RNA–Protein interactions for RNA: ENST00000355354.11

CD47-201, Transcript of CD47 molecule, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CD47, Length 5,020 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD47-201ENST00000355354 PRRC2BQ5JSZ5 2229 aaKnown RBP7.45□□□□□ -1.22
CD47-201ENST00000355354 SSH1Q8WYL5 1049 aa7.45□□□□□ -1.22
CD47-201ENST00000355354 PHF23Q9BUL5 403 aaPredicted RBP7.45□□□□□ -1.22
CD47-201ENST00000355354 EMILIN1Q9Y6C2 1016 aa7.45□□□□□ -1.22
CD47-201ENST00000355354 NINLQ9Y2I6 1382 aa7.45□□□□□ -1.22
CD47-201ENST00000355354 SEPT12Q8IYM1 358 aa7.44□□□□□ -1.22
CD47-201ENST00000355354 PLSCR1O15162 318 aa7.44□□□□□ -1.22
CD47-201ENST00000355354 RRS1Q15050 365 aaKnown RBP7.44□□□□□ -1.22
CD47-201ENST00000355354 NSD3Q9BZ95 1437 aa7.44□□□□□ -1.22
CD47-201ENST00000355354 PRAMEF22A3QJZ6 481 aa7.44□□□□□ -1.22
CD47-201ENST00000355354 FOXD4L6Q3SYB3 417 aaPredicted RBP7.44□□□□□ -1.22
CD47-201ENST00000355354 FOXD4L3Q6VB84 417 aaPredicted RBP7.44□□□□□ -1.22
CD47-201ENST00000355354 ARID3AQ99856 593 aa7.43□□□□□ -1.22
CD47-201ENST00000355354 XRCC6P12956 609 aaKnown RBP eCLIP7.43□□□□□ -1.22
CD47-201ENST00000355354 SNED1Q8TER0 1413 aa7.43□□□□□ -1.22
CD47-201ENST00000355354 ACEP12821 1306 aa7.43□□□□□ -1.22
CD47-201ENST00000355354 TRIM27P14373 513 aa7.43□□□□□ -1.22
CD47-201ENST00000355354 ARHGEF25Q86VW2 580 aa7.43□□□□□ -1.22
CD47-201ENST00000355354 C17orf53Q8N3J3 647 aaPredicted RBP7.43□□□□□ -1.22
CD47-201ENST00000355354 G2E3Q7L622 706 aa7.42□□□□□ -1.22
CD47-201ENST00000355354 KDM6AO15550 1401 aaPredicted RBP7.42□□□□□ -1.22
CD47-201ENST00000355354 A0A0G2JLW4 131 aa7.42□□□□□ -1.22
CD47-201ENST00000355354 SMARCA5O60264 1052 aaPredicted RBP7.42□□□□□ -1.22
CD47-201ENST00000355354 CPA1P15085 419 aa7.42□□□□□ -1.22
CD47-201ENST00000355354 NDUFB9Q9Y6M9 179 aa7.42□□□□□ -1.22
CD47-201ENST00000355354 RTL1A6NKG5 1358 aa7.42□□□□□ -1.22
CD47-201ENST00000355354 RARSP54136 660 aaKnown RBP7.41□□□□□ -1.22
CD47-201ENST00000355354 C8orf58Q8NAV2 365 aa7.41□□□□□ -1.22
CD47-201ENST00000355354 ZDHHC9Q9Y397 364 aa7.41□□□□□ -1.22
CD47-201ENST00000355354 A0A1W2PP64 1363 aa7.41□□□□□ -1.22
CD47-201ENST00000355354 CABLES1Q8TDN4 633 aa7.41□□□□□ -1.22
CD47-201ENST00000355354 USP16Q9Y5T5 823 aa7.41□□□□□ -1.22
CD47-201ENST00000355354 FYB1O15117 783 aa7.41□□□□□ -1.22
CD47-201ENST00000355354 PIP4K2AP48426 406 aaPredicted RBP7.41□□□□□ -1.22
CD47-201ENST00000355354 ESCO1Q5FWF5 840 aa7.41□□□□□ -1.22
CD47-201ENST00000355354 NLRP13Q86W25 1043 aa7.41□□□□□ -1.22
CD47-201ENST00000355354 ZGPATQ8N5A5 531 aaKnown RBP7.41□□□□□ -1.22
CD47-201ENST00000355354 NGLY1Q96IV0 654 aa7.41□□□□□ -1.22
CD47-201ENST00000355354 CHGAP10645 457 aaKnown RBP7.41□□□□□ -1.22
CD47-201ENST00000355354 DDX60Q8IY21 1712 aaKnown RBP7.41□□□□□ -1.22
CD47-201ENST00000355354 APBB1O00213 710 aa7.4□□□□□ -1.22
CD47-201ENST00000355354 TPRNQ4KMQ1 711 aa7.4□□□□□ -1.22
CD47-201ENST00000355354 LNPKQ9C0E8 428 aa7.4□□□□□ -1.22
CD47-201ENST00000355354 COL4A1P02462 1669 aa7.4□□□□□ -1.22
CD47-201ENST00000355354 MYBBP1AQ9BQG0 1328 aaKnown RBP7.4□□□□□ -1.22
CD47-201ENST00000355354 KIF24Q5T7B8 1368 aa7.4□□□□□ -1.22
CD47-201ENST00000355354 DEFB132Q7Z7B7 95 aa7.4□□□□□ -1.22
CD47-201ENST00000355354 AKT1S1Q96B36 256 aa7.4□□□□□ -1.22
CD47-201ENST00000355354 NUDT16Q96DE0 195 aaKnown RBP7.4□□□□□ -1.22
CD47-201ENST00000355354 WDR17Q8IZU2 1322 aa7.4□□□□□ -1.22
CD47-201ENST00000355354 NECTIN2Q92692 538 aa7.4□□□□□ -1.23
CD47-201ENST00000355354 F6X3S4 739 aa7.4□□□□□ -1.23
CD47-201ENST00000355354 GSPT1P15170 499 aaKnown RBP7.4□□□□□ -1.23
CD47-201ENST00000355354 EXOSC9Q06265 439 aaKnown RBP7.39□□□□□ -1.23
CD47-201ENST00000355354 NUTM2GQ5VZR2 741 aa7.39□□□□□ -1.23
CD47-201ENST00000355354 KRT27Q7Z3Y8 459 aa7.39□□□□□ -1.23
CD47-201ENST00000355354 PLEKHF1Q96S99 279 aa7.39□□□□□ -1.23
CD47-201ENST00000355354 TAF1P21675 1872 aa7.39□□□□□ -1.23
CD47-201ENST00000355354 STAG3Q9UJ98 1225 aa7.39□□□□□ -1.23
CD47-201ENST00000355354 MINK1Q8N4C8 1332 aaPredicted RBP7.39□□□□□ -1.23
CD47-201ENST00000355354 GDPD2Q9HCC8 539 aa7.39□□□□□ -1.23
CD47-201ENST00000355354 PALD1Q9ULE6 856 aa7.39□□□□□ -1.23
CD47-201ENST00000355354 WTIPA6NIX2 430 aaPredicted RBP7.38□□□□□ -1.23
CD47-201ENST00000355354 SMIM22K7EJ46 135 aa7.38□□□□□ -1.23
CD47-201ENST00000355354 PPM1GO15355 546 aaPredicted RBP7.38□□□□□ -1.23
CD47-201ENST00000355354 AP5Z1O43299 807 aa7.38□□□□□ -1.23
CD47-201ENST00000355354 MARCH10Q8NA82 808 aaPredicted RBP7.38□□□□□ -1.23
CD47-201ENST00000355354 PDZRN3Q9UPQ7 1066 aa7.38□□□□□ -1.23
CD47-201ENST00000355354 NUP98P52948 1817 aa7.38□□□□□ -1.23
CD47-201ENST00000355354 TMEM57Q8N5G2 664 aa7.38□□□□□ -1.23
CD47-201ENST00000355354 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.38□□□□□ -1.23
CD47-201ENST00000355354 XPCQ01831 940 aaPredicted RBP7.38□□□□□ -1.23
CD47-201ENST00000355354 NAA30Q147X3 362 aaPredicted RBP7.38□□□□□ -1.23
CD47-201ENST00000355354 C10orf71Q711Q0 1435 aa7.38□□□□□ -1.23
CD47-201ENST00000355354 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.38□□□□□ -1.23
CD47-201ENST00000355354 KCNQ3O43525 872 aa7.37□□□□□ -1.23
CD47-201ENST00000355354 FOXD4L5Q5VV16 416 aaPredicted RBP7.37□□□□□ -1.23
CD47-201ENST00000355354 NME9Q86XW9 330 aa7.37□□□□□ -1.23
CD47-201ENST00000355354 FOXD4L4Q8WXT5 416 aaPredicted RBP7.37□□□□□ -1.23
CD47-201ENST00000355354 CDK19Q9BWU1 502 aa7.37□□□□□ -1.23
CD47-201ENST00000355354 TTC21AQ8NDW8 1320 aa7.37□□□□□ -1.23
CD47-201ENST00000355354 GAS2L2Q8NHY3 880 aa7.37□□□□□ -1.23
CD47-201ENST00000355354 ERBB3P21860 1342 aa7.37□□□□□ -1.23
CD47-201ENST00000355354 NEFLP07196 543 aa7.37□□□□□ -1.23
CD47-201ENST00000355354 PDGFDQ9GZP0 370 aaPredicted RBP7.37□□□□□ -1.23
CD47-201ENST00000355354 BTG4Q9NY30 223 aa7.37□□□□□ -1.23
CD47-201ENST00000355354 LARP1Q6PKG0 1096 aaKnown RBP7.37□□□□□ -1.23
CD47-201ENST00000355354 FAM173BQ6P4H8 233 aa7.36□□□□□ -1.23
CD47-201ENST00000355354 ADAMTS2O95450 1211 aa7.36□□□□□ -1.23
CD47-201ENST00000355354 HSP90AB2PQ58FF8 381 aa7.36□□□□□ -1.23
CD47-201ENST00000355354 RBBP6Q7Z6E9 1792 aaKnown RBP7.36□□□□□ -1.23
CD47-201ENST00000355354 IGSF3O75054 1194 aa7.36□□□□□ -1.23
CD47-201ENST00000355354 CCDC61Q9Y6R9 512 aa7.36□□□□□ -1.23
CD47-201ENST00000355354 EZH2Q15910 746 aaKnown RBP7.36□□□□□ -1.23
CD47-201ENST00000355354 PXDNLA1KZ92 1463 aa7.35□□□□□ -1.23
CD47-201ENST00000355354 CELSR1Q9NYQ6 3014 aa7.35□□□□□ -1.23
CD47-201ENST00000355354 NUTM2BA6NNL0 878 aaPredicted RBP7.35□□□□□ -1.23
CD47-201ENST00000355354 NUTM2EB1AL46 878 aaPredicted RBP7.35□□□□□ -1.23
CD47-201ENST00000355354 NUTM2AQ8IVF1 878 aaPredicted RBP7.35□□□□□ -1.23
CD47-201ENST00000355354 TTC21BQ7Z4L5 1316 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms