RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 COL15A1P39059 1388 aa21.65■■□□□ 1.06
LSM1-201ENST00000311351 NEFMP07197 916 aa21.65■■□□□ 1.06
LSM1-201ENST00000311351 NLGN1Q8N2Q7 840 aa21.65■■□□□ 1.06
LSM1-201ENST00000311351 KDM3BQ7LBC6 1761 aa21.64■■□□□ 1.05
LSM1-201ENST00000311351 MAPK8IP3Q9UPT6 1336 aa21.63■■□□□ 1.05
LSM1-201ENST00000311351 FMNL2Q96PY5 1086 aa21.63■■□□□ 1.05
LSM1-201ENST00000311351 N4BP2Q86UW6 1770 aaPredicted RBP21.63■■□□□ 1.05
LSM1-201ENST00000311351 C10orf71Q711Q0 1435 aa21.63■■□□□ 1.05
LSM1-201ENST00000311351 HTATSF1O43719 755 aaKnown RBP21.62■■□□□ 1.05
LSM1-201ENST00000311351 YBX3P16989 372 aaKnown RBP eCLIP21.62■■□□□ 1.05
LSM1-201ENST00000311351 CANXP27824 592 aaKnown RBP21.62■■□□□ 1.05
LSM1-201ENST00000311351 FKBP8Q14318 412 aa21.62■■□□□ 1.05
LSM1-201ENST00000311351 NFE2L2Q16236 605 aa21.62■■□□□ 1.05
LSM1-201ENST00000311351 SCN7AQ01118 1682 aa21.62■■□□□ 1.05
LSM1-201ENST00000311351 STARD3NLO95772 234 aa21.61■■□□□ 1.05
LSM1-201ENST00000311351 USPL1Q5W0Q7 1092 aa21.61■■□□□ 1.05
LSM1-201ENST00000311351 PRKRIP1Q9H875 184 aaPredicted RBP21.61■■□□□ 1.05
LSM1-201ENST00000311351 WWC3Q9ULE0 1092 aa21.61■■□□□ 1.05
LSM1-201ENST00000311351 PXDNLA1KZ92 1463 aa21.6■■□□□ 1.05
LSM1-201ENST00000311351 THUMPD2Q9BTF0 503 aaKnown RBP21.6■■□□□ 1.05
LSM1-201ENST00000311351 LAMB4A4D0S4 1761 aa21.59■■□□□ 1.05
LSM1-201ENST00000311351 PRAMEF22A3QJZ6 481 aa21.59■■□□□ 1.05
LSM1-201ENST00000311351 DDR1Q08345 913 aa21.59■■□□□ 1.05
LSM1-201ENST00000311351 PARP3Q9Y6F1 533 aa21.59■■□□□ 1.05
LSM1-201ENST00000311351 AFDNP55196 1824 aaKnown RBP21.58■■□□□ 1.05
LSM1-201ENST00000311351 ZPR1O75312 459 aa21.58■■□□□ 1.05
LSM1-201ENST00000311351 PNNQ9H307 717 aaKnown RBP21.58■■□□□ 1.05
LSM1-201ENST00000311351 MIS18AQ9NYP9 233 aa21.58■■□□□ 1.05
LSM1-201ENST00000311351 EIF5P55010 431 aaKnown RBP21.57■■□□□ 1.04
LSM1-201ENST00000311351 TEX13AQ9BXU3 409 aaPredicted RBP21.57■■□□□ 1.04
LSM1-201ENST00000311351 NARFQ9UHQ1 456 aa21.57■■□□□ 1.04
LSM1-201ENST00000311351 ZNF330Q9Y3S2 320 aaPredicted RBP21.57■■□□□ 1.04
LSM1-201ENST00000311351 BCORQ6W2J9 1755 aa21.56■■□□□ 1.04
LSM1-201ENST00000311351 A1BGP04217 495 aa21.56■■□□□ 1.04
LSM1-201ENST00000311351 TAF7Q15545 349 aaPredicted RBP21.56■■□□□ 1.04
LSM1-201ENST00000311351 CCDC146Q8IYE0 955 aa21.56■■□□□ 1.04
LSM1-201ENST00000311351 BCL2L12Q9HB09 334 aa21.56■■□□□ 1.04
LSM1-201ENST00000311351 BRCA1P38398 1863 aaKnown RBP21.56■■□□□ 1.04
LSM1-201ENST00000311351 PIP4K2AP48426 406 aaPredicted RBP21.55■■□□□ 1.04
LSM1-201ENST00000311351 USP16Q9Y5T5 823 aa21.55■■□□□ 1.04
LSM1-201ENST00000311351 POLRMTO00411 1230 aaKnown RBP21.54■■□□□ 1.04
LSM1-201ENST00000311351 NRXN2Q9P2S2 1712 aa21.54■■□□□ 1.04
LSM1-201ENST00000311351 WDR43Q15061 677 aaKnown RBP eCLIP21.53■■□□□ 1.04
LSM1-201ENST00000311351 SNRPA1P09661 255 aaKnown RBP21.52■■□□□ 1.04
LSM1-201ENST00000311351 TM4SF1P30408 202 aa21.52■■□□□ 1.04
LSM1-201ENST00000311351 IL6STP40189 918 aaPredicted RBP21.52■■□□□ 1.04
LSM1-201ENST00000311351 NFIXQ14938 502 aa21.52■■□□□ 1.04
LSM1-201ENST00000311351 RRP7AQ9Y3A4 280 aaKnown RBP21.52■■□□□ 1.04
LSM1-201ENST00000311351 GRIN3BO60391 1043 aa21.51■■□□□ 1.03
LSM1-201ENST00000311351 TMPOP42166 694 aaKnown RBP21.51■■□□□ 1.03
LSM1-201ENST00000311351 RIPK4P57078 832 aa21.51■■□□□ 1.03
LSM1-201ENST00000311351 TBC1D2BQ9UPU7 963 aa21.51■■□□□ 1.03
LSM1-201ENST00000311351 A0A087WZG4 1122 aa21.5■■□□□ 1.03
LSM1-201ENST00000311351 A0A0G2JLW4 131 aa21.5■■□□□ 1.03
LSM1-201ENST00000311351 ADAMTS8Q9UP79 889 aa21.5■■□□□ 1.03
LSM1-201ENST00000311351 DPEP1P16444 411 aa21.49■■□□□ 1.03
LSM1-201ENST00000311351 TGFB2P61812 414 aa21.49■■□□□ 1.03
LSM1-201ENST00000311351 PNISRQ8TF01 805 aaKnown RBP21.49■■□□□ 1.03
LSM1-201ENST00000311351 ZNF316A6NFI3 1004 aaPredicted RBP21.48■■□□□ 1.03
LSM1-201ENST00000311351 NEUROD2Q15784 382 aa21.48■■□□□ 1.03
LSM1-201ENST00000311351 BICDL1Q6ZP65 573 aa21.48■■□□□ 1.03
LSM1-201ENST00000311351 EIF4A1P60842 406 aaKnown RBP21.47■■□□□ 1.03
LSM1-201ENST00000311351 RUNDC1Q96C34 613 aa21.47■■□□□ 1.03
LSM1-201ENST00000311351 CARMIL3Q8ND23 1372 aa21.47■■□□□ 1.03
LSM1-201ENST00000311351 NBPF26B4DH59 902 aa21.46■■□□□ 1.03
LSM1-201ENST00000311351 CAMTA2O94983 1202 aa21.46■■□□□ 1.03
LSM1-201ENST00000311351 TBC1D9BQ66K14 1250 aa21.46■■□□□ 1.03
LSM1-201ENST00000311351 NBPF10Q6P3W6 841 aaKnown RBP21.46■■□□□ 1.03
LSM1-201ENST00000311351 DZIP3Q86Y13 1208 aaKnown RBP21.46■■□□□ 1.03
LSM1-201ENST00000311351 NBPF15Q8N660 670 aa21.46■■□□□ 1.03
LSM1-201ENST00000311351 ZNF784Q8NCA9 323 aaPredicted RBP21.46■■□□□ 1.03
LSM1-201ENST00000311351 DLEC1Q9Y238 1755 aa21.46■■□□□ 1.03
LSM1-201ENST00000311351 ARFGEF1Q9Y6D6 1849 aa21.45■■□□□ 1.03
LSM1-201ENST00000311351 ANKRD31Q8N7Z5 1873 aa21.45■■□□□ 1.02
LSM1-201ENST00000311351 SERPINB2P05120 415 aa21.45■■□□□ 1.02
LSM1-201ENST00000311351 LMOD3Q0VAK6 560 aa21.45■■□□□ 1.02
LSM1-201ENST00000311351 NPM2Q86SE8 214 aaKnown RBP21.45■■□□□ 1.02
LSM1-201ENST00000311351 BCS1LQ9Y276 419 aa21.45■■□□□ 1.02
LSM1-201ENST00000311351 GIGYF1O75420 1035 aaPredicted RBP21.44■■□□□ 1.02
LSM1-201ENST00000311351 CHRNA5P30532 468 aa21.44■■□□□ 1.02
LSM1-201ENST00000311351 TSPYL4Q9UJ04 414 aa21.44■■□□□ 1.02
LSM1-201ENST00000311351 KCNA3P22001 575 aa21.43■■□□□ 1.02
LSM1-201ENST00000311351 CCDC184Q52MB2 194 aa21.43■■□□□ 1.02
LSM1-201ENST00000311351 COL11A2P13942 1736 aaPredicted RBP21.42■■□□□ 1.02
LSM1-201ENST00000311351 TRIM35Q9UPQ4 493 aa21.42■■□□□ 1.02
LSM1-201ENST00000311351 CCDC24Q8N4L8 307 aa21.39■■□□□ 1.01
LSM1-201ENST00000311351 PIM2Q9P1W9 311 aa21.38■■□□□ 1.01
LSM1-201ENST00000311351 NUP98P52948 1817 aa21.38■■□□□ 1.01
LSM1-201ENST00000311351 ADCY9O60503 1353 aa21.37■■□□□ 1.01
LSM1-201ENST00000311351 PRR5LQ6MZQ0 368 aa21.37■■□□□ 1.01
LSM1-201ENST00000311351 NGEFQ8N5V2 710 aa21.37■■□□□ 1.01
LSM1-201ENST00000311351 ATP10DQ9P241 1426 aa21.37■■□□□ 1.01
LSM1-201ENST00000311351 APAF1O14727 1248 aa21.36■■□□□ 1.01
LSM1-201ENST00000311351 MYL6BP14649 208 aa21.36■■□□□ 1.01
LSM1-201ENST00000311351 DALRD3Q5D0E6 543 aaKnown RBP21.36■■□□□ 1.01
LSM1-201ENST00000311351 SETDB2Q96T68 719 aa21.36■■□□□ 1.01
LSM1-201ENST00000311351 BABAM1Q9NWV8 329 aa21.36■■□□□ 1.01
LSM1-201ENST00000311351 LAS1LQ9Y4W2 734 aaKnown RBP21.36■■□□□ 1.01
LSM1-201ENST00000311351 CACNA1SQ13698 1873 aa21.35■■□□□ 1.01
LSM1-201ENST00000311351 KRT24Q2M2I5 525 aa21.35■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms