RNA–Protein interactions for RNA: ENST00000371817.7

COL5A1-201, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL5A1, Length 8,471 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-201ENST00000371817 MAP2K2P36507 400 aa17.59■□□□□ 0.41
COL5A1-201ENST00000371817 NOB1Q9ULX3 412 aaKnown RBP17.59■□□□□ 0.41
COL5A1-201ENST00000371817 ZEB2O60315 1214 aa17.59■□□□□ 0.41
COL5A1-201ENST00000371817 SLU7O95391 586 aaKnown RBP17.59■□□□□ 0.41
COL5A1-201ENST00000371817 MAP3K9P80192 1104 aa17.59■□□□□ 0.41
COL5A1-201ENST00000371817 PRPF4BQ13523 1007 aaKnown RBP17.59■□□□□ 0.41
COL5A1-201ENST00000371817 IFI16Q16666 785 aaKnown RBP17.59■□□□□ 0.41
COL5A1-201ENST00000371817 CKAP2LQ8IYA6 745 aa17.59■□□□□ 0.41
COL5A1-201ENST00000371817 BANK1Q8NDB2 785 aa17.59■□□□□ 0.41
COL5A1-201ENST00000371817 RFC1P35251 1148 aaPredicted RBP17.59■□□□□ 0.41
COL5A1-201ENST00000371817 CACNA2D3Q8IZS8 1091 aa17.59■□□□□ 0.41
COL5A1-201ENST00000371817 STMN2Q93045 179 aa17.59■□□□□ 0.41
COL5A1-201ENST00000371817 POTEDQ86YR6 584 aa17.59■□□□□ 0.41
COL5A1-201ENST00000371817 IQCGQ9H095 443 aaKnown RBP17.59■□□□□ 0.41
COL5A1-201ENST00000371817 TSNARE1Q96NA8 513 aa17.59■□□□□ 0.41
COL5A1-201ENST00000371817 MYCBPQ99417 103 aaPredicted RBP17.59■□□□□ 0.41
COL5A1-201ENST00000371817 RPUSD2Q8IZ73 545 aaKnown RBP17.58■□□□□ 0.41
COL5A1-201ENST00000371817 NBPF8Q3BBV2 869 aa17.58■□□□□ 0.4
COL5A1-201ENST00000371817 IFT74Q96LB3 600 aa17.58■□□□□ 0.4
COL5A1-201ENST00000371817 KIAA0753Q2KHM9 967 aa17.58■□□□□ 0.4
COL5A1-201ENST00000371817 CTAGE15A4D2H0 777 aa17.58■□□□□ 0.4
COL5A1-201ENST00000371817 CTAGE8P0CG41 777 aa17.58■□□□□ 0.4
COL5A1-201ENST00000371817 ZSCAN23Q3MJ62 389 aa17.58■□□□□ 0.4
COL5A1-201ENST00000371817 HS1BP3Q53T59 392 aa17.58■□□□□ 0.4
COL5A1-201ENST00000371817 APBB1IPQ7Z5R6 666 aaPredicted RBP17.58■□□□□ 0.4
COL5A1-201ENST00000371817 CTAGE6Q86UF2 777 aa17.58■□□□□ 0.4
COL5A1-201ENST00000371817 CTAGE4Q8IX94 777 aa17.58■□□□□ 0.4
COL5A1-201ENST00000371817 PPFIBP2Q8ND30 876 aa17.58■□□□□ 0.4
COL5A1-201ENST00000371817 ZNF165P49910 485 aa17.57■□□□□ 0.4
COL5A1-201ENST00000371817 CCDC129Q6ZRS4 1044 aa17.57■□□□□ 0.4
COL5A1-201ENST00000371817 GBP1P32455 592 aa17.57■□□□□ 0.4
COL5A1-201ENST00000371817 CDCA7LQ96GN5 454 aa17.57■□□□□ 0.4
COL5A1-201ENST00000371817 RRBP1Q9P2E9 1410 aaKnown RBP17.57■□□□□ 0.4
COL5A1-201ENST00000371817 UBE2HP62256 183 aa17.57■□□□□ 0.4
COL5A1-201ENST00000371817 RAB3IL1Q8TBN0 382 aa17.57■□□□□ 0.4
COL5A1-201ENST00000371817 VCX3BQ9H321 246 aa17.57■□□□□ 0.4
COL5A1-201ENST00000371817 FAM76AQ8TAV0 307 aa17.57■□□□□ 0.4
COL5A1-201ENST00000371817 SAMD15Q9P1V8 674 aa17.57■□□□□ 0.4
COL5A1-201ENST00000371817 DNAI2Q9GZS0 605 aa17.56■□□□□ 0.4
COL5A1-201ENST00000371817 AIMP1Q12904 312 aaKnown RBP17.56■□□□□ 0.4
COL5A1-201ENST00000371817 KLHL40Q2TBA0 621 aa17.56■□□□□ 0.4
COL5A1-201ENST00000371817 TTC39AQ5SRH9 613 aa17.56■□□□□ 0.4
COL5A1-201ENST00000371817 CCDC174Q6PII3 467 aa17.56■□□□□ 0.4
COL5A1-201ENST00000371817 FAM114A2Q9NRY5 505 aa17.56■□□□□ 0.4
COL5A1-201ENST00000371817 NOP2P46087 812 aaKnown RBP17.56■□□□□ 0.4
COL5A1-201ENST00000371817 MVPQ14764 893 aaKnown RBP17.56■□□□□ 0.4
COL5A1-201ENST00000371817 ZKSCAN5Q9Y2L8 839 aa17.56■□□□□ 0.4
COL5A1-201ENST00000371817 CWC27Q6UX04 472 aaKnown RBP17.56■□□□□ 0.4
COL5A1-201ENST00000371817 SH2B1Q9NRF2 756 aaPredicted RBP17.56■□□□□ 0.4
COL5A1-201ENST00000371817 MKRN1Q9UHC7 482 aaKnown RBP17.56■□□□□ 0.4
COL5A1-201ENST00000371817 ABCC8Q09428 1581 aa17.56■□□□□ 0.4
COL5A1-201ENST00000371817 WHAMMP3Q1A5X7 153 aa17.56■□□□□ 0.4
COL5A1-201ENST00000371817 LRSAM1Q6UWE0 723 aa17.55■□□□□ 0.4
COL5A1-201ENST00000371817 TUBBP07437 444 aa17.55■□□□□ 0.4
COL5A1-201ENST00000371817 HDXQ7Z353 690 aa17.55■□□□□ 0.4
COL5A1-201ENST00000371817 CCDC110Q8TBZ0 833 aa17.55■□□□□ 0.4
COL5A1-201ENST00000371817 CTNNA3Q9UI47 895 aa17.55■□□□□ 0.4
COL5A1-201ENST00000371817 CCT4P50991 539 aaKnown RBP17.55■□□□□ 0.4
COL5A1-201ENST00000371817 CCDC96Q2M329 555 aa17.55■□□□□ 0.4
COL5A1-201ENST00000371817 CPLX3Q8WVH0 158 aa17.55■□□□□ 0.4
COL5A1-201ENST00000371817 RASAL2Q9UJF2 1139 aa17.55■□□□□ 0.4
COL5A1-201ENST00000371817 ADAMTS8Q9UP79 889 aa17.55■□□□□ 0.4
COL5A1-201ENST00000371817 EID1Q9Y6B2 187 aa17.55■□□□□ 0.4
COL5A1-201ENST00000371817 MAP7D1Q3KQU3 841 aa17.55■□□□□ 0.4
COL5A1-201ENST00000371817 CNNM3Q8NE01 707 aa17.55■□□□□ 0.4
COL5A1-201ENST00000371817 CUX2O14529 1486 aa17.55■□□□□ 0.4
COL5A1-201ENST00000371817 PLVAPQ9BX97 442 aa17.55■□□□□ 0.4
COL5A1-201ENST00000371817 HMOX1P09601 288 aa17.54■□□□□ 0.4
COL5A1-201ENST00000371817 SELENOOQ9BVL4 669 aa17.54■□□□□ 0.4
COL5A1-201ENST00000371817 ZBTB17Q13105 803 aa17.54■□□□□ 0.4
COL5A1-201ENST00000371817 VCXQ9H320 206 aa17.54■□□□□ 0.4
COL5A1-201ENST00000371817 MIA2Q96PC5 1412 aa17.54■□□□□ 0.4
COL5A1-201ENST00000371817 PDE1CQ14123 709 aaPredicted RBP17.54■□□□□ 0.4
COL5A1-201ENST00000371817 SETDB1Q15047 1291 aa17.54■□□□□ 0.4
COL5A1-201ENST00000371817 AP1ARQ63HQ0 302 aa17.54■□□□□ 0.4
COL5A1-201ENST00000371817 CEP128Q6ZU80 1094 aa17.54■□□□□ 0.4
COL5A1-201ENST00000371817 NUTM2FA1L443 756 aa17.54■□□□□ 0.4
COL5A1-201ENST00000371817 RABGAP1Q9Y3P9 1069 aa17.54■□□□□ 0.4
COL5A1-201ENST00000371817 PSMC4P43686 418 aa17.54■□□□□ 0.4
COL5A1-201ENST00000371817 TSNAXIP1Q2TAA8 658 aa17.54■□□□□ 0.4
COL5A1-201ENST00000371817 CTCFLQ8NI51 663 aaPredicted RBP17.54■□□□□ 0.4
COL5A1-201ENST00000371817 IGSF3O75054 1194 aa17.54■□□□□ 0.4
COL5A1-201ENST00000371817 TPD52P55327 224 aaPredicted RBP17.54■□□□□ 0.4
COL5A1-201ENST00000371817 SH3BGRP55822 239 aaPredicted RBP17.54■□□□□ 0.4
COL5A1-201ENST00000371817 PPP1R12CQ9BZL4 782 aa17.54■□□□□ 0.4
COL5A1-201ENST00000371817 C11orf95C9JLR9 678 aaPredicted RBP17.53■□□□□ 0.4
COL5A1-201ENST00000371817 DNAI1Q9UI46 699 aa17.53■□□□□ 0.4
COL5A1-201ENST00000371817 VGFO15240 615 aaPredicted RBP17.53■□□□□ 0.4
COL5A1-201ENST00000371817 MAP4K4O95819 1239 aaPredicted RBP17.53■□□□□ 0.4
COL5A1-201ENST00000371817 SKILP12757 684 aa17.53■□□□□ 0.4
COL5A1-201ENST00000371817 ZSCAN25Q6NSZ9 544 aa17.53■□□□□ 0.4
COL5A1-201ENST00000371817 ARFGAP2Q8N6H7 521 aa17.53■□□□□ 0.4
COL5A1-201ENST00000371817 PHAXQ9H814 394 aaKnown RBP17.53■□□□□ 0.4
COL5A1-201ENST00000371817 A6NNZ2 444 aa17.53■□□□□ 0.4
COL5A1-201ENST00000371817 TUBB8Q3ZCM7 444 aa17.53■□□□□ 0.4
COL5A1-201ENST00000371817 SSFA2P28290 1259 aa17.52■□□□□ 0.4
COL5A1-201ENST00000371817 FERMT3Q86UX7 667 aa17.52■□□□□ 0.4
COL5A1-201ENST00000371817 INPP5BP32019 993 aa17.52■□□□□ 0.4
COL5A1-201ENST00000371817 SCAPERQ9BY12 1400 aa17.52■□□□□ 0.4
COL5A1-201ENST00000371817 UBAC1Q9BSL1 405 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms