RNA–Protein interactions for RNA: ENST00000371820.3

COL5A1-202, Transcript of collagen type V alpha 1 chain, humanhuman

TSL 2

Gene COL5A1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-202ENST00000371820 TEFQ10587 303 aa13.61□□□□□ -0.23
COL5A1-202ENST00000371820 LGR6Q9HBX8 967 aa13.61□□□□□ -0.23
COL5A1-202ENST00000371820 CRKLP46109 303 aaKnown RBP13.6□□□□□ -0.23
COL5A1-202ENST00000371820 RALBP1Q15311 655 aa13.6□□□□□ -0.23
COL5A1-202ENST00000371820 TTC5Q8N0Z6 440 aa13.6□□□□□ -0.23
COL5A1-202ENST00000371820 MRS2Q9HD23 443 aa13.6□□□□□ -0.23
COL5A1-202ENST00000371820 CCDC87Q9NVE4 849 aa13.6□□□□□ -0.23
COL5A1-202ENST00000371820 ZNF526Q8TF50 670 aaPredicted RBP13.59□□□□□ -0.23
COL5A1-202ENST00000371820 PNNQ9H307 717 aaKnown RBP13.59□□□□□ -0.23
COL5A1-202ENST00000371820 USP42Q9H9J4 1324 aaKnown RBP13.59□□□□□ -0.23
COL5A1-202ENST00000371820 A0A0G2JLW4 131 aa13.58□□□□□ -0.24
COL5A1-202ENST00000371820 VSIG10Q8N0Z9 540 aa13.58□□□□□ -0.24
COL5A1-202ENST00000371820 RTF1Q92541 710 aaKnown RBP13.58□□□□□ -0.24
COL5A1-202ENST00000371820 PARP3Q9Y6F1 533 aa13.58□□□□□ -0.24
COL5A1-202ENST00000371820 KCPQ6ZWJ8 1503 aa13.58□□□□□ -0.24
COL5A1-202ENST00000371820 DPEP1P16444 411 aa13.57□□□□□ -0.24
COL5A1-202ENST00000371820 SRP68Q9UHB9 627 aaKnown RBP13.57□□□□□ -0.24
COL5A1-202ENST00000371820 BCS1LQ9Y276 419 aa13.57□□□□□ -0.24
COL5A1-202ENST00000371820 UBR2Q8IWV8 1755 aa13.57□□□□□ -0.24
COL5A1-202ENST00000371820 ARFGEF1Q9Y6D6 1849 aa13.57□□□□□ -0.24
COL5A1-202ENST00000371820 CEP350Q5VT06 3117 aa13.57□□□□□ -0.24
COL5A1-202ENST00000371820 HTATSF1O43719 755 aaKnown RBP13.56□□□□□ -0.24
COL5A1-202ENST00000371820 DDR1Q08345 913 aa13.56□□□□□ -0.24
COL5A1-202ENST00000371820 SLC39A6Q13433 755 aa13.56□□□□□ -0.24
COL5A1-202ENST00000371820 INTS5Q6P9B9 1019 aaKnown RBP13.56□□□□□ -0.24
COL5A1-202ENST00000371820 CEMIPQ8WUJ3 1361 aa13.56□□□□□ -0.24
COL5A1-202ENST00000371820 SIPA1L3O60292 1781 aaPredicted RBP13.55□□□□□ -0.24
COL5A1-202ENST00000371820 KIF3CO14782 793 aa13.55□□□□□ -0.24
COL5A1-202ENST00000371820 KCNA3P22001 575 aa13.55□□□□□ -0.24
COL5A1-202ENST00000371820 DNAJC10Q8IXB1 793 aa13.55□□□□□ -0.24
COL5A1-202ENST00000371820 IL17REQ8NFR9 667 aa13.55□□□□□ -0.24
COL5A1-202ENST00000371820 PHACTR3Q96KR7 559 aa13.55□□□□□ -0.24
COL5A1-202ENST00000371820 ANP32EQ9BTT0 268 aa13.55□□□□□ -0.24
COL5A1-202ENST00000371820 TEX13AQ9BXU3 409 aaPredicted RBP13.55□□□□□ -0.24
COL5A1-202ENST00000371820 SOS1Q07889 1333 aaPredicted RBP13.55□□□□□ -0.24
COL5A1-202ENST00000371820 STARD3NLO95772 234 aa13.54□□□□□ -0.24
COL5A1-202ENST00000371820 ZNF790Q6PG37 636 aa13.54□□□□□ -0.24
COL5A1-202ENST00000371820 CYP19A1P11511 503 aaPredicted RBP13.53□□□□□ -0.24
COL5A1-202ENST00000371820 HSPA6P17066 643 aa13.53□□□□□ -0.24
COL5A1-202ENST00000371820 FMNL2Q96PY5 1086 aa13.53□□□□□ -0.24
COL5A1-202ENST00000371820 MYBBP1AQ9BQG0 1328 aaKnown RBP13.53□□□□□ -0.24
COL5A1-202ENST00000371820 MAPK8IP3Q9UPT6 1336 aa13.53□□□□□ -0.24
COL5A1-202ENST00000371820 COL15A1P39059 1388 aa13.53□□□□□ -0.24
COL5A1-202ENST00000371820 HEG1Q9ULI3 1381 aa13.53□□□□□ -0.24
COL5A1-202ENST00000371820 BTBD11A6QL63 1104 aa13.52□□□□□ -0.25
COL5A1-202ENST00000371820 POLRMTO00411 1230 aaKnown RBP13.52□□□□□ -0.25
COL5A1-202ENST00000371820 TM4SF1P30408 202 aa13.52□□□□□ -0.25
COL5A1-202ENST00000371820 ARHGAP27Q6ZUM4 889 aa13.52□□□□□ -0.25
COL5A1-202ENST00000371820 FAM9BQ8IZU0 186 aa13.52□□□□□ -0.25
COL5A1-202ENST00000371820 PIM2Q9P1W9 311 aa13.52□□□□□ -0.25
COL5A1-202ENST00000371820 RBM19Q9Y4C8 960 aaKnown RBP13.52□□□□□ -0.25
COL5A1-202ENST00000371820 NRXN2Q9P2S2 1712 aa13.52□□□□□ -0.25
COL5A1-202ENST00000371820 ZPR1O75312 459 aa13.51□□□□□ -0.25
COL5A1-202ENST00000371820 USPL1Q5W0Q7 1092 aa13.51□□□□□ -0.25
COL5A1-202ENST00000371820 NPM2Q86SE8 214 aaKnown RBP13.51□□□□□ -0.25
COL5A1-202ENST00000371820 ZBTB1Q9Y2K1 713 aa13.51□□□□□ -0.25
COL5A1-202ENST00000371820 AFDNP55196 1824 aaKnown RBP13.5□□□□□ -0.25
COL5A1-202ENST00000371820 FANCIQ9NVI1 1328 aa13.5□□□□□ -0.25
COL5A1-202ENST00000371820 A0A087WZG4 1122 aa13.5□□□□□ -0.25
COL5A1-202ENST00000371820 ZNF496Q96IT1 587 aaPredicted RBP13.5□□□□□ -0.25
COL5A1-202ENST00000371820 NARFQ9UHQ1 456 aa13.5□□□□□ -0.25
COL5A1-202ENST00000371820 DLEC1Q9Y238 1755 aa13.5□□□□□ -0.25
COL5A1-202ENST00000371820 CHRNA5P30532 468 aa13.49□□□□□ -0.25
COL5A1-202ENST00000371820 DALRD3Q5D0E6 543 aaKnown RBP13.49□□□□□ -0.25
COL5A1-202ENST00000371820 PNISRQ8TF01 805 aaKnown RBP13.49□□□□□ -0.25
COL5A1-202ENST00000371820 SCN7AQ01118 1682 aa13.48□□□□□ -0.25
COL5A1-202ENST00000371820 NFIXQ14938 502 aa13.48□□□□□ -0.25
COL5A1-202ENST00000371820 NFE2L2Q16236 605 aa13.48□□□□□ -0.25
COL5A1-202ENST00000371820 C9orf131Q5VYM1 1079 aa13.48□□□□□ -0.25
COL5A1-202ENST00000371820 MCM10Q7L590 875 aa13.48□□□□□ -0.25
COL5A1-202ENST00000371820 PLEKHF1Q96S99 279 aa13.48□□□□□ -0.25
COL5A1-202ENST00000371820 DLG5Q8TDM6 1919 aa13.47□□□□□ -0.25
COL5A1-202ENST00000371820 TOMM70O94826 608 aa13.47□□□□□ -0.25
COL5A1-202ENST00000371820 CANXP27824 592 aaKnown RBP13.47□□□□□ -0.25
COL5A1-202ENST00000371820 LMOD3Q0VAK6 560 aa13.47□□□□□ -0.25
COL5A1-202ENST00000371820 WDR43Q15061 677 aaKnown RBP eCLIP13.47□□□□□ -0.25
COL5A1-202ENST00000371820 TAF7Q15545 349 aaPredicted RBP13.47□□□□□ -0.25
COL5A1-202ENST00000371820 BCL2L12Q9HB09 334 aa13.47□□□□□ -0.25
COL5A1-202ENST00000371820 NMRK2Q9NPI5 230 aa13.47□□□□□ -0.25
COL5A1-202ENST00000371820 SNRPA1P09661 255 aaKnown RBP13.46□□□□□ -0.25
COL5A1-202ENST00000371820 IL6STP40189 918 aaPredicted RBP13.46□□□□□ -0.25
COL5A1-202ENST00000371820 DCTN1Q14203 1278 aa13.46□□□□□ -0.25
COL5A1-202ENST00000371820 SBF1O95248 1867 aa13.46□□□□□ -0.26
COL5A1-202ENST00000371820 TNRC6CQ9HCJ0 1690 aaKnown RBP13.45□□□□□ -0.26
COL5A1-202ENST00000371820 EIF5P55010 431 aaKnown RBP13.45□□□□□ -0.26
COL5A1-202ENST00000371820 RNF181Q9P0P0 153 aa13.45□□□□□ -0.26
COL5A1-202ENST00000371820 CARMIL3Q8ND23 1372 aa13.45□□□□□ -0.26
COL5A1-202ENST00000371820 SERPINB2P05120 415 aa13.44□□□□□ -0.26
COL5A1-202ENST00000371820 LAMB4A4D0S4 1761 aa13.43□□□□□ -0.26
COL5A1-202ENST00000371820 KDM3BQ7LBC6 1761 aa13.43□□□□□ -0.26
COL5A1-202ENST00000371820 KCNQ3O43525 872 aa13.43□□□□□ -0.26
COL5A1-202ENST00000371820 APLP1P51693 650 aa13.43□□□□□ -0.26
COL5A1-202ENST00000371820 ANKRD31Q8N7Z5 1873 aa13.43□□□□□ -0.26
COL5A1-202ENST00000371820 ZNF330Q9Y3S2 320 aaPredicted RBP13.43□□□□□ -0.26
COL5A1-202ENST00000371820 RNF123Q5XPI4 1314 aa13.42□□□□□ -0.26
COL5A1-202ENST00000371820 KDM2BQ8NHM5 1336 aa13.42□□□□□ -0.26
COL5A1-202ENST00000371820 WDR90Q96KV7 1748 aa13.42□□□□□ -0.26
COL5A1-202ENST00000371820 RASSF7Q02833 373 aa13.42□□□□□ -0.26
COL5A1-202ENST00000371820 RBM46Q8TBY0 533 aaKnown RBP13.42□□□□□ -0.26
COL5A1-202ENST00000371820 BCORQ6W2J9 1755 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms