RNA–Protein interactions for RNA: ENST00000360001.10

SDF4-202, Transcript of stromal cell derived factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SDF4, Length 1,956 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-202ENST00000360001 LAMB4A4D0S4 1761 aa29.36■■■□□ 2.29
SDF4-202ENST00000360001 PELP1Q8IZL8 1130 aaKnown RBP29.36■■■□□ 2.29
SDF4-202ENST00000360001 PROSER3Q2NL68 480 aa29.35■■■□□ 2.29
SDF4-202ENST00000360001 CENPQQ7L2Z9 268 aaPredicted RBP29.35■■■□□ 2.29
SDF4-202ENST00000360001 USP16Q9Y5T5 823 aa29.35■■■□□ 2.29
SDF4-202ENST00000360001 PDIA6Q15084 440 aa29.34■■■□□ 2.29
SDF4-202ENST00000360001 DDX21Q9NR30 783 aaKnown RBP eCLIP29.34■■■□□ 2.29
SDF4-202ENST00000360001 THSD7AQ9UPZ6 1657 aa29.34■■■□□ 2.29
SDF4-202ENST00000360001 CHMP4BQ9H444 224 aaKnown RBP29.33■■■□□ 2.29
SDF4-202ENST00000360001 KAT6BQ8WYB5 2073 aa29.33■■■□□ 2.29
SDF4-202ENST00000360001 IGHDP01880 384 aa29.33■■■□□ 2.29
SDF4-202ENST00000360001 ASAP1Q9ULH1 1129 aa29.33■■■□□ 2.29
SDF4-202ENST00000360001 ATRNO75882 1429 aa29.33■■■□□ 2.29
SDF4-202ENST00000360001 HYPKQ9NX55 129 aa29.32■■■□□ 2.28
SDF4-202ENST00000360001 N4BP2Q86UW6 1770 aaPredicted RBP29.32■■■□□ 2.28
SDF4-202ENST00000360001 PTCD1O75127 700 aaKnown RBP29.32■■■□□ 2.28
SDF4-202ENST00000360001 SLC4A10Q6U841 1118 aa29.32■■■□□ 2.28
SDF4-202ENST00000360001 ATG3Q9NT62 314 aa29.32■■■□□ 2.28
SDF4-202ENST00000360001 PRIM1P49642 420 aaKnown RBP29.31■■■□□ 2.28
SDF4-202ENST00000360001 CCT4P50991 539 aaKnown RBP29.31■■■□□ 2.28
SDF4-202ENST00000360001 GJD4Q96KN9 370 aaPredicted RBP29.31■■■□□ 2.28
SDF4-202ENST00000360001 PXDNLA1KZ92 1463 aa29.31■■■□□ 2.28
SDF4-202ENST00000360001 SYTL4Q96C24 671 aaPredicted RBP29.28■■■□□ 2.28
SDF4-202ENST00000360001 TRPC5Q9UL62 973 aaPredicted RBP29.28■■■□□ 2.28
SDF4-202ENST00000360001 ADCY9O60503 1353 aa29.26■■■□□ 2.27
SDF4-202ENST00000360001 PI4KAP2A4QPH2 592 aa29.26■■■□□ 2.27
SDF4-202ENST00000360001 LRP10Q7Z4F1 713 aa29.26■■■□□ 2.27
SDF4-202ENST00000360001 PI4KAP1Q8N8J0 262 aa29.26■■■□□ 2.27
SDF4-202ENST00000360001 A0A0G2JS52 829 aa29.24■■■□□ 2.27
SDF4-202ENST00000360001 MYT1Q01538 1121 aa29.24■■■□□ 2.27
SDF4-202ENST00000360001 ACSBG1Q96GR2 724 aa29.24■■■□□ 2.27
SDF4-202ENST00000360001 MYL6BP14649 208 aa29.24■■■□□ 2.27
SDF4-202ENST00000360001 VSIG10Q8N0Z9 540 aa29.24■■■□□ 2.27
SDF4-202ENST00000360001 RWDD1Q9H446 243 aaPredicted RBP29.24■■■□□ 2.27
SDF4-202ENST00000360001 ERBB4Q15303 1308 aa29.23■■■□□ 2.27
SDF4-202ENST00000360001 DNAAF4Q8WXU2 420 aa29.23■■■□□ 2.27
SDF4-202ENST00000360001 C1orf115Q9H7X2 142 aa29.23■■■□□ 2.27
SDF4-202ENST00000360001 HDAC1Q13547 482 aaPredicted RBP29.22■■■□□ 2.27
SDF4-202ENST00000360001 MEIS3Q99687 375 aa29.22■■■□□ 2.27
SDF4-202ENST00000360001 ONECUT3O60422 494 aaPredicted RBP29.22■■■□□ 2.27
SDF4-202ENST00000360001 PIP4K2AP48426 406 aaPredicted RBP29.21■■■□□ 2.27
SDF4-202ENST00000360001 KSR2Q6VAB6 950 aa29.21■■■□□ 2.27
SDF4-202ENST00000360001 RBM42Q9BTD8 480 aaKnown RBP29.2■■■□□ 2.26
SDF4-202ENST00000360001 QTRT2Q9H974 415 aaKnown RBP29.2■■■□□ 2.26
SDF4-202ENST00000360001 NBPF26B4DH59 902 aa29.19■■■□□ 2.26
SDF4-202ENST00000360001 AIMP1Q12904 312 aaKnown RBP29.19■■■□□ 2.26
SDF4-202ENST00000360001 NBPF14Q5TI25 921 aa29.19■■■□□ 2.26
SDF4-202ENST00000360001 NBPF10Q6P3W6 841 aaKnown RBP29.19■■■□□ 2.26
SDF4-202ENST00000360001 NBPF15Q8N660 670 aa29.19■■■□□ 2.26
SDF4-202ENST00000360001 XAGE3Q8WTP9 111 aa29.19■■■□□ 2.26
SDF4-202ENST00000360001 ATP10DQ9P241 1426 aa29.19■■■□□ 2.26
SDF4-202ENST00000360001 BEND3Q5T5X7 828 aa29.19■■■□□ 2.26
SDF4-202ENST00000360001 SLC4A9Q96Q91 983 aa29.19■■■□□ 2.26
SDF4-202ENST00000360001 MAP3K2Q9Y2U5 619 aa29.19■■■□□ 2.26
SDF4-202ENST00000360001 DDX58O95786 925 aaKnown RBP29.18■■■□□ 2.26
SDF4-202ENST00000360001 COPS6Q7L5N1 327 aa29.18■■■□□ 2.26
SDF4-202ENST00000360001 TEX13AQ9BXU3 409 aaPredicted RBP29.18■■■□□ 2.26
SDF4-202ENST00000360001 A1BGP04217 495 aa29.17■■■□□ 2.26
SDF4-202ENST00000360001 DNAJC10Q8IXB1 793 aa29.17■■■□□ 2.26
SDF4-202ENST00000360001 SRCIN1Q9C0H9 1055 aa29.17■■■□□ 2.26
SDF4-202ENST00000360001 KCNQ2O43526 872 aa29.16■■■□□ 2.26
SDF4-202ENST00000360001 SIRT2Q8IXJ6 389 aa29.15■■■□□ 2.26
SDF4-202ENST00000360001 SKAP1Q86WV1 359 aa29.15■■■□□ 2.26
SDF4-202ENST00000360001 TJP1Q07157 1748 aa29.14■■■□□ 2.26
SDF4-202ENST00000360001 SEPT12Q8IYM1 358 aa29.13■■■□□ 2.25
SDF4-202ENST00000360001 USP44Q9H0E7 712 aa29.13■■■□□ 2.25
SDF4-202ENST00000360001 GNAI3P08754 354 aa29.12■■■□□ 2.25
SDF4-202ENST00000360001 STARD3NLO95772 234 aa29.12■■■□□ 2.25
SDF4-202ENST00000360001 RIC3Q7Z5B4 369 aa29.12■■■□□ 2.25
SDF4-202ENST00000360001 ANKRD13DQ6ZTN6 518 aa29.11■■■□□ 2.25
SDF4-202ENST00000360001 ALDH1L1O75891 902 aa29.1■■■□□ 2.25
SDF4-202ENST00000360001 CYP19A1P11511 503 aaPredicted RBP29.1■■■□□ 2.25
SDF4-202ENST00000360001 CEP85Q6P2H3 762 aa29.1■■■□□ 2.25
SDF4-202ENST00000360001 SMC5Q8IY18 1101 aa29.1■■■□□ 2.25
SDF4-202ENST00000360001 ANKRD44Q8N8A2 993 aa29.1■■■□□ 2.25
SDF4-202ENST00000360001 GNAI2P04899 355 aa29.09■■■□□ 2.25
SDF4-202ENST00000360001 LINS1Q8NG48 757 aa29.09■■■□□ 2.25
SDF4-202ENST00000360001 ARFGEF2Q9Y6D5 1785 aa29.09■■■□□ 2.25
SDF4-202ENST00000360001 PALLDQ8WX93 1383 aa29.09■■■□□ 2.25
SDF4-202ENST00000360001 FAM182BQ5T319 152 aa29.08■■■□□ 2.25
SDF4-202ENST00000360001 RPAP2Q8IXW5 612 aaPredicted RBP29.08■■■□□ 2.25
SDF4-202ENST00000360001 NHSQ6T4R5 1651 aa29.08■■■□□ 2.25
SDF4-202ENST00000360001 CICQ96RK0 1608 aaPredicted RBP29.07■■■□□ 2.24
SDF4-202ENST00000360001 SMARCC1Q92922 1105 aaPredicted RBP29.07■■■□□ 2.24
SDF4-202ENST00000360001 METTL22Q9BUU2 404 aaPredicted RBP29.07■■■□□ 2.24
SDF4-202ENST00000360001 CWF19L2Q2TBE0 894 aaKnown RBP29.06■■■□□ 2.24
SDF4-202ENST00000360001 PLBD2Q8NHP8 589 aa29.06■■■□□ 2.24
SDF4-202ENST00000360001 LOC102724428A0A0B4J2F2 783 aa29.06■■■□□ 2.24
SDF4-202ENST00000360001 UBTFL1P0CB47 393 aaPredicted RBP29.06■■■□□ 2.24
SDF4-202ENST00000360001 SIK1P57059 783 aa29.06■■■□□ 2.24
SDF4-202ENST00000360001 TTLL7Q6ZT98 887 aa29.06■■■□□ 2.24
SDF4-202ENST00000360001 PTF1AQ7RTS3 328 aa29.06■■■□□ 2.24
SDF4-202ENST00000360001 NUP188Q5SRE5 1749 aa29.05■■■□□ 2.24
SDF4-202ENST00000360001 IGKV5-2P06315 115 aa29.05■■■□□ 2.24
SDF4-202ENST00000360001 PDZRN3Q9UPQ7 1066 aa29.05■■■□□ 2.24
SDF4-202ENST00000360001 IBTKQ9P2D0 1353 aaPredicted RBP29.05■■■□□ 2.24
SDF4-202ENST00000360001 ZNF772Q68DY9 489 aaPredicted RBP29.04■■■□□ 2.24
SDF4-202ENST00000360001 SBF2Q86WG5 1849 aa29.04■■■□□ 2.24
SDF4-202ENST00000360001 BTAF1O14981 1849 aa29.04■■■□□ 2.24
SDF4-202ENST00000360001 NBPF7P0C2Y1 421 aaPredicted RBP29.03■■■□□ 2.24
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms