0.57
CXCL12-202ENST00000374426 ZNF790Q6PG37 636 aa18.6■□□□□ 0.57
CXCL12-202ENST00000374426 RRAGCQ9HB90 399 aa18.6■□□□□ 0.57
CXCL12-202ENST00000374426 GNAT3A8MTJ3 354 aa18.59■□□□□ 0.57
CXCL12-202ENST00000374426 PRELPP51888 382 aa18.59■□□□□ 0.57
CXCL12-202ENST00000374426 TEFQ10587 303 aa18.59■□□□□ 0.57
CXCL12-202ENST00000374426 BICDL1Q6ZP65 573 aa18.59■□□□□ 0.57
CXCL12-202ENST00000374426 TTLL6Q8N841 843 aa18.59■□□□□ 0.57
CXCL12-202ENST00000374426 GAS2L2Q8NHY3 880 aa18.59■□□□□ 0.57
CXCL12-202ENST00000374426 DLEC1Q9Y238 1755 aa18.59■□□□□ 0.57
CXCL12-202ENST00000374426 HEG1Q9ULI3 1381 aa18.58■□□□□ 0.57
CXCL12-202ENST00000374426 FSTL1Q12841 308 aa18.58■□□□□ 0.56
CXCL12-202ENST00000374426 C2CD5Q86YS7 1000 aa18.58■□□□□ 0.56
CXCL12-202ENST00000374426 ZC3H4Q9UPT8 1303 aaKnown RBP18.57■□□□□ 0.56
CXCL12-202ENST00000374426 A0A087WZG4 1122 aa18.57■□□□□ 0.56
CXCL12-202ENST00000374426 LMNB1P20700 586 aa18.57■□□□□ 0.56
CXCL12-202ENST00000374426 HTRA3P83110 453 aa18.57■□□□□ 0.56
CXCL12-202ENST00000374426 TBC1D9BQ66K14 1250 aa18.57■□□□□ 0.56
CXCL12-202ENST00000374426 WDR90Q96KV7 1748 aa18.57■□□□□ 0.56
CXCL12-202ENST00000374426 TNRC6CQ9HCJ0 1690 aaKnown RBP18.57■□□□□ 0.56
CXCL12-202ENST00000374426 SIPA1L3O60292 1781 aaPredicted RBP18.56■□□□□ 0.56
CXCL12-202ENST00000374426 H0YIN7 160 aa18.56■□□□□ 0.56
CXCL12-202ENST00000374426 TEX13AQ9BXU3 409 aaPredicted RBP18.56■□□□□ 0.56
CXCL12-202ENST00000374426 CEMIPQ8WUJ3 1361 aa18.55■□□□□ 0.56
CXCL12-202ENST00000374426 NFKBIEO00221 500 aa18.55■□□□□ 0.56
CXCL12-202ENST00000374426 PHACTR3Q96KR7 559 aa18.55■□□□□ 0.56
CXCL12-202ENST00000374426 TBC1D2BQ9UPU7 963 aa18.55■□□□□ 0.56
CXCL12-202ENST00000374426 ZNF330Q9Y3S2 320 aaPredicted RBP18.55■□□□□ 0.56
CXCL12-202ENST00000374426 SCN7AQ01118 1682 aa18.54■□□□□ 0.56
CXCL12-202ENST00000374426 IL6STP40189 918 aaPredicted RBP18.54■□□□□ 0.56
CXCL12-202ENST00000374426 FMNL2Q96PY5 1086 aa18.54■□□□□ 0.56
CXCL12-202ENST00000374426 GLTPD2A6NH11 291 aa18.53■□□□□ 0.56
CXCL12-202ENST00000374426 KCNQ3O43525 872 aa18.53■□□□□ 0.56
CXCL12-202ENST00000374426 A1BGP04217 495 aa18.53■□□□□ 0.56
CXCL12-202ENST00000374426 PRR5LQ6MZQ0 368 aa18.53■□□□□ 0.56
CXCL12-202ENST00000374426 CCDC24Q8N4L8 307 aa18.53■□□□□ 0.56
CXCL12-202ENST00000374426 ANKRD31Q8N7Z5 1873 aa18.53■□□□□ 0.56
CXCL12-202ENST00000374426 BRIP1Q9BX63 1249 aa18.53■□□□□ 0.56
CXCL12-202ENST00000374426 RSPH6AQ9H0K4 717 aa18.53■□□□□ 0.56
CXCL12-202ENST00000374426 PRKAR2BP31323 418 aa18.52■□□□□ 0.56
CXCL12-202ENST00000374426 KLRG1Q96E93 195 aa18.52■□□□□ 0.56
CXCL12-202ENST00000374426 BTBD11A6QL63 1104 aa18.51■□□□□ 0.55
CXCL12-202ENST00000374426 CAMTA2O94983 1202 aa18.51■□□□□ 0.55
CXCL12-202ENST00000374426 PDE6BP35913 854 aa18.51■□□□□ 0.55
CXCL12-202ENST00000374426 SMC1BQ8NDV3 1235 aa18.51■□□□□ 0.55
CXCL12-202ENST00000374426 ZNF622Q969S3 477 aaKnown RBP eCLIP18.51■□□□□ 0.55
CXCL12-202ENST00000374426 VEGFAP15692 232 aaPredicted RBP18.5■□□□□ 0.55
CXCL12-202ENST00000374426 PDZRN3Q9UPQ7 1066 aa18.5■□□□□ 0.55
CXCL12-202ENST00000374426 COL11A2P13942 1736 aaPredicted RBP18.49■□□□□ 0.55
CXCL12-202ENST00000374426 TIAM2Q8IVF5 1701 aa18.49■□□□□ 0.55
CXCL12-202ENST00000374426 C21orf2O43822 256 aa18.49■□□□□ 0.55
CXCL12-202ENST00000374426 JMYQ8N9B5 988 aa18.49■□□□□ 0.55
CXCL12-202ENST00000374426 CFAP53Q96M91 514 aa18.49■□□□□ 0.55
CXCL12-202ENST00000374426 USP16Q9Y5T5 823 aa18.49■□□□□ 0.55
CXCL12-202ENST00000374426 CCDC88AQ3V6T2 1871 aa18.48■□□□□ 0.55
CXCL12-202ENST00000374426 CNBD1Q8NA66 436 aa18.48■□□□□ 0.55
CXCL12-202ENST00000374426 SETDB2Q96T68 719 aa18.48■□□□□ 0.55
CXCL12-202ENST00000374426 ZNF219Q9P2Y4 722 aaPredicted RBP18.48■□□□□ 0.55
CXCL12-202ENST00000374426 PRAMEF22A3QJZ6 481 aa18.47■□□□□ 0.55
CXCL12-202ENST00000374426 POTECB2RU33 542 aa18.47■□□□□ 0.55
CXCL12-202ENST00000374426 PIP4K2AP48426 406 aaPredicted RBP18.47■□□□□ 0.55
CXCL12-202ENST00000374426 NPM2Q86SE8 214 aaKnown RBP18.47■□□□□ 0.55
CXCL12-202ENST00000374426 DZIP3Q86Y13 1208 aaKnown RBP18.47■□□□□ 0.55
CXCL12-202ENST00000374426 NUDCQ9Y266 331 aa18.46■□□□□ 0.55
CXCL12-202ENST00000374426 FER1L6Q2WGJ9 1857 aa18.46■□□□□ 0.54
CXCL12-202ENST00000374426 BCORQ6W2J9 1755 aa18.45■□□□□ 0.54
CXCL12-202ENST00000374426 U2AF1L5P0DN76 240 aaPredicted RBP18.45■□□□□ 0.54
CXCL12-202ENST00000374426 SRGNP10124 158 aa18.45■□□□□ 0.54
CXCL12-202ENST00000374426 U2AF1Q01081 240 aaKnown RBP eCLIP18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms