RNA–Protein interactions for RNA: ENST00000359082.3

SHANK1-202, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 5 BASIC

Gene SHANK1, Length 6,459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-202ENST00000359082 GBP3Q9H0R5 595 aa21.34■■□□□ 1.01
SHANK1-202ENST00000359082 SLC12A7Q9Y666 1083 aa21.34■■□□□ 1.01
SHANK1-202ENST00000359082 DNAI2Q9GZS0 605 aa21.34■■□□□ 1.01
SHANK1-202ENST00000359082 KIF4BQ2VIQ3 1234 aa21.34■■□□□ 1.01
SHANK1-202ENST00000359082 LARP6Q9BRS8 491 aaKnown RBP21.34■■□□□ 1.01
SHANK1-202ENST00000359082 TOP2BQ02880 1626 aa21.34■■□□□ 1.01
SHANK1-202ENST00000359082 CCDC8Q9H0W5 538 aaPredicted RBP21.34■■□□□ 1.01
SHANK1-202ENST00000359082 GSTTP1A0A1W2PQM5 241 aa21.33■■□□□ 1.01
SHANK1-202ENST00000359082 ZNF652Q9Y2D9 606 aa21.33■■□□□ 1.01
SHANK1-202ENST00000359082 CBX1P83916 185 aa21.33■■□□□ 1.01
SHANK1-202ENST00000359082 CUL5Q93034 780 aa21.33■■□□□ 1.01
SHANK1-202ENST00000359082 PRDM10Q9NQV6 1147 aa21.33■■□□□ 1.01
SHANK1-202ENST00000359082 GLRX3O76003 335 aaKnown RBP21.33■■□□□ 1
SHANK1-202ENST00000359082 SLFN5Q08AF3 891 aa21.33■■□□□ 1
SHANK1-202ENST00000359082 UBE4AQ14139 1066 aa21.33■■□□□ 1
SHANK1-202ENST00000359082 ANKLE2Q86XL3 938 aa21.33■■□□□ 1
SHANK1-202ENST00000359082 DNMBPQ6XZF7 1577 aa21.33■■□□□ 1
SHANK1-202ENST00000359082 ZNF444Q8N0Y2 327 aaPredicted RBP21.32■■□□□ 1
SHANK1-202ENST00000359082 MACROD2A1Z1Q3 448 aa21.32■■□□□ 1
SHANK1-202ENST00000359082 MYCNP04198 464 aaPredicted RBP21.32■■□□□ 1
SHANK1-202ENST00000359082 CCDC184Q52MB2 194 aa21.32■■□□□ 1
SHANK1-202ENST00000359082 NLRP5P59047 1200 aa21.32■■□□□ 1
SHANK1-202ENST00000359082 LARP1Q6PKG0 1096 aaKnown RBP21.32■■□□□ 1
SHANK1-202ENST00000359082 CCDC150Q8NCX0 1101 aa21.32■■□□□ 1
SHANK1-202ENST00000359082 ATAD2Q6PL18 1390 aa21.31■■□□□ 1
SHANK1-202ENST00000359082 TMEM266Q2M3C6 531 aa21.31■■□□□ 1
SHANK1-202ENST00000359082 MAP9Q49MG5 647 aa21.31■■□□□ 1
SHANK1-202ENST00000359082 CTCFLQ8NI51 663 aaPredicted RBP21.31■■□□□ 1
SHANK1-202ENST00000359082 TDRD12Q587J7 1177 aaKnown RBP21.31■■□□□ 1
SHANK1-202ENST00000359082 CCT2P78371 535 aaKnown RBP21.31■■□□□ 1
SHANK1-202ENST00000359082 VPS36Q86VN1 386 aa21.31■■□□□ 1
SHANK1-202ENST00000359082 TRMT1Q9NXH9 659 aaKnown RBP21.31■■□□□ 1
SHANK1-202ENST00000359082 ZNF213O14771 459 aa21.3■■□□□ 1
SHANK1-202ENST00000359082 CKAP2LQ8IYA6 745 aa21.3■■□□□ 1
SHANK1-202ENST00000359082 NUDT16Q96DE0 195 aaKnown RBP21.3■■□□□ 1
SHANK1-202ENST00000359082 PHAXQ9H814 394 aaKnown RBP21.3■■□□□ 1
SHANK1-202ENST00000359082 RPGRIP1LQ68CZ1 1315 aa21.3■■□□□ 1
SHANK1-202ENST00000359082 GOLGA8AA7E2F4 631 aa21.3■■□□□ 1
SHANK1-202ENST00000359082 GOLGA8BA8MQT2 603 aa21.3■■□□□ 1
SHANK1-202ENST00000359082 POLA1P09884 1462 aaPredicted RBP21.3■■□□□ 1
SHANK1-202ENST00000359082 CCDC144CPQ8IYA2 1237 aa21.3■■□□□ 1
SHANK1-202ENST00000359082 CNNM3Q8NE01 707 aa21.3■■□□□ 1
SHANK1-202ENST00000359082 SUPT6HQ7KZ85 1726 aaKnown RBP21.3■■□□□ 1
SHANK1-202ENST00000359082 SLC5A1P13866 664 aa21.3■■□□□ 1
SHANK1-202ENST00000359082 ZSCAN30Q86W11 494 aa21.3■■□□□ 1
SHANK1-202ENST00000359082 PDIA4P13667 645 aaKnown RBP21.29■■□□□ 1
SHANK1-202ENST00000359082 ZNF219Q9P2Y4 722 aaPredicted RBP21.29■■□□□ 1
SHANK1-202ENST00000359082 MAP3K12Q12852 859 aa21.29■■□□□ 1
SHANK1-202ENST00000359082 PRKCSHP14314 528 aaPredicted RBP21.29■■□□□ 1
SHANK1-202ENST00000359082 GIMAP7Q8NHV1 300 aa21.29■■□□□ 1
SHANK1-202ENST00000359082 SLTMQ9NWH9 1034 aaKnown RBP eCLIP21.29■■□□□ 1
SHANK1-202ENST00000359082 SLC4A8Q2Y0W8 1093 aa21.29■■□□□ 1
SHANK1-202ENST00000359082 ARAP1Q96P48 1450 aa21.28■■□□□ 1
SHANK1-202ENST00000359082 CCDC196A0A1B0GTZ2 297 aa21.28■■□□□ 1
SHANK1-202ENST00000359082 FGFR1OPO95684 399 aaKnown RBP21.28■■□□□ 1
SHANK1-202ENST00000359082 RNF187Q5TA31 235 aaPredicted RBP21.28■■□□□ 1
SHANK1-202ENST00000359082 WDR78Q5VTH9 848 aa21.28■■□□□ 1
SHANK1-202ENST00000359082 GCOM1H8Y6P7 765 aaPredicted RBP21.28■■□□□ 1
SHANK1-202ENST00000359082 MYZAPP0CAP1 466 aa21.28■■□□□ 1
SHANK1-202ENST00000359082 KIF18AQ8NI77 898 aa21.28■■□□□ 1
SHANK1-202ENST00000359082 POLR3GO15318 223 aaPredicted RBP21.28■■□□□ 1
SHANK1-202ENST00000359082 TRMT1LQ7Z2T5 733 aaKnown RBP21.28■■□□□ 1
SHANK1-202ENST00000359082 F6X3S4 739 aa21.28■■□□□ 1
SHANK1-202ENST00000359082 STAMBPO95630 424 aa21.28■■□□□ 1
SHANK1-202ENST00000359082 KIF2AO00139 706 aaPredicted RBP21.28■■□□□ 1
SHANK1-202ENST00000359082 IFIT5Q13325 482 aaKnown RBP21.28■■□□□ 1
SHANK1-202ENST00000359082 TTLL12Q14166 644 aaPredicted RBP21.28■■□□□ 1
SHANK1-202ENST00000359082 SKAP1Q86WV1 359 aa21.27■■□□□ 1
SHANK1-202ENST00000359082 FERMT2Q96AC1 680 aa21.27■■□□□ 1
SHANK1-202ENST00000359082 USO1O60763 962 aaKnown RBP21.27■■□□□ 1
SHANK1-202ENST00000359082 YEATS4O95619 227 aa21.27■■□□□ 1
SHANK1-202ENST00000359082 SPTY2D1Q68D10 685 aaPredicted RBP21.27■■□□□ 1
SHANK1-202ENST00000359082 TICAM2Q86XR7 235 aa21.27■■□□□ 1
SHANK1-202ENST00000359082 IFIT3O14879 490 aaKnown RBP21.27■■□□□ 1
SHANK1-202ENST00000359082 SSFA2P28290 1259 aa21.27■■□□□ 1
SHANK1-202ENST00000359082 SCAND2PQ9GZW5 306 aaPredicted RBP21.27■■□□□ 1
SHANK1-202ENST00000359082 MCM3P25205 808 aa21.27■□□□□ 0.99
SHANK1-202ENST00000359082 CTNNA2P26232 953 aa21.26■□□□□ 0.99
SHANK1-202ENST00000359082 SH2B1Q9NRF2 756 aaPredicted RBP21.26■□□□□ 0.99
SHANK1-202ENST00000359082 CCDC194A0A1B0GVG4 234 aa21.26■□□□□ 0.99
SHANK1-202ENST00000359082 RAB34Q9BZG1 259 aa21.26■□□□□ 0.99
SHANK1-202ENST00000359082 IQCA1Q86XH1 822 aa21.26■□□□□ 0.99
SHANK1-202ENST00000359082 TRMT112Q9UI30 125 aaKnown RBP21.26■□□□□ 0.99
SHANK1-202ENST00000359082 NF2P35240 595 aa21.26■□□□□ 0.99
SHANK1-202ENST00000359082 TAF7Q15545 349 aaPredicted RBP21.26■□□□□ 0.99
SHANK1-202ENST00000359082 HMGB1P09429 215 aaKnown RBP21.25■□□□□ 0.99
SHANK1-202ENST00000359082 FSIP1Q8NA03 581 aa21.25■□□□□ 0.99
SHANK1-202ENST00000359082 BIN1O00499 593 aa21.25■□□□□ 0.99
SHANK1-202ENST00000359082 MTIF2P46199 727 aaKnown RBP21.25■□□□□ 0.99
SHANK1-202ENST00000359082 MPRIPQ6WCQ1 1025 aa21.25■□□□□ 0.99
SHANK1-202ENST00000359082 KCNH5Q8NCM2 988 aa21.25■□□□□ 0.99
SHANK1-202ENST00000359082 RPGRQ92834 1020 aaKnown RBP21.25■□□□□ 0.99
SHANK1-202ENST00000359082 TMC6Q7Z403 805 aa21.25■□□□□ 0.99
SHANK1-202ENST00000359082 EHMT1Q9H9B1 1298 aa21.25■□□□□ 0.99
SHANK1-202ENST00000359082 HOOK3Q86VS8 718 aa21.25■□□□□ 0.99
SHANK1-202ENST00000359082 CATIPQ7Z7H3 387 aa21.24■□□□□ 0.99
SHANK1-202ENST00000359082 TMCO5BA8MYB1 307 aa21.24■□□□□ 0.99
SHANK1-202ENST00000359082 ISM2Q6H9L7 571 aa21.24■□□□□ 0.99
SHANK1-202ENST00000359082 CEP63Q96MT8 703 aa21.24■□□□□ 0.99
SHANK1-202ENST00000359082 PLEKHH1Q9ULM0 1364 aa21.24■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 1885.2 ms