RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 APAF1O14727 1248 aa22.26■■□□□ 1.15
CLN3-203ENST00000357806 POLD1P28340 1107 aa22.26■■□□□ 1.15
CLN3-203ENST00000357806 MIS18AQ9NYP9 233 aa22.26■■□□□ 1.15
CLN3-203ENST00000357806 TRIM35Q9UPQ4 493 aa22.26■■□□□ 1.15
CLN3-203ENST00000357806 SCN7AQ01118 1682 aa22.25■■□□□ 1.15
CLN3-203ENST00000357806 MSL1Q68DK7 614 aa22.24■■□□□ 1.15
CLN3-203ENST00000357806 ZBTB1Q9Y2K1 713 aa22.24■■□□□ 1.15
CLN3-203ENST00000357806 BCORQ6W2J9 1755 aa22.24■■□□□ 1.15
CLN3-203ENST00000357806 SOS1Q07889 1333 aaPredicted RBP22.23■■□□□ 1.15
CLN3-203ENST00000357806 SNRPA1P09661 255 aaKnown RBP22.23■■□□□ 1.15
CLN3-203ENST00000357806 RFC4P35249 363 aa22.23■■□□□ 1.15
CLN3-203ENST00000357806 ARHGEF1Q92888 912 aaKnown RBP22.23■■□□□ 1.15
CLN3-203ENST00000357806 BABAM1Q9NWV8 329 aa22.23■■□□□ 1.15
CLN3-203ENST00000357806 TSPYL4Q9UJ04 414 aa22.23■■□□□ 1.15
CLN3-203ENST00000357806 COL15A1P39059 1388 aa22.23■■□□□ 1.15
CLN3-203ENST00000357806 ARXQ96QS3 562 aa22.22■■□□□ 1.15
CLN3-203ENST00000357806 CANXP27824 592 aaKnown RBP22.2■■□□□ 1.14
CLN3-203ENST00000357806 PRAMEF22A3QJZ6 481 aa22.19■■□□□ 1.14
CLN3-203ENST00000357806 EIF4A1P60842 406 aaKnown RBP22.19■■□□□ 1.14
CLN3-203ENST00000357806 KIF13BQ9NQT8 1826 aa22.19■■□□□ 1.14
CLN3-203ENST00000357806 USP42Q9H9J4 1324 aaKnown RBP22.18■■□□□ 1.14
CLN3-203ENST00000357806 FAM9BQ8IZU0 186 aa22.18■■□□□ 1.14
CLN3-203ENST00000357806 USP16Q9Y5T5 823 aa22.18■■□□□ 1.14
CLN3-203ENST00000357806 CALD1Q05682 793 aaKnown RBP22.17■■□□□ 1.14
CLN3-203ENST00000357806 AFDNP55196 1824 aaKnown RBP22.17■■□□□ 1.14
CLN3-203ENST00000357806 GYS1P13807 737 aa22.16■■□□□ 1.14
CLN3-203ENST00000357806 IL6STP40189 918 aaPredicted RBP22.16■■□□□ 1.14
CLN3-203ENST00000357806 LAS1LQ9Y4W2 734 aaKnown RBP22.16■■□□□ 1.14
CLN3-203ENST00000357806 ZPR1O75312 459 aa22.15■■□□□ 1.14
CLN3-203ENST00000357806 GIGYF1O75420 1035 aaPredicted RBP22.15■■□□□ 1.14
CLN3-203ENST00000357806 A1BGP04217 495 aa22.15■■□□□ 1.14
CLN3-203ENST00000357806 EIF5P55010 431 aaKnown RBP22.15■■□□□ 1.14
CLN3-203ENST00000357806 NLGN1Q8N2Q7 840 aa22.15■■□□□ 1.14
CLN3-203ENST00000357806 FHDC1Q9C0D6 1143 aaPredicted RBP22.15■■□□□ 1.14
CLN3-203ENST00000357806 A0A087WZG4 1122 aa22.15■■□□□ 1.14
CLN3-203ENST00000357806 CHL1O00533 1208 aa22.15■■□□□ 1.14
CLN3-203ENST00000357806 NPM2Q86SE8 214 aaKnown RBP22.15■■□□□ 1.14
CLN3-203ENST00000357806 SRP68Q9UHB9 627 aaKnown RBP22.15■■□□□ 1.14
CLN3-203ENST00000357806 CCDC27Q2M243 656 aa22.14■■□□□ 1.13
CLN3-203ENST00000357806 DIEXFQ68CQ4 756 aaKnown RBP22.14■■□□□ 1.13
CLN3-203ENST00000357806 CFAP44Q96MT7 982 aa22.14■■□□□ 1.13
CLN3-203ENST00000357806 NARFQ9UHQ1 456 aa22.14■■□□□ 1.13
CLN3-203ENST00000357806 ZNF330Q9Y3S2 320 aaPredicted RBP22.14■■□□□ 1.13
CLN3-203ENST00000357806 CCER2I3L3R5 266 aa22.13■■□□□ 1.13
CLN3-203ENST00000357806 NCBP3Q53F19 620 aaKnown RBP22.13■■□□□ 1.13
CLN3-203ENST00000357806 NUP98P52948 1817 aa22.12■■□□□ 1.13
CLN3-203ENST00000357806 USPL1Q5W0Q7 1092 aa22.12■■□□□ 1.13
CLN3-203ENST00000357806 KLHL34Q8N239 644 aa22.12■■□□□ 1.13
CLN3-203ENST00000357806 IFT57Q9NWB7 429 aa22.12■■□□□ 1.13
CLN3-203ENST00000357806 NRXN2Q9P2S2 1712 aa22.12■■□□□ 1.13
CLN3-203ENST00000357806 MMP10P09238 476 aa22.11■■□□□ 1.13
CLN3-203ENST00000357806 SYT17Q9BSW7 474 aa22.11■■□□□ 1.13
CLN3-203ENST00000357806 PIP4K2AP48426 406 aaPredicted RBP22.1■■□□□ 1.13
CLN3-203ENST00000357806 GNAI1P63096 354 aa22.1■■□□□ 1.13
CLN3-203ENST00000357806 SENP3-EIF4A1A0A087X0R7 540 aa22.09■■□□□ 1.13
CLN3-203ENST00000357806 FKBP8Q14318 412 aa22.09■■□□□ 1.13
CLN3-203ENST00000357806 KIAA1551Q9HCM1 1747 aa22.09■■□□□ 1.13
CLN3-203ENST00000357806 N4BP2Q86UW6 1770 aaPredicted RBP22.09■■□□□ 1.13
CLN3-203ENST00000357806 ZNF853P0CG23 659 aa22.09■■□□□ 1.13
CLN3-203ENST00000357806 WWC1Q8IX03 1113 aa22.09■■□□□ 1.13
CLN3-203ENST00000357806 MBIPQ9NS73 344 aa22.09■■□□□ 1.13
CLN3-203ENST00000357806 ERBB4Q15303 1308 aa22.08■■□□□ 1.13
CLN3-203ENST00000357806 NBPF26B4DH59 902 aa22.08■■□□□ 1.12
CLN3-203ENST00000357806 NBPF10Q6P3W6 841 aaKnown RBP22.08■■□□□ 1.12
CLN3-203ENST00000357806 NBPF15Q8N660 670 aa22.08■■□□□ 1.12
CLN3-203ENST00000357806 PARP3Q9Y6F1 533 aa22.08■■□□□ 1.12
CLN3-203ENST00000357806 DZIP3Q86Y13 1208 aaKnown RBP22.07■■□□□ 1.12
CLN3-203ENST00000357806 TBC1D2BQ9UPU7 963 aa22.07■■□□□ 1.12
CLN3-203ENST00000357806 ANKRD36CQ5JPF3 1778 aa22.07■■□□□ 1.12
CLN3-203ENST00000357806 BRCA1P38398 1863 aaKnown RBP22.06■■□□□ 1.12
CLN3-203ENST00000357806 HOXB7P09629 217 aa22.05■■□□□ 1.12
CLN3-203ENST00000357806 NGEFQ8N5V2 710 aa22.05■■□□□ 1.12
CLN3-203ENST00000357806 BCL2L12Q9HB09 334 aa22.05■■□□□ 1.12
CLN3-203ENST00000357806 CD2APQ9Y5K6 639 aa22.05■■□□□ 1.12
CLN3-203ENST00000357806 C10orf71Q711Q0 1435 aa22.05■■□□□ 1.12
CLN3-203ENST00000357806 EIF2S2P20042 333 aaKnown RBP22.04■■□□□ 1.12
CLN3-203ENST00000357806 IL16Q14005 1332 aa22.04■■□□□ 1.12
CLN3-203ENST00000357806 KRT24Q2M2I5 525 aa22.04■■□□□ 1.12
CLN3-203ENST00000357806 SALL2Q9Y467 1007 aaPredicted RBP22.04■■□□□ 1.12
CLN3-203ENST00000357806 CAMTA2O94983 1202 aa22.03■■□□□ 1.12
CLN3-203ENST00000357806 CACNA1FO60840 1977 aa22.03■■□□□ 1.12
CLN3-203ENST00000357806 MYL6BP14649 208 aa22.03■■□□□ 1.12
CLN3-203ENST00000357806 TM4SF1P30408 202 aa22.03■■□□□ 1.12
CLN3-203ENST00000357806 DDR1Q08345 913 aa22.03■■□□□ 1.12
CLN3-203ENST00000357806 DLEC1Q9Y238 1755 aa22.02■■□□□ 1.12
CLN3-203ENST00000357806 POLRMTO00411 1230 aaKnown RBP22.02■■□□□ 1.12
CLN3-203ENST00000357806 NFIXQ14938 502 aa22.02■■□□□ 1.12
CLN3-203ENST00000357806 NLGN2Q8NFZ4 835 aa22.02■■□□□ 1.12
CLN3-203ENST00000357806 ZNF652Q9Y2D9 606 aa22.02■■□□□ 1.12
CLN3-203ENST00000357806 ANKRD31Q8N7Z5 1873 aa22.01■■□□□ 1.11
CLN3-203ENST00000357806 CHD4Q14839 1912 aa22.01■■□□□ 1.11
CLN3-203ENST00000357806 DCAF8L1A6NGE4 600 aa22.01■■□□□ 1.11
CLN3-203ENST00000357806 WDR63Q8IWG1 891 aa22.01■■□□□ 1.11
CLN3-203ENST00000357806 RGL2O15211 777 aa22■■□□□ 1.11
CLN3-203ENST00000357806 HDGFL1Q5TGJ6 251 aa22■■□□□ 1.11
CLN3-203ENST00000357806 DUSP27Q5VZP5 1158 aa22■■□□□ 1.11
CLN3-203ENST00000357806 CARMIL3Q8ND23 1372 aa21.99■■□□□ 1.11
CLN3-203ENST00000357806 ARFGEF2Q9Y6D5 1785 aa21.99■■□□□ 1.11
CLN3-203ENST00000357806 TBC1D9BQ66K14 1250 aa21.99■■□□□ 1.11
CLN3-203ENST00000357806 CLEC4GQ6UXB4 293 aa21.99■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 473.5 ms