RNA–Protein interactions for RNA: ENST00000368436.1

CKS1B-202, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 2 BASIC

Gene CKS1B, Length 820 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-202ENST00000368436 ARHGAP27Q6ZUM4 889 aa21.58■■□□□ 1.05
CKS1B-202ENST00000368436 IL17REQ8NFR9 667 aa21.58■■□□□ 1.05
CKS1B-202ENST00000368436 PIM2Q9P1W9 311 aa21.58■■□□□ 1.05
CKS1B-202ENST00000368436 ZBTB1Q9Y2K1 713 aa21.58■■□□□ 1.05
CKS1B-202ENST00000368436 COL15A1P39059 1388 aa21.58■■□□□ 1.04
CKS1B-202ENST00000368436 NRXN2Q9P2S2 1712 aa21.58■■□□□ 1.04
CKS1B-202ENST00000368436 GAS2L2Q8NHY3 880 aa21.57■■□□□ 1.04
CKS1B-202ENST00000368436 GNAT3A8MTJ3 354 aa21.56■■□□□ 1.04
CKS1B-202ENST00000368436 KIF3CO14782 793 aa21.55■■□□□ 1.04
CKS1B-202ENST00000368436 BCL2L12Q9HB09 334 aa21.55■■□□□ 1.04
CKS1B-202ENST00000368436 TEFQ10587 303 aa21.54■■□□□ 1.04
CKS1B-202ENST00000368436 NFIXQ14938 502 aa21.54■■□□□ 1.04
CKS1B-202ENST00000368436 DALRD3Q5D0E6 543 aaKnown RBP21.54■■□□□ 1.04
CKS1B-202ENST00000368436 TTC5Q8N0Z6 440 aa21.54■■□□□ 1.04
CKS1B-202ENST00000368436 CHRNA5P30532 468 aa21.53■■□□□ 1.04
CKS1B-202ENST00000368436 ZNF790Q6PG37 636 aa21.53■■□□□ 1.04
CKS1B-202ENST00000368436 DLEC1Q9Y238 1755 aa21.52■■□□□ 1.04
CKS1B-202ENST00000368436 STARD3NLO95772 234 aa21.52■■□□□ 1.04
CKS1B-202ENST00000368436 CANXP27824 592 aaKnown RBP21.52■■□□□ 1.04
CKS1B-202ENST00000368436 EIF5P55010 431 aaKnown RBP21.52■■□□□ 1.04
CKS1B-202ENST00000368436 ZNF496Q96IT1 587 aaPredicted RBP21.52■■□□□ 1.04
CKS1B-202ENST00000368436 CFAP53Q96M91 514 aa21.52■■□□□ 1.04
CKS1B-202ENST00000368436 SBF1O95248 1867 aa21.52■■□□□ 1.03
CKS1B-202ENST00000368436 CEMIPQ8WUJ3 1361 aa21.51■■□□□ 1.03
CKS1B-202ENST00000368436 HEG1Q9ULI3 1381 aa21.51■■□□□ 1.03
CKS1B-202ENST00000368436 HSPA6P17066 643 aa21.51■■□□□ 1.03
CKS1B-202ENST00000368436 PHACTR3Q96KR7 559 aa21.51■■□□□ 1.03
CKS1B-202ENST00000368436 TEX13AQ9BXU3 409 aaPredicted RBP21.51■■□□□ 1.03
CKS1B-202ENST00000368436 RSPH6AQ9H0K4 717 aa21.51■■□□□ 1.03
CKS1B-202ENST00000368436 A0A087WZG4 1122 aa21.49■■□□□ 1.03
CKS1B-202ENST00000368436 SERPINB2P05120 415 aa21.49■■□□□ 1.03
CKS1B-202ENST00000368436 PRKAR2BP31323 418 aa21.49■■□□□ 1.03
CKS1B-202ENST00000368436 C9orf131Q5VYM1 1079 aa21.49■■□□□ 1.03
CKS1B-202ENST00000368436 PPP2R1AP30153 589 aa21.48■■□□□ 1.03
CKS1B-202ENST00000368436 SCN7AQ01118 1682 aa21.47■■□□□ 1.03
CKS1B-202ENST00000368436 FMNL2Q96PY5 1086 aa21.47■■□□□ 1.03
CKS1B-202ENST00000368436 NUDCQ9Y266 331 aa21.47■■□□□ 1.03
CKS1B-202ENST00000368436 IL6STP40189 918 aaPredicted RBP21.45■■□□□ 1.02
CKS1B-202ENST00000368436 ANKRD31Q8N7Z5 1873 aa21.44■■□□□ 1.02
CKS1B-202ENST00000368436 BTBD11A6QL63 1104 aa21.44■■□□□ 1.02
CKS1B-202ENST00000368436 KCNQ3O43525 872 aa21.44■■□□□ 1.02
CKS1B-202ENST00000368436 TOMM70O94826 608 aa21.44■■□□□ 1.02
CKS1B-202ENST00000368436 NMRK2Q9NPI5 230 aa21.44■■□□□ 1.02
CKS1B-202ENST00000368436 U2AF1L5P0DN76 240 aaPredicted RBP21.43■■□□□ 1.02
CKS1B-202ENST00000368436 U2AF1Q01081 240 aaKnown RBP eCLIP21.43■■□□□ 1.02
CKS1B-202ENST00000368436 CARMIL3Q8ND23 1372 aa21.43■■□□□ 1.02
CKS1B-202ENST00000368436 A1BGP04217 495 aa21.42■■□□□ 1.02
CKS1B-202ENST00000368436 CEP350Q5VT06 3117 aa21.42■■□□□ 1.02
CKS1B-202ENST00000368436 TBC1D9BQ66K14 1250 aa21.42■■□□□ 1.02
CKS1B-202ENST00000368436 C2CD5Q86YS7 1000 aa21.42■■□□□ 1.02
CKS1B-202ENST00000368436 RNF181Q9P0P0 153 aa21.42■■□□□ 1.02
CKS1B-202ENST00000368436 TBC1D2BQ9UPU7 963 aa21.42■■□□□ 1.02
CKS1B-202ENST00000368436 BCORQ6W2J9 1755 aa21.41■■□□□ 1.02
CKS1B-202ENST00000368436 BICDL1Q6ZP65 573 aa21.41■■□□□ 1.02
CKS1B-202ENST00000368436 H0YIN7 160 aa21.4■■□□□ 1.02
CKS1B-202ENST00000368436 TTLL6Q8N841 843 aa21.4■■□□□ 1.02
CKS1B-202ENST00000368436 CCDC88AQ3V6T2 1871 aa21.4■■□□□ 1.02
CKS1B-202ENST00000368436 RTF1Q92541 710 aaKnown RBP21.39■■□□□ 1.01
CKS1B-202ENST00000368436 USP16Q9Y5T5 823 aa21.39■■□□□ 1.01
CKS1B-202ENST00000368436 TNRC6CQ9HCJ0 1690 aaKnown RBP21.38■■□□□ 1.01
CKS1B-202ENST00000368436 KDM2BQ8NHM5 1336 aa21.38■■□□□ 1.01
CKS1B-202ENST00000368436 HTATSF1O43719 755 aaKnown RBP21.38■■□□□ 1.01
CKS1B-202ENST00000368436 CAMTA2O94983 1202 aa21.38■■□□□ 1.01
CKS1B-202ENST00000368436 MCM10Q7L590 875 aa21.38■■□□□ 1.01
CKS1B-202ENST00000368436 BRIP1Q9BX63 1249 aa21.38■■□□□ 1.01
CKS1B-202ENST00000368436 PDZRN3Q9UPQ7 1066 aa21.38■■□□□ 1.01
CKS1B-202ENST00000368436 ZNF330Q9Y3S2 320 aaPredicted RBP21.38■■□□□ 1.01
CKS1B-202ENST00000368436 ZC3H4Q9UPT8 1303 aaKnown RBP21.37■■□□□ 1.01
CKS1B-202ENST00000368436 RASSF7Q02833 373 aa21.37■■□□□ 1.01
CKS1B-202ENST00000368436 PRR5LQ6MZQ0 368 aa21.37■■□□□ 1.01
CKS1B-202ENST00000368436 COL11A2P13942 1736 aaPredicted RBP21.37■■□□□ 1.01
CKS1B-202ENST00000368436 DLG5Q8TDM6 1919 aa21.36■■□□□ 1.01
CKS1B-202ENST00000368436 SNRPA1P09661 255 aaKnown RBP21.36■■□□□ 1.01
CKS1B-202ENST00000368436 APLP1P51693 650 aa21.36■■□□□ 1.01
CKS1B-202ENST00000368436 PRELPP51888 382 aa21.36■■□□□ 1.01
CKS1B-202ENST00000368436 NPM2Q86SE8 214 aaKnown RBP21.36■■□□□ 1.01
CKS1B-202ENST00000368436 RBM46Q8TBY0 533 aaKnown RBP21.36■■□□□ 1.01
CKS1B-202ENST00000368436 PRAMEF22A3QJZ6 481 aa21.35■■□□□ 1.01
CKS1B-202ENST00000368436 LMNB1P20700 586 aa21.35■■□□□ 1.01
CKS1B-202ENST00000368436 PDE6BP35913 854 aa21.35■■□□□ 1.01
CKS1B-202ENST00000368436 DCTN1Q14203 1278 aa21.35■■□□□ 1.01
CKS1B-202ENST00000368436 SETDB2Q96T68 719 aa21.35■■□□□ 1.01
CKS1B-202ENST00000368436 DZIP3Q86Y13 1208 aaKnown RBP21.34■■□□□ 1.01
CKS1B-202ENST00000368436 FER1L6Q2WGJ9 1857 aa21.33■■□□□ 1.01
CKS1B-202ENST00000368436 TIAM2Q8IVF5 1701 aa21.33■■□□□ 1.01
CKS1B-202ENST00000368436 NFKBIEO00221 500 aa21.33■■□□□ 1.01
CKS1B-202ENST00000368436 C16orf71Q8IYS4 520 aaPredicted RBP21.33■■□□□ 1.01
CKS1B-202ENST00000368436 RRAGCQ9HB90 399 aa21.33■■□□□ 1.01
CKS1B-202ENST00000368436 DICER1Q9UPY3 1922 aaKnown RBP21.32■■□□□ 1
CKS1B-202ENST00000368436 PIP4K2AP48426 406 aaPredicted RBP21.32■■□□□ 1
CKS1B-202ENST00000368436 TAF7Q15545 349 aaPredicted RBP21.32■■□□□ 1
CKS1B-202ENST00000368436 CLEC4GQ6UXB4 293 aa21.32■■□□□ 1
CKS1B-202ENST00000368436 CCDC24Q8N4L8 307 aa21.32■■□□□ 1
CKS1B-202ENST00000368436 ZNF622Q969S3 477 aaKnown RBP eCLIP21.32■■□□□ 1
CKS1B-202ENST00000368436 ARFGEF2Q9Y6D5 1785 aa21.31■■□□□ 1
CKS1B-202ENST00000368436 FSTL1Q12841 308 aa21.31■■□□□ 1
CKS1B-202ENST00000368436 CNBD1Q8NA66 436 aa21.31■■□□□ 1
CKS1B-202ENST00000368436 WDR90Q96KV7 1748 aa21.31■■□□□ 1
CKS1B-202ENST00000368436 LAMB4A4D0S4 1761 aa21.31■■□□□ 1
CKS1B-202ENST00000368436 CACNA1SQ13698 1873 aa21.3■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms