RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 MARCH10Q8NA82 808 aaPredicted RBP16.61■□□□□ 0.25
SQSTM1-201ENST00000360718 DOT1LQ8TEK3 1739 aa16.6■□□□□ 0.25
SQSTM1-201ENST00000360718 MVPQ14764 893 aaKnown RBP16.6■□□□□ 0.25
SQSTM1-201ENST00000360718 KCPQ6ZWJ8 1503 aa16.59■□□□□ 0.25
SQSTM1-201ENST00000360718 ABCC4O15439 1325 aa16.59■□□□□ 0.25
SQSTM1-201ENST00000360718 PTPRCP08575 1304 aa16.59■□□□□ 0.25
SQSTM1-201ENST00000360718 ANXA1P04083 346 aa16.58■□□□□ 0.25
SQSTM1-201ENST00000360718 ITPRIPQ8IWB1 547 aa16.58■□□□□ 0.25
SQSTM1-201ENST00000360718 TTC5Q8N0Z6 440 aa16.58■□□□□ 0.25
SQSTM1-201ENST00000360718 PIGBQ92521 554 aa16.58■□□□□ 0.25
SQSTM1-201ENST00000360718 CHPF2Q9P2E5 772 aa16.58■□□□□ 0.25
SQSTM1-201ENST00000360718 DDX19BQ9UMR2 479 aa16.58■□□□□ 0.25
SQSTM1-201ENST00000360718 THSD7AQ9UPZ6 1657 aa16.58■□□□□ 0.25
SQSTM1-201ENST00000360718 PHAXQ9H814 394 aaKnown RBP16.57■□□□□ 0.24
SQSTM1-201ENST00000360718 TMOD3Q9NYL9 352 aa16.57■□□□□ 0.24
SQSTM1-201ENST00000360718 ATRNO75882 1429 aa16.57■□□□□ 0.24
SQSTM1-201ENST00000360718 PROSER3Q2NL68 480 aa16.57■□□□□ 0.24
SQSTM1-201ENST00000360718 CHMP4BQ9H444 224 aaKnown RBP16.57■□□□□ 0.24
SQSTM1-201ENST00000360718 FLIIQ13045 1269 aa16.56■□□□□ 0.24
SQSTM1-201ENST00000360718 GJD4Q96KN9 370 aaPredicted RBP16.56■□□□□ 0.24
SQSTM1-201ENST00000360718 ASAP1Q9ULH1 1129 aa16.56■□□□□ 0.24
SQSTM1-201ENST00000360718 BCL9O00512 1426 aa16.56■□□□□ 0.24
SQSTM1-201ENST00000360718 F6X3S4 739 aa16.56■□□□□ 0.24
SQSTM1-201ENST00000360718 FMNL2Q96PY5 1086 aa16.56■□□□□ 0.24
SQSTM1-201ENST00000360718 USP16Q9Y5T5 823 aa16.56■□□□□ 0.24
SQSTM1-201ENST00000360718 C8orf34Q49A92 452 aa16.55■□□□□ 0.24
SQSTM1-201ENST00000360718 PRIM1P49642 420 aaKnown RBP16.54■□□□□ 0.24
SQSTM1-201ENST00000360718 LAMB4A4D0S4 1761 aa16.54■□□□□ 0.24
SQSTM1-201ENST00000360718 PTCD1O75127 700 aaKnown RBP16.54■□□□□ 0.24
SQSTM1-201ENST00000360718 SNRPA1P09661 255 aaKnown RBP16.54■□□□□ 0.24
SQSTM1-201ENST00000360718 PDIA6Q15084 440 aa16.54■□□□□ 0.24
SQSTM1-201ENST00000360718 SYTL4Q96C24 671 aaPredicted RBP16.54■□□□□ 0.24
SQSTM1-201ENST00000360718 ATG3Q9NT62 314 aa16.54■□□□□ 0.24
SQSTM1-201ENST00000360718 RGS3P49796 1198 aa16.53■□□□□ 0.24
SQSTM1-201ENST00000360718 ACSBG1Q96GR2 724 aa16.53■□□□□ 0.24
SQSTM1-201ENST00000360718 A0A0G2JS52 829 aa16.53■□□□□ 0.24
SQSTM1-201ENST00000360718 PCDHB15Q9Y5E8 787 aa16.53■□□□□ 0.24
SQSTM1-201ENST00000360718 PIP4K2AP48426 406 aaPredicted RBP16.52■□□□□ 0.24
SQSTM1-201ENST00000360718 FKBP5Q13451 457 aaPredicted RBP16.52■□□□□ 0.24
SQSTM1-201ENST00000360718 DBF4Q9UBU7 674 aaPredicted RBP16.52■□□□□ 0.24
SQSTM1-201ENST00000360718 TRPC5Q9UL62 973 aaPredicted RBP16.52■□□□□ 0.24
SQSTM1-201ENST00000360718 ZBTB7BO15156 539 aaPredicted RBP16.51■□□□□ 0.23
SQSTM1-201ENST00000360718 INTS3Q68E01 1043 aaKnown RBP16.51■□□□□ 0.23
SQSTM1-201ENST00000360718 N4BP2Q86UW6 1770 aaPredicted RBP16.51■□□□□ 0.23
SQSTM1-201ENST00000360718 FAM182BQ5T319 152 aa16.5■□□□□ 0.23
SQSTM1-201ENST00000360718 QTRT2Q9H974 415 aaKnown RBP16.5■□□□□ 0.23
SQSTM1-201ENST00000360718 ZBTB40Q9NUA8 1239 aa16.5■□□□□ 0.23
SQSTM1-201ENST00000360718 KCNQ2O43526 872 aa16.5■□□□□ 0.23
SQSTM1-201ENST00000360718 IGHDP01880 384 aa16.5■□□□□ 0.23
SQSTM1-201ENST00000360718 LRP10Q7Z4F1 713 aa16.5■□□□□ 0.23
SQSTM1-201ENST00000360718 SLC4A9Q96Q91 983 aa16.5■□□□□ 0.23
SQSTM1-201ENST00000360718 ONECUT3O60422 494 aaPredicted RBP16.49■□□□□ 0.23
SQSTM1-201ENST00000360718 DDX21Q9NR30 783 aaKnown RBP eCLIP16.49■□□□□ 0.23
SQSTM1-201ENST00000360718 SLC4A10Q6U841 1118 aa16.49■□□□□ 0.23
SQSTM1-201ENST00000360718 EP400Q96L91 3159 aa16.49■□□□□ 0.23
SQSTM1-201ENST00000360718 ADCY9O60503 1353 aa16.48■□□□□ 0.23
SQSTM1-201ENST00000360718 MYL6BP14649 208 aa16.48■□□□□ 0.23
SQSTM1-201ENST00000360718 PTF1AQ7RTS3 328 aa16.48■□□□□ 0.23
SQSTM1-201ENST00000360718 NBPF26B4DH59 902 aa16.47■□□□□ 0.23
SQSTM1-201ENST00000360718 CCT4P50991 539 aaKnown RBP16.47■□□□□ 0.23
SQSTM1-201ENST00000360718 NBPF14Q5TI25 921 aa16.47■□□□□ 0.23
SQSTM1-201ENST00000360718 NBPF10Q6P3W6 841 aaKnown RBP16.47■□□□□ 0.23
SQSTM1-201ENST00000360718 NBPF15Q8N660 670 aa16.47■□□□□ 0.23
SQSTM1-201ENST00000360718 HYPKQ9NX55 129 aa16.47■□□□□ 0.23
SQSTM1-201ENST00000360718 PI4KAP2A4QPH2 592 aa16.47■□□□□ 0.23
SQSTM1-201ENST00000360718 SEPT12Q8IYM1 358 aa16.47■□□□□ 0.23
SQSTM1-201ENST00000360718 PI4KAP1Q8N8J0 262 aa16.47■□□□□ 0.23
SQSTM1-201ENST00000360718 RBM42Q9BTD8 480 aaKnown RBP16.47■□□□□ 0.23
SQSTM1-201ENST00000360718 C1orf115Q9H7X2 142 aa16.47■□□□□ 0.23
SQSTM1-201ENST00000360718 DNAJC10Q8IXB1 793 aa16.46■□□□□ 0.23
SQSTM1-201ENST00000360718 RWDD1Q9H446 243 aaPredicted RBP16.46■□□□□ 0.23
SQSTM1-201ENST00000360718 TJP1Q07157 1748 aa16.46■□□□□ 0.23
SQSTM1-201ENST00000360718 A1BGP04217 495 aa16.45■□□□□ 0.22
SQSTM1-201ENST00000360718 AIMP1Q12904 312 aaKnown RBP16.45■□□□□ 0.22
SQSTM1-201ENST00000360718 BRWD3Q6RI45 1802 aa16.45■□□□□ 0.22
SQSTM1-201ENST00000360718 PXDNLA1KZ92 1463 aa16.45■□□□□ 0.22
SQSTM1-201ENST00000360718 FBXO41Q8TF61 875 aa16.45■□□□□ 0.22
SQSTM1-201ENST00000360718 MEIS3Q99687 375 aa16.45■□□□□ 0.22
SQSTM1-201ENST00000360718 XAGE3Q8WTP9 111 aa16.44■□□□□ 0.22
SQSTM1-201ENST00000360718 SBF2Q86WG5 1849 aa16.43■□□□□ 0.22
SQSTM1-201ENST00000360718 COPS6Q7L5N1 327 aa16.43■□□□□ 0.22
SQSTM1-201ENST00000360718 VSIG10Q8N0Z9 540 aa16.43■□□□□ 0.22
SQSTM1-201ENST00000360718 DNAAF4Q8WXU2 420 aa16.43■□□□□ 0.22
SQSTM1-201ENST00000360718 MAP3K2Q9Y2U5 619 aa16.43■□□□□ 0.22
SQSTM1-201ENST00000360718 DDX58O95786 925 aaKnown RBP16.43■□□□□ 0.22
SQSTM1-201ENST00000360718 SLC4A3P48751 1232 aa16.42■□□□□ 0.22
SQSTM1-201ENST00000360718 NFKBIBQ15653 356 aa16.42■□□□□ 0.22
SQSTM1-201ENST00000360718 KSR2Q6VAB6 950 aa16.42■□□□□ 0.22
SQSTM1-201ENST00000360718 NHSQ6T4R5 1651 aa16.42■□□□□ 0.22
SQSTM1-201ENST00000360718 BTAF1O14981 1849 aa16.42■□□□□ 0.22
SQSTM1-201ENST00000360718 BEND3Q5T5X7 828 aa16.42■□□□□ 0.22
SQSTM1-201ENST00000360718 TEX13AQ9BXU3 409 aaPredicted RBP16.42■□□□□ 0.22
SQSTM1-201ENST00000360718 ERBB4Q15303 1308 aa16.41■□□□□ 0.22
SQSTM1-201ENST00000360718 SIRT2Q8IXJ6 389 aa16.41■□□□□ 0.22
SQSTM1-201ENST00000360718 PALLDQ8WX93 1383 aa16.41■□□□□ 0.22
SQSTM1-201ENST00000360718 ARFGEF2Q9Y6D5 1785 aa16.4■□□□□ 0.22
SQSTM1-201ENST00000360718 CYP19A1P11511 503 aaPredicted RBP16.4■□□□□ 0.22
SQSTM1-201ENST00000360718 HDAC1Q13547 482 aaPredicted RBP16.4■□□□□ 0.22
SQSTM1-201ENST00000360718 ATP10DQ9P241 1426 aa16.4■□□□□ 0.22
SQSTM1-201ENST00000360718 ZNF772Q68DY9 489 aaPredicted RBP16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms